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2024-03-29 16:25:35, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_001194976            2574 bp    mRNA    linear   MAM 20-FEB-2022
DEFINITION  Sus scrofa argonaute RISC component 1 (AGO1), mRNA.
ACCESSION   NM_001194976
VERSION     NM_001194976.1
KEYWORDS    RefSeq.
SOURCE      Sus scrofa (pig)
  ORGANISM  Sus scrofa
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae;
            Sus.
REFERENCE   1  (bases 1 to 2574)
  AUTHORS   Zhou X, Guo H, Chen K, Cheng H and Zhou R.
  TITLE     Identification, chromosomal mapping and conserved synteny of
            porcine Argonaute family of genes
  JOURNAL   Genetica 138 (7), 805-812 (2010)
   PUBMED   20454920
  REMARK    GeneRIF: Data show that Ago4- Ago1-Ago3 genes are linked together
            at the p12 of the chromosome 6, while Ago2 is located at the p15 of
            the chromosome 4.
REFERENCE   2  (bases 1 to 2574)
  AUTHORS   Uenishi H, Eguchi-Ogawa T, Shinkai H, Okumura N, Suzuki K, Toki D,
            Hamasima N and Awata T.
  TITLE     PEDE (Pig EST Data Explorer) has been expanded into Pig Expression
            Data Explorer, including 10 147 porcine full-length cDNA sequences
  JOURNAL   Nucleic Acids Res. 35 (Database issue), D650-D653 (2007)
   PUBMED   17145712
REFERENCE   3  (bases 1 to 2574)
  AUTHORS   Uenishi H, Eguchi T, Suzuki K, Sawazaki T, Toki D, Shinkai H,
            Okumura N, Hamasima N and Awata T.
  TITLE     PEDE (Pig EST Data Explorer): construction of a database for ESTs
            derived from porcine full-length cDNA libraries
  JOURNAL   Nucleic Acids Res. 32 (Database issue), D484-D488 (2004)
   PUBMED   14681463
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from GQ329714.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: GQ329714.1, SRR5250921.51082.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA103886111, SAMEA103886112
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..2574
                     /organism="Sus scrofa"
                     /mol_type="mRNA"
                     /db_xref="taxon:9823"
                     /chromosome="6"
                     /map="6"
     gene            1..2574
                     /gene="AGO1"
                     /gene_synonym="EIF2C1"
                     /note="argonaute RISC component 1"
                     /db_xref="GeneID:100499510"
     CDS             1..2574
                     /gene="AGO1"
                     /gene_synonym="EIF2C1"
                     /note="eukaryotic translation initiation factor 2C, 1;
                     argonaute RISC catalytic component 1; argonaute 1, RISC
                     catalytic component"
                     /codon_start=1
                     /product="protein argonaute-1"
                     /protein_id="NP_001181905.1"
                     /db_xref="GeneID:100499510"
                     /translation="
MEAGPSGAAAGAYLPPLQQVFQAPRRPGIGTVGKPIKLLANYFEVDIPKIDVYHYEVDIKPDKCPRRVNREVVEYMVQHFKPQIFGDRKPVYDGKRNIYTVTALPIGNERVDFEVTIPGEGKDRIFKVSIKWLAIVSWRMLHEALVSGQIPVPLESVQALDVAMRHLASMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRNIDEQPKPLTDSQRVRFTKEIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMKNASYNLDPYIQEFGIKVKDDMTEVTGRVLPAPILQYGGRNRAIATPNQGVWDMRGKQFYNGIEIKVWAIACFAPQKQCREEVLKNFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVVGSMDAHPSRYCATVRVQRPRQEIIEDLSYMVRELLIQFYKSTRFKPTRIIFYRDGVPEGQLPQILHYELLAIRDACIKLEKDYQPGITYIVVQKRHHTRLFCADKNERIGKSGNIPAGTTVDTNITHPFEFDFYLCSHAGIQGTSRPSHYYVLWDDNRFTADELQILTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKEHDSGEGSHISGQSNGRDPQALAKAVQVHQDTLRTMYFA"
     misc_feature    100..492
                     /gene="AGO1"
                     /gene_synonym="EIF2C1"
                     /note="N-terminal domain of argonaute; Region: ArgoN;
                     pfam16486"
                     /db_xref="CDD:435368"
     misc_feature    520..672
                     /gene="AGO1"
                     /gene_synonym="EIF2C1"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:430160"
     misc_feature    673..1035
                     /gene="AGO1"
                     /gene_synonym="EIF2C1"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(829..831,874..876,916..918,928..930,982..984,
                     1003..1005,1009..1011)
                     /gene="AGO1"
                     /gene_synonym="EIF2C1"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    1168..2445
                     /gene="AGO1"
                     /gene_synonym="EIF2C1"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(1579..1581,1591..1593,1627..1638,1645..1647,
                     1669..1671,1678..1680,1690..1692,1702..1704)
                     /gene="AGO1"
                     /gene_synonym="EIF2C1"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(1783..1785,1789..1791,1999..2001,2413..2415)
                     /gene="AGO1"
                     /gene_synonym="EIF2C1"
                     /note="active site"
                     /db_xref="CDD:240015"
     exon            1..25
                     /gene="AGO1"
                     /gene_synonym="EIF2C1"
                     /inference="alignment:Splign:2.1.0"
     exon            26..209
                     /gene="AGO1"
                     /gene_synonym="EIF2C1"
                     /inference="alignment:Splign:2.1.0"
     exon            210..330
                     /gene="AGO1"
                     /gene_synonym="EIF2C1"
                     /inference="alignment:Splign:2.1.0"
     exon            331..512
                     /gene="AGO1"
                     /gene_synonym="EIF2C1"
                     /inference="alignment:Splign:2.1.0"
     exon            513..649
                     /gene="AGO1"
                     /gene_synonym="EIF2C1"
                     /inference="alignment:Splign:2.1.0"
     exon            650..784
                     /gene="AGO1"
                     /gene_synonym="EIF2C1"
                     /inference="alignment:Splign:2.1.0"
     exon            785..872
                     /gene="AGO1"
                     /gene_synonym="EIF2C1"
                     /inference="alignment:Splign:2.1.0"
     exon            873..1020
                     /gene="AGO1"
                     /gene_synonym="EIF2C1"
                     /inference="alignment:Splign:2.1.0"
     exon            1021..1140
                     /gene="AGO1"
                     /gene_synonym="EIF2C1"
                     /inference="alignment:Splign:2.1.0"
     exon            1141..1263
                     /gene="AGO1"
                     /gene_synonym="EIF2C1"
                     /inference="alignment:Splign:2.1.0"
     exon            1264..1397
                     /gene="AGO1"
                     /gene_synonym="EIF2C1"
                     /inference="alignment:Splign:2.1.0"
     exon            1398..1582
                     /gene="AGO1"
                     /gene_synonym="EIF2C1"
                     /inference="alignment:Splign:2.1.0"
     exon            1583..1742
                     /gene="AGO1"
                     /gene_synonym="EIF2C1"
                     /inference="alignment:Splign:2.1.0"
     exon            1743..1833
                     /gene="AGO1"
                     /gene_synonym="EIF2C1"
                     /inference="alignment:Splign:2.1.0"
     exon            1834..2028
                     /gene="AGO1"
                     /gene_synonym="EIF2C1"
                     /inference="alignment:Splign:2.1.0"
     exon            2029..2163
                     /gene="AGO1"
                     /gene_synonym="EIF2C1"
                     /inference="alignment:Splign:2.1.0"
     exon            2164..2265
                     /gene="AGO1"
                     /gene_synonym="EIF2C1"
                     /inference="alignment:Splign:2.1.0"
     exon            2266..2465
                     /gene="AGO1"
                     /gene_synonym="EIF2C1"
                     /inference="alignment:Splign:2.1.0"
     exon            2466..2574
                     /gene="AGO1"
                     /gene_synonym="EIF2C1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
atggaagcgggaccctcgggagcagctgcgggcgcctacctgccccccctgcagcaggtgttccaggcacctcgccggcctggtattggcactgtggggaaaccaatcaagctcctggccaattactttgaagtggacatccctaagattgacgtctaccactacgaggtggatatcaagccggataagtgtcctcgcagagtcaaccgggaagtggtggaatacatggtccagcatttcaagcctcagatctttggtgatcgcaagcccgtatatgatggaaagaggaatatttacactgtcacagcgctgcccattggcaatgaacgggttgactttgaggtgacaatccctggggaagggaaggatcgaatcttcaaggtctccatcaagtggctagccattgtgagctggcgcatgctgcatgaggccttggtcagtggccagatccctgttcccctggagtctgtgcaagccctggatgtggccatgaggcacctggcatccatgaggtacacccctgtgggccgctccttcttctcaccgcctgagggctactaccacccgctggggggtgggcgcgaggtctggttcggctttcaccagtctgtgcgccctgccatgtggaagatgatgctcaacattgatgtctcagccactgccttctacaaggcgcagccagtgattgagttcatgtgtgaggtgctggacatcaggaacatagatgagcagcccaagcccctcacggactctcagcgtgtacgcttcaccaaggagatcaagggcctgaaggtggaagtgacccactgtggacagatgaagaggaaataccgtgtgtgtaatgttacccgccgccctgccagccatcagacgtttcccttgcagctggagagtggacagactgtggagtgcacagtggcacagtatttcaagcagaaatataacctccagctcaaatatccccacctgccctgtctgcaggttggccaggaacaaaagcatacctaccttcccttagaggtctgtaacattgtggctgggcagcgctgcattaagaagctgactgacaaccagacttcaaccatgataaaggccacagctaggtcggccccagacagacaggaggagatcagccgcctgatgaagaatgccagctacaacctagatccctacatccaagaatttgggatcaaggtgaaggatgacatgacggaagtgacagggcgagtgctgccggcgcccatcttgcagtacggcggccggaaccgggccattgccacacccaatcagggtgtctgggacatgcgggggaagcagttctacaatggaattgagatcaaagtctgggccatcgcttgcttcgcaccccaaaaacagtgtcgagaagaggtgctcaagaacttcacggaccagctgcggaagatttccaaggatgcagggatgcctatccagggccagccttgcttttgcaaatatgcgcagggggcagacagcgtggagcccatgttccggcatctcaagaacacctactcagggctgcagctcattatcgtcatcctgccagggaagacgccagtgtatgctgaagtgaaacgtgttggagatacactcttgggaatggctacacagtgtgtgcaagtgaagaatgtggtgaagacctcacctcagactctgtccaacctctgcctgaagatcaatgtcaagcttggtggcatcaacaacatcctagtcccacaccagcgttctgccgtctttcaacaaccagtgatattcctgggagcggatgttacacaccccccggcaggggacgggaaaaagccttctatcacagcagtcgtaggtagtatggatgcccaccccagccgttactgtgctactgtgcgggtgcagcgaccgcggcaggagatcattgaagatttatcctacatggtacgtgagctgctcatccagttctacaagtccacccgcttcaagcctacccgcatcatcttctaccgagatggggttcctgaaggccagctcccccagatcctccactatgagctgctggccattcgtgatgcctgcatcaaactggaaaaggactaccagcctgggatcacttatattgtggtgcagaaacgccatcatacccgccttttttgtgctgacaagaatgagcgaattgggaagagtggtaacatcccagctgggactactgtggacaccaacatcacccacccatttgagtttgacttctatctgtgcagccacgcaggcatccagggcaccagccgaccatcccattactatgtcctttgggatgacaaccgtttcacagcggatgagctccagatcttgacgtaccagctgtgccacacttatgtacgatgcacacgctccgtctcaattccagcacctgcctactatgcccgcttggtggctttccgggcaagataccacctagtggacaaggagcatgacagtggagaggggagccacatatcggggcagagcaatgggcgggacccccaggccctggccaaagccgtgcaggttcaccaggatactctgcgcaccatgtacttcgcttga
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]