LOCUS       NM_001319770            1400 bp    mRNA    linear   PLN 09-JAN-2022
DEFINITION  Zea mays knotted related homeobox 8 (LOC606458), transcript variant
            2, mRNA.
ACCESSION   NM_001319770 XM_008667276
VERSION     NM_001319770.1
KEYWORDS    RefSeq.
SOURCE      Zea mays
  ORGANISM  Zea mays
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD
            clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae;
            Zea.
REFERENCE   1  (bases 1 to 1400)
  AUTHORS   Yilmaz A, Nishiyama MY Jr, Fuentes BG, Souza GM, Janies D, Gray J
            and Grotewold E.
  TITLE     GRASSIUS: a platform for comparative regulatory genomics across the
            grasses
  JOURNAL   Plant Physiol 149 (1), 171-180 (2009)
   PUBMED   18987217
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BT036681.1.
            
            On Feb 4, 2016 this sequence version replaced XM_008667276.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BT036681.1, SRR3147022.9253.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00780151, SAMN00780152
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1400
                     /organism="Zea mays"
                     /mol_type="mRNA"
                     /db_xref="taxon:4577"
                     /chromosome="1"
                     /map="1"
     gene            1..1400
                     /gene="LOC606458"
                     /gene_synonym="GRMZM2G135447; knox8; knox8a"
                     /note="knotted related homeobox 8"
                     /db_xref="GeneID:606458"
     exon            1..560
                     /gene="LOC606458"
                     /gene_synonym="GRMZM2G135447; knox8; knox8a"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    150..152
                     /gene="LOC606458"
                     /gene_synonym="GRMZM2G135447; knox8; knox8a"
                     /note="upstream in-frame stop codon"
     CDS             189..1283
                     /gene="LOC606458"
                     /gene_synonym="GRMZM2G135447; knox8; knox8a"
                     /note="isoform 2 is encoded by transcript variant 2;
                     knotted 1-type homeobox protein 8; cR18; pge(F8);
                     pge16c(knox8); putative knotted-like transcription factor
                     family protein; HB-type transcription factor; homeobox
                     protein rough sheath 1; homeobox protein knotted-1-like
                     12"
                     /codon_start=1
                     /product="knotted related homeobox 8 isoform 2"
                     /protein_id="NP_001306699.1"
                     /db_xref="GeneID:606458"
                     /translation="

MDSFGDLGGGGSSSSRAASAPFLQLPLPASTSSAQQQVLFPLPDGPQQQHHHHSSRIPLRQLLLLADPSSAAQHSASHRTKDMATVQGEMSSPAVDGDADAIKARIMSHPQYSALLAAYLDCQKVGAPPDVSDRLSAMAAANLDAQPGPISRRRGPTTTRADDPELDQFMEAYCNMLVKFHEEMARPIQEATEFFNSMERQLGSTISDSNCEVAGSSEDEQDASWPEEIDPCAEDKELKHQLLRKYGGYLGGLRQEFSKRKKKGKLPKEARQKLLHWWELHYKWPYPSETEKMALAETTGLDPKQINNWFINQRKRHWKPASEDMPFAVMEGGFHVAQGTAALYMDRPAVPPFMADGGMYRLGS"

     misc_feature    489..608
                     /gene="LOC606458"
                     /gene_synonym="GRMZM2G135447; knox8; knox8a"
                     /note="KNOX1 domain; Region: KNOX1; pfam03790"
                     /db_xref="CDD:427505"
     misc_feature    672..800
                     /gene="LOC606458"
                     /gene_synonym="GRMZM2G135447; knox8; knox8a"
                     /note="KNOX2 domain; Region: KNOX2; pfam03791"
                     /db_xref="CDD:427506"
     misc_feature    897..962
                     /gene="LOC606458"
                     /gene_synonym="GRMZM2G135447; knox8; knox8a"
                     /note="ELK domain; Region: ELK; pfam03789"
                     /db_xref="CDD:427504"
     misc_feature    1020..1136
                     /gene="LOC606458"
                     /gene_synonym="GRMZM2G135447; knox8; knox8a"
                     /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920"
                     /db_xref="CDD:428673"
     exon            561..698
                     /gene="LOC606458"
                     /gene_synonym="GRMZM2G135447; knox8; knox8a"
                     /inference="alignment:Splign:2.1.0"
     exon            699..810
                     /gene="LOC606458"
                     /gene_synonym="GRMZM2G135447; knox8; knox8a"
                     /inference="alignment:Splign:2.1.0"
     exon            811..1052
                     /gene="LOC606458"
                     /gene_synonym="GRMZM2G135447; knox8; knox8a"
                     /inference="alignment:Splign:2.1.0"
     exon            1053..1400
                     /gene="LOC606458"
                     /gene_synonym="GRMZM2G135447; knox8; knox8a"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

caaatatctatctcaaccatctacatggctttatctcctccttattgttccagtcgtccgatccatttgctatcttagccttagctagctagggtttcttgagtcgccttggcctcagcagcttcctacttcgtctgtcttctgattattaacacagtagaaataaagaagctagctatagcgacgccatggatagcttcggggatcttggcggaggtgggagcagttcctccagagctgcttctgctcccttcttgcagctcccgctgccggcatcaacgtcatcagcacaacaacaggtgttatttccgctgccggacgggccgcagcagcagcaccatcaccacagctcgcgcatcccgttgcgacagttactgttactggccgacccgtcgtcggcagcgcagcatagcgctagccatcggacgaaggacatggcaacagtgcagggagagatgtcgtcgccggcggtggatggggatgccgacgccatcaaggccaggatcatgtcgcacccccagtactcggccctcctcgccgcctacttagactgccaaaaggtcggcgcgccgccggatgtgtcggataggctctcggccatggcggcggcgaatctggacgcgcagccggggccaataagccggcggcgcggcccgacgacgacgcgagctgatgacccggagctcgaccagttcatggaggcttactgcaacatgctggtgaagttccacgaggagatggcgcggccgatccaggaggcaacggagttcttcaacagcatggagaggcagctcggctcgacgatctccgacagtaactgtgaggtcgccgggtcgtccgaggatgagcaggacgcgagctggcctgaggagatcgatccctgcgccgaggacaaggagctcaagcaccagcttctgaggaagtacggcggctacctgggcggccttcgccaggagttctccaagaggaagaagaaagggaagctccccaaggaggcgaggcagaagttgctgcactggtgggagctgcactacaagtggccctacccttctgagacggagaagatggcgctcgcagagacgaccgggctggacccgaagcagatcaacaactggttcatcaaccagcggaagcggcactggaagccggcgtcggaggacatgccgttcgcggtgatggagggcgggttccacgtcgcgcagggcaccgcagcgctgtatatggacaggccggcggtgccgccgttcatggcggacggcgggatgtaccggctggggtcgtgagggccggcatgcacggtaaaagctaagcacgtgtgccagcacgacggtgattgttgaggtgtagtagtgattgaactgattgctccttctcatccgtaaatatacagtttcgggttg

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