2024-03-29 15:20:42, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001287791 3376 bp mRNA linear PLN 18-OCT-2018 DEFINITION Solanum lycopersicum Argonaute 3 (AGO3), mRNA. ACCESSION NM_001287791 XM_004233160 VERSION NM_001287791.1 KEYWORDS RefSeq. SOURCE Solanum lycopersicum (Lycopersicon esculentum) ORGANISM Solanum lycopersicum Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon. REFERENCE 1 (bases 1 to 3376) AUTHORS Xian Z, Yang Y, Huang W, Tang N, Wang X and Li Z. TITLE Molecular cloning and characterisation of SlAGO family in tomato JOURNAL BMC Plant Biol. 13, 126 (2013) PUBMED 24011258 REMARK Publication Status: Online-Only COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from JX467708.1. On Dec 19, 2013 this sequence version replaced XM_004233160.1. ##Evidence-Data-START## Transcript exon combination :: JX467708.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN04384497, SAMN06134382 [ECO:0000348] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..3376 /organism="Solanum lycopersicum" /mol_type="mRNA" /db_xref="taxon:4081" /chromosome="2" /map="2" gene 1..3376 /gene="AGO3" /note="Argonaute 3" /db_xref="GeneID:101247981" CDS 84..3083 /gene="AGO3" /note="argonaute RISC catalytic component 3" /codon_start=1 /product="Argonaute 3" /protein_id="NP_001274720.1" /db_xref="GeneID:101247981" /translation="
MDRGNNNGRGGDRKRGRNSDRVPGHNEQRQGPARGYYDPSQYRARAYYEEEQGRARGQHEEEQGRARVQHEQEQGRGRGRGGRDAFQMGSSSSNQPRPSDQHQFTETVAPENQLVSQTPVATGMNWLNAARKGAGTASPPPQQQQKDAPVLLGKITLKDSKKREPMGRPDGGNTSDESVSLHANHFPVDFNDGTIILHYDVDVQKVDGDQPGKSVTDRFDLRKIREKWLMDKPAEFPCDKTAYDGIRNIYSAVDLPAKPLTVNCSVEDDAKEYKYILTFKLVAQLQLDNVTEYLRRSLQNIIPRDVLQGMDLVMKENPRRCRISVGRCFYSNSARTSFNGGVAARKGFQQSLKLTSEGLALCLDYSELLVIPEQIPVIEFLENYYGKNIDDIFKYTRAGASDLLVGLKVKVTHRPNKQKFVIKELLPGETRTVKFKLQDTGEEVLLVDYFDKNYTPKIKNRHLPSLNIGKGDKDNYVPMEFCDLVEGQRFPKDLLKTTSLEPKTRRDLIRETVLAKDGPRMTIPDNFKIRVDDNMTQISGRILPVPVLKLGGQNPPPNLNYKTCQWNLVGKSVVEGKALQRWALIDFSSKGCRDSLKLQVDEFVVKLKDRCTQLSINMDIPAVVHLTDMNELSTVGKVENLLKVVTDAAEKKLQGKLQMILCVMTSKHNGYKYLKWVSETKIGIVTQCCLSSNANKGHNQYIVNLCMKINAKLGGSNMELMERLPNFRSDDNVMFIGADVNHPAGKDADKYPSIAAVVATINWPAANKYAARVSPQKSRTEKIIEFGKMCKDLVLTYEKRNSVKPNKIVVFRDGVSDSQFDMVLNEELTDLANAIYESNKYQPAITLVVAQKRHHTRLFPKEGNVSPGTVVDTQIVHPSGFDFYLCSHYGQLGTSKATHYHVLYDDNGFISVDLQRLIYNMCFTFARCTKPVSLVPPVYYADLVAYRGRMFQEVLMEMKSPRSTTSSSEASSSSSSPIDSFAQEFYDLHHDLKDIMFFV"
misc_feature 1053..1181 /gene="AGO3" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 1206..1538 /gene="AGO3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1341..1343,1386..1388,1419..1421,1431..1433, 1485..1487,1506..1508,1512..1514) /gene="AGO3" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1647..2936 /gene="AGO3" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(2094..2096,2106..2108,2142..2153,2160..2162, 2184..2186,2193..2195,2205..2207,2217..2219) /gene="AGO3" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2298..2300,2304..2306,2520..2522,2907..2909) /gene="AGO3" /note="active site" /db_xref="CDD:240015" ORIGIN
acttcatcattctcaacgcaaaaactttacaagaatttacagttgctagttttctttctctcttacttaaaaaatactcgcaaatggaccgtggaaacaacaacggacgtggtggagaccgtaaacgtggtcgtaattctgatcgtgttcctggtcacaatgaacagagacaaggccctgctcgtggttactacgacccgagccaataccgtgctcgtgcttactacgaagaggaacaaggccgtgctcgtggtcagcacgaagaggaacaaggccgtgctcgtgttcagcacgaacaggaacaaggccgtggacgtggtcgtggtggaagggatgcgtttcagatgggttcatcttcatctaaccagcccaggccatcggatcagcatcagtttactgagactgtggctccggaaaatcagctggttagtcagactccggtagctactggtatgaattggctcaatgctgccagaaaaggtgctggtactgcttcaccaccgccacaacaacaacaaaaggatgctccagttcttctggggaaaataactctgaaggattcaaaaaaacgtgaacctatgggacgacctgatggtggaaacacttctgacgagtctgttagcctgcatgctaatcactttcctgttgattttaatgacggaactatcattttgcattatgatgtggatgtacaaaaggttgatggggatcagcctgggaagtcagtaacagacaggtttgatctccgtaagataagagaaaagtggttgatggataagcctgctgaatttccttgtgataaaactgcatatgacggtattagaaacatttacagtgctgttgatcttcctgctaagcctttaactgtgaactgctctgttgaggatgatgctaaggaatacaagtacatacttaccttcaagcttgttgctcaattacaacttgacaacgtgactgaatatttgagacgaagcctccagaatattattcctcgtgatgtactgcaaggaatggatttggttatgaaagaaaatcctaggaggtgcaggatttctgtaggtcgttgtttctactctaacagtgctcgcacatcttttaatggcggggttgctgcacgtaaaggttttcagcagagcctaaagctaacatctgaaggtcttgcgttgtgcttagattactcagaactcttggtaatcccggaacaaattccagtgatagaatttcttgagaattattatgggaaaaatatagacgacattttcaagtatacaagagcaggtgcaagtgatttattggttggtctgaaagtcaaagtaactcatcgtcctaacaagcagaagtttgtcatcaaggagctacttccaggagaaactcgtactgttaaatttaaacttcaagatacgggagaggaggttttgcttgttgactacttcgataaaaattatacccctaaaattaagaacaggcatttaccttcactaaatattggaaaaggtgataaggacaactatgtcccgatggaattctgtgacttggttgagggacaacgatttcctaaggatcttttgaaaacaacctcccttgaacccaaaacgagaagggatttaatacgtgagacggtactggctaaagatgggccgcgcatgactattcccgataattttaagattcgtgttgatgacaacatgacccaaatttcgggtcgtattcttcctgtccctgttttgaagctaggcggtcaaaatccaccacctaatttgaattataagacatgccagtggaatcttgttgggaaatctgtggtggaaggcaaggcacttcaacgatgggctttgatagattttagctctaagggatgcagggattccttgaagctacaagttgatgaatttgtcgtgaaattgaaagatcggtgcacgcaattgagtattaatatggacatccctgctgtagtacatttaactgacatgaatgagctctctactgttggcaaggttgaaaatctcctcaaagttgtgactgatgcagctgaaaaaaaattacagggtaaacttcaaatgatactttgtgttatgacatcaaagcataatgggtacaagtatcttaagtgggtatctgagacaaaaattggcattgtaacccaatgttgcttgtcttctaatgccaacaagggacataatcaatatattgtcaacctctgtatgaagattaatgcaaaacttgggggcagcaatatggaacttatggaaagactcccaaatttcagaagtgatgacaatgtcatgttcattggagctgatgttaatcatcctgctggcaaggatgctgacaaatatccatccatagcagctgttgttgccaccatcaactggccggctgctaataaatatgccgctagagtttctccacagaaatccaggactgaaaagattatagagtttgggaaaatgtgtaaagacctagttcttacttatgagaaacgcaactctgttaaaccaaacaaaattgttgttttccgtgatggtgtgagtgacagtcagtttgatatggtactcaacgaagagttgactgatctggctaacgctatatacgaaagtaataagtatcaaccagcaatcactcttgttgtggctcagaagagacaccatacacgactatttcctaaggagggaaatgtgtctccgggtactgttgtggatacacaaattgttcatccatctggttttgacttctatctttgcagccactatggacagttgggtactagcaaggcaactcactatcatgttctatatgatgataatggcttcatatctgtcgatttacaacgtcttatatacaacatgtgcttcacttttgcacggtgcactaaacctgtttcacttgttccaccagtttactatgcagaccttgttgcttacaggggacggatgttccaagaggtgcttatggagatgaaatctcctaggtctacgacttcatcctctgaagcttcatcgtcatcatcttcaccaattgactcatttgcacaagaattttatgatttgcaccatgatttgaaggacataatgtttttcgtttgatgacagtccggttcgctctttgatctctttcaccattcccacactggggaggagatggttgtctacattttggagatgcccttttcatcggagtttctaatgggatttcatgcttcttttatttcctgtgtcataatggttttatttactttgagggtgtctggagctggaggccactgcccagtatgtctacttaaattgtgtgatgctttctaatatgtatcgtgagagaaaaagttgaatttcgtttaatgtacttgtttttgagctaaaaaaaaaaaaaaaaaaaaaaa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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