GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2024-03-29 16:50:03, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_001195342             645 bp    mRNA    linear   MAM 20-FEB-2022
DEFINITION  Sus scrofa homeobox A13 (HOXA13), mRNA.
ACCESSION   NM_001195342
VERSION     NM_001195342.1
KEYWORDS    RefSeq.
SOURCE      Sus scrofa (pig)
  ORGANISM  Sus scrofa
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae;
            Sus.
REFERENCE   1  (bases 1 to 645)
  AUTHORS   Lin X, Yan M, Yu W, Ma Y, Zhang L, Wei W and Chen J.
  TITLE     Hoxa11 and Hoxa13 facilitate slow-twitch muscle formation in C2C12
            cells and indirectly affect the lipid deposition of 3T3-L1 cells
  JOURNAL   Anim Sci J 92 (1), e13544 (2021)
   PUBMED   33738916
  REMARK    GeneRIF: Hoxa11 and Hoxa13 facilitate slow-twitch muscle formation
            in C2C12 cells and indirectly affect the lipid deposition of 3T3-L1
            cells.
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from GU373678.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: GU373678.1 [ECO:0000332]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..645
                     /organism="Sus scrofa"
                     /mol_type="mRNA"
                     /db_xref="taxon:9823"
                     /chromosome="18"
                     /map="18"
     gene            1..645
                     /gene="HOXA13"
                     /note="homeobox A13"
                     /db_xref="GeneID:100359352"
                     /db_xref="VGNC:VGNC:88936"
     CDS             1..645
                     /gene="HOXA13"
                     /codon_start=1
                     /product="homeobox protein Hox-A13"
                     /protein_id="NP_001182271.1"
                     /db_xref="GeneID:100359352"
                     /db_xref="VGNC:VGNC:88936"
                     /translation="
MTASVLLHPRWIEPTVMFLYDNGGGLVAAAAFADKYMDTAGPAAEEFSSRAKEFAFYHQGYAPGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQAQPPHLWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVINKLKTTS"
     misc_feature    order(445..459,463..465,514..516,532..534,571..573,
                     577..582,589..594,598..606,610..615)
                     /gene="HOXA13"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    451..612
                     /gene="HOXA13"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     misc_feature    order(451..453,460..462,580..582,589..594,601..603)
                     /gene="HOXA13"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     exon            1..81
                     /gene="HOXA13"
                     /inference="alignment:Splign:2.1.0"
     exon            82..400
                     /gene="HOXA13"
                     /inference="alignment:Splign:2.1.0"
     exon            401..644
                     /gene="HOXA13"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
atgacagcctccgtgctcctccacccccgctggatcgagcccaccgtcatgtttctctacgacaacggcggcggcctggtggccgccgccgccttcgcggacaagtacatggacaccgccggccccgcggccgaggagttcagctcccgcgcaaaggagttcgccttctaccaccagggctacgcacccgggccttaccaccaccatcaacccgtgcctggctacctggatatgccggtggtgccgggcctcgggggccctggcgagtcgcgccacgagcccctgggtcttcccatggaaagctaccagccctgggcgctgcccaacggctggaacggccaaatgtactgccccaaagagcaggcgcagcctccccacctctggaagtccactctgcccgacgtggtctctcatccctcagatgccagctcctacagacgggggagaaagaagcgcgtcccttacaccaaggtgcaattaaaagaactcgaacgggaatacgctacaaacaaattcattaccaaggacaaacggaggcggatatcagccacgacgaatctctccgagcggcaggttacaatctggttccagaacagaagggtcaaagagaaaaaagttatcaacaaactgaagaccactagttaa
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]