2024-03-29 15:15:03, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001350108 3594 bp mRNA linear PLN 03-SEP-2021 DEFINITION Zea mays uncharacterized LOC100193970 (LOC100193970), mRNA. ACCESSION NM_001350108 XM_020541893 VERSION NM_001350108.1 KEYWORDS RefSeq. SOURCE Zea mays ORGANISM Zea mays Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea. REFERENCE 1 (bases 1 to 3594) AUTHORS Soderlund C, Descour A, Kudrna D, Bomhoff M, Boyd L, Currie J, Angelova A, Collura K, Wissotski M, Ashley E, Morrow D, Fernandes J, Walbot V and Yu Y. TITLE Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs JOURNAL PLoS Genet 5 (11), e1000740 (2009) PUBMED 19936069 REFERENCE 2 (bases 1 to 3594) AUTHORS Vega-Arreguin JC, Ibarra-Laclette E, Jimenez-Moraila B, Martinez O, Vielle-Calzada JP, Herrera-Estrella L and Herrera-Estrella A. TITLE Deep sampling of the Palomero maize transcriptome by a high throughput strategy of pyrosequencing JOURNAL BMC Genomics 10, 299 (2009) PUBMED 19580677 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3594) AUTHORS Gardiner J, Schroeder S, Polacco ML, Sanchez-Villeda H, Fang Z, Morgante M, Landewe T, Fengler K, Useche F, Hanafey M, Tingey S, Chou H, Wing R, Soderlund C and Coe EH Jr. TITLE Anchoring 9,371 maize expressed sequence tagged unigenes to the bacterial artificial chromosome contig map by two-dimensional overgo hybridization JOURNAL Plant Physiol 134 (4), 1317-1326 (2004) PUBMED 15020742 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from CABHLF010000006.1 and BT036371.1. On Apr 7, 2017 this sequence version replaced XM_020541893.1. ##Evidence-Data-START## Transcript exon combination :: SRR12162136.1721725.1, SRR3147036.362.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00780084, SAMN00780085 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-116 CABHLF010000006.1 138437184-138437299 117-944 CABHLF010000006.1 138438924-138439751 945-1156 CABHLF010000006.1 138439831-138440042 1157-1306 CABHLF010000006.1 138440115-138440264 1307-1440 CABHLF010000006.1 138440349-138440482 1441-1550 CABHLF010000006.1 138440669-138440778 1551-1657 CABHLF010000006.1 138440862-138440968 1658-1796 CABHLF010000006.1 138441061-138441199 1797-1913 CABHLF010000006.1 138441336-138441452 1914-2021 CABHLF010000006.1 138441707-138441814 2022-2093 CABHLF010000006.1 138441914-138441985 2094-2216 CABHLF010000006.1 138442375-138442497 2217-2270 CABHLF010000006.1 138442585-138442638 2271-3594 BT036371.1 1-1324 FEATURES Location/Qualifiers source 1..3594 /organism="Zea mays" /mol_type="mRNA" /cultivar="B73" /db_xref="taxon:4577" /chromosome="8" /map="8" gene 1..3594 /gene="LOC100193970" /gene_synonym="argonaute1; GRMZM2G162525" /note="uncharacterized LOC100193970" /db_xref="GeneID:100193970" exon 1..116 /gene="LOC100193970" /gene_synonym="argonaute1; GRMZM2G162525" /inference="alignment:Splign:2.1.0" misc_feature 75..77 /gene="LOC100193970" /gene_synonym="argonaute1; GRMZM2G162525" /note="upstream in-frame stop codon" exon 117..944 /gene="LOC100193970" /gene_synonym="argonaute1; GRMZM2G162525" /inference="alignment:Splign:2.1.0" CDS 129..3455 /gene="LOC100193970" /gene_synonym="argonaute1; GRMZM2G162525" /codon_start=1 /product="Protein argonaute 1B" /protein_id="NP_001337037.1" /db_xref="GeneID:100193970" /translation="
MVRKKRTGPGESSGESSGAPGHGSSQRPQATQQGTRGGGQHQGRGGYLGPGVPPSQHPGGGPPEYHQPLDYQGRGGYQGRGGPPSQHPGGGTPPGSQPRGYQGHGGYQGRGGPPSQYPGGGTPPGSQPRDYHGRGGPRPRGGMPQSYRGGHVGGSVVPSVPSGPSRPVPELHQAPDVQHQAPVVATPSSPGAGSSSQPGKAEVSAGQVQQQFQQLAIRNQSLASQAGQMAPASSKSVRFPLRPGKGTHGSRCIVKANHFFAELPNKDLHQYDVSITPEVTSRGVNRAVMAELVKLYRHSHLDGRLPAYDGRKSLYTAGALPFASKTFEITLQDEEDSLGGGQRRQRVFRVTIKFAARADLHHLAMFLAGRQPDAPQEALQVLDIVLREMPTAKYCPVGRSFYSPKLGRPQQLGEGLETWRGFYQSIRPTQMGLSLNIDMSSTAFFEALPVIDFVSQLLNRDISVRPLSDSDRVKIKKALRGVKVEVTHRGNMRRKYRISGLTPQATRELSFPIDDRGTVKTVVQYFLETYGFSIQHTTLPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNDKQITALLKVTCQRPQAREKDILETVYHNAYSKDPYAQEFGITIDERLASVEARVLPPPRLKYHDSGRERDVLPKIGQWNMMNKKMVNGGRVSSWACINFSRNVQDGAAGSFCHELALMCQVSGMDFVLEPVLSPCYARPELVERALKGRYQDAMNILGPQGRELDLLIVILPDNNGSLYGDVKRICETNLGLVSQCCLTKHVFKVNKQQYLANVALKINVKVGGRNTVLVDALARRIPLVSDIATIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVSAQAHRQELIQDLFKVWQDPERGTVSGGMIRELLISFWRATGQKPKRIIFYRDGVSEGQFYQVLLYELDAIRKACASLESDYQPPVTFVVVQKRHHTRLFANNHNDNRAVDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGLQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPDTSDSGSMASRGPPPGGRNTKAAGVGNVAVRPLPALKENVKRVMFYC"
misc_feature 483..824 /gene="LOC100193970" /gene_synonym="argonaute1; GRMZM2G162525" /note="Glycine-rich region of argonaut; Region: Gly-rich_Ago1; pfam12764" /db_xref="CDD:432767" misc_feature 816..3452 /gene="LOC100193970" /gene_synonym="argonaute1; GRMZM2G162525" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" exon 945..1156 /gene="LOC100193970" /gene_synonym="argonaute1; GRMZM2G162525" /inference="alignment:Splign:2.1.0" exon 1157..1306 /gene="LOC100193970" /gene_synonym="argonaute1; GRMZM2G162525" /inference="alignment:Splign:2.1.0" exon 1307..1440 /gene="LOC100193970" /gene_synonym="argonaute1; GRMZM2G162525" /inference="alignment:Splign:2.1.0" exon 1441..1550 /gene="LOC100193970" /gene_synonym="argonaute1; GRMZM2G162525" /inference="alignment:Splign:2.1.0" exon 1551..1657 /gene="LOC100193970" /gene_synonym="argonaute1; GRMZM2G162525" /inference="alignment:Splign:2.1.0" exon 1658..1796 /gene="LOC100193970" /gene_synonym="argonaute1; GRMZM2G162525" /inference="alignment:Splign:2.1.0" exon 1797..1913 /gene="LOC100193970" /gene_synonym="argonaute1; GRMZM2G162525" /inference="alignment:Splign:2.1.0" exon 1914..2021 /gene="LOC100193970" /gene_synonym="argonaute1; GRMZM2G162525" /inference="alignment:Splign:2.1.0" exon 2022..2093 /gene="LOC100193970" /gene_synonym="argonaute1; GRMZM2G162525" /inference="alignment:Splign:2.1.0" exon 2094..2216 /gene="LOC100193970" /gene_synonym="argonaute1; GRMZM2G162525" /inference="alignment:Splign:2.1.0" exon 2217..2382 /gene="LOC100193970" /gene_synonym="argonaute1; GRMZM2G162525" /inference="alignment:Splign:2.1.0" exon 2383..2507 /gene="LOC100193970" /gene_synonym="argonaute1; GRMZM2G162525" /inference="alignment:Splign:2.1.0" exon 2508..2645 /gene="LOC100193970" /gene_synonym="argonaute1; GRMZM2G162525" /inference="alignment:Splign:2.1.0" exon 2646..2788 /gene="LOC100193970" /gene_synonym="argonaute1; GRMZM2G162525" /inference="alignment:Splign:2.1.0" exon 2789..2851 /gene="LOC100193970" /gene_synonym="argonaute1; GRMZM2G162525" /inference="alignment:Splign:2.1.0" exon 2852..2915 /gene="LOC100193970" /gene_synonym="argonaute1; GRMZM2G162525" /inference="alignment:Splign:2.1.0" exon 2916..3051 /gene="LOC100193970" /gene_synonym="argonaute1; GRMZM2G162525" /inference="alignment:Splign:2.1.0" exon 3052..3125 /gene="LOC100193970" /gene_synonym="argonaute1; GRMZM2G162525" /inference="alignment:Splign:2.1.0" exon 3126..3220 /gene="LOC100193970" /gene_synonym="argonaute1; GRMZM2G162525" /inference="alignment:Splign:2.1.0" exon 3221..3252 /gene="LOC100193970" /gene_synonym="argonaute1; GRMZM2G162525" /inference="alignment:Splign:2.1.0" exon 3253..3594 /gene="LOC100193970" /gene_synonym="argonaute1; GRMZM2G162525" /inference="alignment:Splign:2.1.0" ORIGIN
atacaagagtgagagcagggagcacgagcgctctgagtgagtggaagacgagaggagttggagttccccagggctagggtttcattcgccacccgcgccgcccttcccttccccagcatccgtccgccatggtgaggaagaaaagaactggccctggagagagttctggggagtcttctggagcgcctggtcatggctcctcacagcgtcctcaggcaacacaacagggtacccgtggtggagggcaacaccagggccgtggtggatatctgggccctggagtgccgccttcacagcacccaggtggtggcccacctgagtatcatcaaccgcttgactaccagggacgtggtggatatcagggccgtggtggaccaccttcacagcatcctggtggtgggacaccccctgggtctcaaccgcgtggctaccaggggcacggtggataccagggccgtggcgggccaccttcacagtatcctggtggtgggacaccccctgggtctcaaccacgtgactaccacggacgtggtggtccgcgtcccagagggggaatgccacagtcataccgtggcgggcatgtgggaggtagtgttgtaccaagtgttccttcaggtccatctaggccagttcccgagctgcaccaagccccagatgtccaacatcaagcccctgtggtggcaacaccatcttcgccaggagctggctcgtcctcgcagcctgggaaggctgaggtgagcgctggacaagtccagcaacagttccagcagcttgcgattcgtaaccaaagcttagccagccaagctggtcagatggcaccagcgtcaagcaaatctgttaggttcccattgcgccctggcaagggtacgcatgggtccaggtgcattgtgaaggcaaatcatttctttgctgagctgcctaataaagaccttcaccaatacgatgtatcaataacacctgaggttacttcacgcggcgtcaatcgtgctgtcatggcagagctagtaaaactttacagacactcccatttggatgggcgtctgcctgcatatgatggaaggaagagtctttatacagctggagcgttgccatttgcttcgaagacattcgaaattactctgcaagatgaggaagacagtcttggtggaggccaaaggcgccagagggtatttcgggtgaccatcaaatttgctgctcgcgctgatctccaccatctggctatgtttcttgctgggaggcagccagatgcccctcaagaggctcttcaagtacttgacatcgtgctacgtgaaatgcctactgccaagtattgtcctgttggtagatcattttattctcccaagttagggagacctcagcaacttggtgaaggtttggaaacttggcgtggtttctaccaaagcataaggcccacacagatgggtctttctctgaatattgatatgtcctctactgcattttttgaggccctccctgtaattgattttgtttctcagcttcttaatagagatatctcagttagaccattgtctgattctgatcgcgtgaagattaaaaaagccctacgaggtgtgaaagtggaggtcacacaccgtggaaacatgcgtaggaaatatcggatatctggccttactccacaagcaacaagggagttatcattccctattgatgatcgtggtactgttaagactgtggtgcaatacttcctggagacttatggtttcagtattcagcacaccactttaccttgtttgcaagtgggcaatcagcaaagaccaaattatctgcctatggaggtctgtaagatagttgaggggcagcgctactcaaaacgacttaatgataaacagatcactgctctactgaaggtgacttgccaacgtccccaagcacgtgagaaggacatcttggagactgtgtatcacaatgcctactccaaggatccttatgcccaggaatttggtataacgattgatgagcgtcttgcatcggttgaagctcgtgttctgcctcccccaaggctgaaataccatgatagtggcagagaaagggatgtattgccaaaaattggccagtggaacatgatgaataagaaaatggtcaatggtggtagagttagcagctgggcatgcattaacttctcacggaatgtgcaagatggtgctgccgggagtttctgtcatgaattggctttgatgtgccaagtatcaggaatggattttgtacttgaacctgtgctgtcaccttgctatgcaaggcctgaacttgttgaaagagcactaaagggacgctatcaagatgcgatgaacatactcgggcctcagggccgagaactcgacttgctgattgttatactgcctgacaataatggttctctttacggggatgtcaaaaggatctgtgagactaatcttggattggtctcccaatgctgtctgactaaacatgttttcaaggtgaacaagcagcagtatcttgcaaatgttgccctgaaaataaatgtgaaggttgggggaaggaatactgtgcttgttgatgctttggcaaggagaatcccccttgtcagtgacatagcgactattatctttggtgctgatgtgacccatccccatcctggggaagattctagtccttccattgcagctgtggttgcttctcaagactggcctgaggttacaaagtatgcaggattggtgagtgctcaagcccatcgtcaagaattgatacaggatcttttcaaggtatggcaagatcccgaaagggggactgtctctggtggcatgatcagggagcttctcatatctttctggagggcaactggacagaaaccaaagaggatcatattctacagggatggcgtcagtgagggacaattctaccaagttctgttgtatgaacttgatgccattagaaaggcctgtgcgtcattggagtctgactaccagcctccagttacttttgtcgtggtccagaagcgtcatcacaccaggttgtttgctaataatcacaatgataatcgtgctgtcgataaaagcgggaacatactgcctggcaccgtggtggactcgaagatctgccatccaactgagtttgatttctacctgtgcagccatgctggcattcagggaacaagccgccctgcccattaccatgttctgtgggatgagaacaactttacggctgatgggttgcaaactctcaccaacaacttgtgttacacgtatgctaggtgcacacgctcagtatcgattgttcctcctgcatactatgctcacctggcagccttccgagctcggttctacatggagccagatacgagtgacagtggatctatggcaagccgtggccctccaccaggggggcgcaacaccaaggctgctggtgttgggaatgttgctgtgaggccattacctgccctcaaggaaaacgtgaagcgggtcatgttctactgctaagactgatgctgttaaggcagagctaccttttattattacagtatatcgtgaagactagagtattttttccatgtacttgatgatgctgagctaccttttattatgtcgtacgatatatatgcgtggtactggttacagt
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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