2024-03-29 16:50:03, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001195342 645 bp mRNA linear MAM 20-FEB-2022 DEFINITION Sus scrofa homeobox A13 (HOXA13), mRNA. ACCESSION NM_001195342 VERSION NM_001195342.1 KEYWORDS RefSeq. SOURCE Sus scrofa (pig) ORGANISM Sus scrofa Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus. REFERENCE 1 (bases 1 to 645) AUTHORS Lin X, Yan M, Yu W, Ma Y, Zhang L, Wei W and Chen J. TITLE Hoxa11 and Hoxa13 facilitate slow-twitch muscle formation in C2C12 cells and indirectly affect the lipid deposition of 3T3-L1 cells JOURNAL Anim Sci J 92 (1), e13544 (2021) PUBMED 33738916 REMARK GeneRIF: Hoxa11 and Hoxa13 facilitate slow-twitch muscle formation in C2C12 cells and indirectly affect the lipid deposition of 3T3-L1 cells. COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from GU373678.1. ##Evidence-Data-START## Transcript exon combination :: GU373678.1 [ECO:0000332] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..645 /organism="Sus scrofa" /mol_type="mRNA" /db_xref="taxon:9823" /chromosome="18" /map="18" gene 1..645 /gene="HOXA13" /note="homeobox A13" /db_xref="GeneID:100359352" /db_xref="VGNC:VGNC:88936" CDS 1..645 /gene="HOXA13" /codon_start=1 /product="homeobox protein Hox-A13" /protein_id="NP_001182271.1" /db_xref="GeneID:100359352" /db_xref="VGNC:VGNC:88936" /translation="
MTASVLLHPRWIEPTVMFLYDNGGGLVAAAAFADKYMDTAGPAAEEFSSRAKEFAFYHQGYAPGPYHHHQPVPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQAQPPHLWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVINKLKTTS"
misc_feature order(445..459,463..465,514..516,532..534,571..573, 577..582,589..594,598..606,610..615) /gene="HOXA13" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 451..612 /gene="HOXA13" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(451..453,460..462,580..582,589..594,601..603) /gene="HOXA13" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" exon 1..81 /gene="HOXA13" /inference="alignment:Splign:2.1.0" exon 82..400 /gene="HOXA13" /inference="alignment:Splign:2.1.0" exon 401..644 /gene="HOXA13" /inference="alignment:Splign:2.1.0" ORIGIN
atgacagcctccgtgctcctccacccccgctggatcgagcccaccgtcatgtttctctacgacaacggcggcggcctggtggccgccgccgccttcgcggacaagtacatggacaccgccggccccgcggccgaggagttcagctcccgcgcaaaggagttcgccttctaccaccagggctacgcacccgggccttaccaccaccatcaacccgtgcctggctacctggatatgccggtggtgccgggcctcgggggccctggcgagtcgcgccacgagcccctgggtcttcccatggaaagctaccagccctgggcgctgcccaacggctggaacggccaaatgtactgccccaaagagcaggcgcagcctccccacctctggaagtccactctgcccgacgtggtctctcatccctcagatgccagctcctacagacgggggagaaagaagcgcgtcccttacaccaaggtgcaattaaaagaactcgaacgggaatacgctacaaacaaattcattaccaaggacaaacggaggcggatatcagccacgacgaatctctccgagcggcaggttacaatctggttccagaacagaagggtcaaagagaaaaaagttatcaacaaactgaagaccactagttaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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