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2024-03-28 18:25:22, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_001286284            1639 bp    mRNA    linear   VRT 04-JUL-2021
DEFINITION  Haplochromis burtoni distal-less homeobox 6a (dlx6a), mRNA.
ACCESSION   NM_001286284 XM_005928584
VERSION     NM_001286284.1
KEYWORDS    RefSeq.
SOURCE      Haplochromis burtoni (Burton's mouthbrooder)
  ORGANISM  Haplochromis burtoni
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes;
            Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini;
            Haplochromis.
REFERENCE   1  (bases 1 to 1639)
  AUTHORS   Renz AJ, Gunter HM, Fischer JM, Qiu H, Meyer A and Kuraku S.
  TITLE     Ancestral and derived attributes of the dlx gene repertoire,
            cluster structure and expression patterns in an African cichlid
            fish
  JOURNAL   Evodevo 2 (1), 1 (2011)
   PUBMED   21205289
  REMARK    Publication Status: Online-Only
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from FN667602.1.
            
            On Nov 1, 2013 this sequence version replaced XM_005928584.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FN667602.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN14366165 [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1639
                     /organism="Haplochromis burtoni"
                     /mol_type="mRNA"
                     /db_xref="taxon:8153"
     gene            1..1639
                     /gene="dlx6a"
                     /gene_synonym="dlx6"
                     /note="distal-less homeobox 6a"
                     /db_xref="GeneID:102296084"
     exon            1..597
                     /gene="dlx6a"
                     /gene_synonym="dlx6"
                     /inference="alignment:Splign:2.0.8"
     misc_feature    69..71
                     /gene="dlx6a"
                     /gene_synonym="dlx6"
                     /note="upstream in-frame stop codon"
     CDS             291..1031
                     /gene="dlx6a"
                     /gene_synonym="dlx6"
                     /note="distal-less homeobox protein 6a; distal-less
                     homeobox 6"
                     /codon_start=1
                     /product="homeobox protein Dlx6a"
                     /protein_id="NP_001273213.1"
                     /db_xref="GeneID:102296084"
                     /translation="
MMTMTTMADGLEAQDSSKSAFMEFGQQSHSQQSSPSMGSGHYPLHCLHSGSHSHHQHDNTPYPGSNTYNRSLPYPYVSHPHHSPYLPSYHNNMGGQTRLDGTEQQKTTVIENGEIRFNGKGKKIRKPRTIYSSLQLQALNHRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKFKKLLKQGGNPHESEPIPGSMSLSPRSPSIPPIWDVSASSKGVNMPANSYMPGYSHWYSSPHQDSMQR"
     misc_feature    order(663..677,681..683,732..734,750..752,789..791,
                     795..800,807..812,816..824,828..833)
                     /gene="dlx6a"
                     /gene_synonym="dlx6"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    669..830
                     /gene="dlx6a"
                     /gene_synonym="dlx6"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     misc_feature    order(669..671,678..680,798..800,807..812,819..821)
                     /gene="dlx6a"
                     /gene_synonym="dlx6"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     exon            598..791
                     /gene="dlx6a"
                     /gene_synonym="dlx6"
                     /inference="alignment:Splign:2.0.8"
     exon            792..1630
                     /gene="dlx6a"
                     /gene_synonym="dlx6"
                     /inference="alignment:Splign:2.0.8"
ORIGIN      
aaaccattttacttgtagtgtctgcatcaagtctggaagcaagggctcaattttaacagaatccaccttaaaatctctcccttaacttatgcctaccttccaccactttgagtgagaatatcacaggacaagggggggaaataaagacgcctctggaaaaatcgggtgttaataggacaatatctgctcgcggtggagagaggggagagagacaacagcacagcgagagagaaaaaaccgatttggtcttgagagagaggggggtgagtgctctcaaggcagaaaattcgatgatgaccatgactacgatggctgacggtctggaggctcaggactcgtccaagtctgctttcatggagtttggacagcagtcgcactcacagcagagctccccatcgatgggcagcggccactacccgctgcactgtctccactccggctcacactctcaccaccagcacgacaacaccccgtaccccgggagcaacacctacaacaggtcgttaccttacccttacgtgagccatccacaccacagcccgtacctgccgtcctatcacaacaacatgggaggacagacaaggttagacggcacagagcagcagaagacgacagtgatcgaaaacggggagattcgttttaacggcaaaggcaagaagattcgcaaacctcggacaatttattccagtttgcagcttcaagcactgaaccaccgtttccagcaaacacagtacctcgctttaccggagcgcgccgagctggccgcctctctaggactgacgcaaacacaggtaaaaatttggtttcagaataaaaggtcaaagttcaagaagctgctgaagcaaggcggtaacccgcacgagagcgagcccatcccgggctccatgtccctgtccccgcgctctccgagcatccccccaatctgggacgtgtcggcctcatccaaaggagtaaacatgccggccaacagctacatgcccggctactctcactggtattcctccccacatcaagactcaatgcagagatagactgacgacgaaagcaaggtcagggggcctgtcttggagaggcctccggatctcggcaatgcagtttccaacgtagcctacaatttgtgtcagctcagaaactggatgctggagaggagcaggcaacaacaacaacaacaacaacaacgaaaaaaagccccctctctcttccactcctttgctgaaggatgagacacagccaagcctcggtgtgtgatgatgatgacacaaacaagggaactaaccatttttagcgtacatggctgttcagtgggctcgcatttgttttgctttcattcttgtcaccatctgaaccgtcaatataccaaatattatcagtgacattttagccactttggacaaagactgctcacactctctatgcgctgctgtggcgcccagaaaccttttttttttcttttgccatggtggactgctttttttttcaaaattttcttccttcaattttttttccctccctgattgtttttccaacatgcaaaaccaagcaaattgtctgtctgtaaatataatctgcgattttagttgtacatacactttttatgttttgtcagattgagtaaacggtgactcaaaaaaaaaaaaaa
//

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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]