LOCUS       NM_001286332            1121 bp    mRNA    linear   VRT 12-APR-2020
DEFINITION  Haplochromis burtoni distal-less homeobox 2a (dlx2a), mRNA.
ACCESSION   NM_001286332 XM_005921506
VERSION     NM_001286332.1
KEYWORDS    RefSeq.
SOURCE      Haplochromis burtoni (Burton's mouthbrooder)
  ORGANISM  Haplochromis burtoni
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes;
            Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini;
            Haplochromis.
REFERENCE   1  (bases 1 to 1121)
  AUTHORS   Renz AJ, Gunter HM, Fischer JM, Qiu H, Meyer A and Kuraku S.
  TITLE     Ancestral and derived attributes of the dlx gene repertoire,
            cluster structure and expression patterns in an African cichlid
            fish
  JOURNAL   Evodevo 2 (1), 1 (2011)
   PUBMED   21205289
  REMARK    Publication Status: Online-Only
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from FN667597.1.
            
            On Nov 1, 2013 this sequence version replaced XM_005921506.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FN667597.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00628004, SAMN00761590
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1121
                     /organism="Haplochromis burtoni"
                     /mol_type="mRNA"
                     /db_xref="taxon:8153"
     gene            1..1121
                     /gene="dlx2a"
                     /gene_synonym="dlx2"
                     /note="distal-less homeobox 2a"
                     /db_xref="GeneID:102296559"
     exon            1..530
                     /gene="dlx2a"
                     /gene_synonym="dlx2"
                     /inference="alignment:Splign:2.0.8"
     misc_feature    179..181
                     /gene="dlx2a"
                     /gene_synonym="dlx2"
                     /note="upstream in-frame stop codon"
     CDS             212..1042
                     /gene="dlx2a"
                     /gene_synonym="dlx2"
                     /note="distal-less homeobox protein 2a; distal-less
                     homeobox 2"
                     /codon_start=1
                     /product="homeobox protein Dlx2a"
                     /protein_id="NP_001273261.1"
                     /db_xref="GeneID:102296559"
                     /translation="

MTGVFENLNTDMHSNQITSSNYHSLHKSQESPTLPVSTATDSSYYNGQQPGHCAGSPFGQLGTYQYHSSATSSVPYNAKSYDLGFNSSYGTYGSYGSNSSPTPADTEKDESEPEIRMVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNRRSKFKKLWKSGEIPPEQHVASSESPPCTSPPTTAWDFPQTQRMNNVSSSLPQSSSPPNTTAPSSFLANYSWYSTTNSTTHLQPPLVQHHHNSAISAGTIF"

     misc_feature    296..526
                     /gene="dlx2a"
                     /gene_synonym="dlx2"
                     /note="Homeobox protein distal-less-like N terminal;
                     Region: DLL_N; pfam12413"
                     /db_xref="CDD:432536"
     misc_feature    order(587..601,605..607,656..658,674..676,713..715,
                     719..724,731..736,740..748,752..757)
                     /gene="dlx2a"
                     /gene_synonym="dlx2"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    593..754
                     /gene="dlx2a"
                     /gene_synonym="dlx2"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     misc_feature    order(593..595,602..604,722..724,731..736,743..745)
                     /gene="dlx2a"
                     /gene_synonym="dlx2"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     exon            531..715
                     /gene="dlx2a"
                     /gene_synonym="dlx2"
                     /inference="alignment:Splign:2.0.8"
     exon            716..1109
                     /gene="dlx2a"
                     /gene_synonym="dlx2"
                     /inference="alignment:Splign:2.0.8"
ORIGIN      

agcagataatcacaggccactgtgagaaggacacaccttgcgctgattttgccaaggtatacacggggatgcgttttgattcacgaaagggtgtcatcagtgcaagatttgagtcgtgctttacagcctgtcgcgcaatcgcctaggtcgcgatttttgcgatattcttttttccgcataggttagtgggctgctctcccccagttccaagatgactggagttttcgagaacttaaatactgatatgcattcgaaccagattacctcaagcaattaccacagcttgcacaaatcgcaggagtccccgactctgccggtttccacggcgacggacagcagctattacaacggccagcagcctgggcactgcgccgggtcaccgtttggacaactgggcacttaccagtaccacagcagcgccacgagttctgtgccatataacgcaaagtcatacgacctcggtttcaactcatcgtatggtacatacggttcttatggctccaactcatcgccaactcccgcagacacagagaaagatgagagcgagccagaaatccggatggttaatggaaaaccaaagaaggtcaggaaacctcgaaccatttactccagcttccaactggctgcgcttcaacggaggtttcaaaagactcagtatttggctctaccagaacgggccgagctggcagcgtcgctgggccttacgcaaacacaggttaaaatctggttccaaaaccgccgctccaagttcaagaagctgtggaaaagtggagaaatccccccagaacaacatgttgcttccagtgaatctcccccgtgcacgtctccaccaactaccgcctgggactttccacagactcaaagaatgaacaatgtcagctctagtttacctcagagcagcagccctccaaacacgactgcgccttcgtcgtttttggcaaactactcctggtactcaactacgaactctaccacgcatctgcagcctcctctggttcagcatcaccacaactccgccataagcgctgggacaatattttgaaatttaaaagagagagcgagcgagagaacgagaaaacgtcgggtgtaaatcggacaatactggtgaaaaaaaaaaaaaa

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