LOCUS       NM_001201491             923 bp    mRNA    linear   VRT 22-JUN-2021
DEFINITION  Oryzias latipes homeobox D9a (hoxd9a), mRNA.
ACCESSION   NM_001201491
VERSION     NM_001201491.1
KEYWORDS    RefSeq.
SOURCE      Oryzias latipes (Japanese medaka)
  ORGANISM  Oryzias latipes
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes;
            Adrianichthyidae; Oryziinae; Oryzias.
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AB026967.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AB026967.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00029887, SAMD00029888
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..923
                     /organism="Oryzias latipes"
                     /mol_type="mRNA"
                     /db_xref="taxon:8090"
                     /chromosome="21"
                     /map="21"
     gene            1..923
                     /gene="hoxd9a"
                     /gene_synonym="hoxd9"
                     /note="homeobox D9a"
                     /db_xref="GeneID:100529156"
     misc_feature    8..10
                     /gene="hoxd9a"
                     /gene_synonym="hoxd9"
                     /note="upstream in-frame stop codon"
     CDS             23..838
                     /gene="hoxd9a"
                     /gene_synonym="hoxd9"
                     /note="homeobox D9"
                     /codon_start=1
                     /product="homeobox protein Hox-D9"
                     /protein_id="NP_001188420.1"
                     /db_xref="GeneID:100529156"
                     /translation="

MSRKRSKMSSSGTISNYYVDGVMAQEPEDVYAPRLIQASHTVTPRPSGAGDNADFSSCNFAPKPGVFSSSWSSVHPQGIYHPYVHHHHQPHLSATDGRYVGVRPWMEPISNHVSFAGFHPSNTRPYGAKPDVLPAKVPECDTLEPEARPVPAEFSCGGALGAEKVTKEQRRASEISSHGEPKDEKQQLDPNNPAANWIHARSTRKKRCPYTKYQTLELEKEFLYNMYLTRDRRFEVARILSLTERQVKIWFQNRRMKMKKMNREKGGKDQL"

     misc_feature    56..592
                     /gene="hoxd9a"
                     /gene_synonym="hoxd9"
                     /note="Hox9 activation region; Region: Hox9_act;
                     pfam04617"
                     /db_xref="CDD:428038"
     misc_feature    503..607
                     /gene="hoxd9a"
                     /gene_synonym="hoxd9"
                     /note="propagated from UniProtKB/Swiss-Prot (Q9PVR2.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    order(632..646,650..652,701..703,719..721,758..760,
                     764..769,776..781,785..793,797..802)
                     /gene="hoxd9a"
                     /gene_synonym="hoxd9"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    638..799
                     /gene="hoxd9a"
                     /gene_synonym="hoxd9"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     misc_feature    order(638..640,647..649,767..769,776..781,788..790)
                     /gene="hoxd9a"
                     /gene_synonym="hoxd9"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
ORIGIN      

gcccgtatgagtgctgtattttatgagtaggaagagatcaaaaatgtcttccagtggcactatcagtaactactatgtggacggcgtgatggctcaggagccggaggatgtttacgcgcctcggcttattcaggcttctcatacggtgaccccgaggccgtcaggtgccggggacaacgcagacttctcttcttgtaatttcgctcctaaacccggagttttctcctcgtcctggtcctctgttcatcctcaggggatttatcatccatatgtgcaccatcaccaccagccgcatctgtccgcaacggacgggagatatgtcggagtccgcccctggatggagcccatttccaaccacgtctcattcgccggcttccaccccagcaacactcgaccgtacggggcgaagccagacgtcctgcctgccaaagttccagaatgcgataccctggagccggaggcgcgaccggtccctgctgaattctcctgcggaggcgcgctgggcgcagagaaggtaacgaaagagcagcgcagagcaagcgagatttcgagtcacggggagccaaaagacgagaaacaacaactcgacccgaacaaccctgctgcaaactggatccacgcgcgctccacgaggaaaaagaggtgtccttacaccaaataccaaactttggagctggagaaggagttcctctacaacatgtatttgaccagagaccggcgctttgaggttgcgcgcatactgagtctaacggagagacaagtgaagatctggttccagaacaggcggatgaaaatgaaaaagatgaacagagaaaaaggcggaaaggaccagctataggtttactcttttttctggtttgtgtctagaaattcttgttttccaacttgctttgataggactgtttttttcttttttttttttt

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