2024-03-29 16:25:35, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001194976 2574 bp mRNA linear MAM 20-FEB-2022 DEFINITION Sus scrofa argonaute RISC component 1 (AGO1), mRNA. ACCESSION NM_001194976 VERSION NM_001194976.1 KEYWORDS RefSeq. SOURCE Sus scrofa (pig) ORGANISM Sus scrofa Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus. REFERENCE 1 (bases 1 to 2574) AUTHORS Zhou X, Guo H, Chen K, Cheng H and Zhou R. TITLE Identification, chromosomal mapping and conserved synteny of porcine Argonaute family of genes JOURNAL Genetica 138 (7), 805-812 (2010) PUBMED 20454920 REMARK GeneRIF: Data show that Ago4- Ago1-Ago3 genes are linked together at the p12 of the chromosome 6, while Ago2 is located at the p15 of the chromosome 4. REFERENCE 2 (bases 1 to 2574) AUTHORS Uenishi H, Eguchi-Ogawa T, Shinkai H, Okumura N, Suzuki K, Toki D, Hamasima N and Awata T. TITLE PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences JOURNAL Nucleic Acids Res. 35 (Database issue), D650-D653 (2007) PUBMED 17145712 REFERENCE 3 (bases 1 to 2574) AUTHORS Uenishi H, Eguchi T, Suzuki K, Sawazaki T, Toki D, Shinkai H, Okumura N, Hamasima N and Awata T. TITLE PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries JOURNAL Nucleic Acids Res. 32 (Database issue), D484-D488 (2004) PUBMED 14681463 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from GQ329714.1. ##Evidence-Data-START## Transcript exon combination :: GQ329714.1, SRR5250921.51082.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA103886111, SAMEA103886112 [ECO:0000348] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..2574 /organism="Sus scrofa" /mol_type="mRNA" /db_xref="taxon:9823" /chromosome="6" /map="6" gene 1..2574 /gene="AGO1" /gene_synonym="EIF2C1" /note="argonaute RISC component 1" /db_xref="GeneID:100499510" CDS 1..2574 /gene="AGO1" /gene_synonym="EIF2C1" /note="eukaryotic translation initiation factor 2C, 1; argonaute RISC catalytic component 1; argonaute 1, RISC catalytic component" /codon_start=1 /product="protein argonaute-1" /protein_id="NP_001181905.1" /db_xref="GeneID:100499510" /translation="
MEAGPSGAAAGAYLPPLQQVFQAPRRPGIGTVGKPIKLLANYFEVDIPKIDVYHYEVDIKPDKCPRRVNREVVEYMVQHFKPQIFGDRKPVYDGKRNIYTVTALPIGNERVDFEVTIPGEGKDRIFKVSIKWLAIVSWRMLHEALVSGQIPVPLESVQALDVAMRHLASMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRNIDEQPKPLTDSQRVRFTKEIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMKNASYNLDPYIQEFGIKVKDDMTEVTGRVLPAPILQYGGRNRAIATPNQGVWDMRGKQFYNGIEIKVWAIACFAPQKQCREEVLKNFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVVGSMDAHPSRYCATVRVQRPRQEIIEDLSYMVRELLIQFYKSTRFKPTRIIFYRDGVPEGQLPQILHYELLAIRDACIKLEKDYQPGITYIVVQKRHHTRLFCADKNERIGKSGNIPAGTTVDTNITHPFEFDFYLCSHAGIQGTSRPSHYYVLWDDNRFTADELQILTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKEHDSGEGSHISGQSNGRDPQALAKAVQVHQDTLRTMYFA"
misc_feature 100..492 /gene="AGO1" /gene_synonym="EIF2C1" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 520..672 /gene="AGO1" /gene_synonym="EIF2C1" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 673..1035 /gene="AGO1" /gene_synonym="EIF2C1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(829..831,874..876,916..918,928..930,982..984, 1003..1005,1009..1011) /gene="AGO1" /gene_synonym="EIF2C1" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1168..2445 /gene="AGO1" /gene_synonym="EIF2C1" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1579..1581,1591..1593,1627..1638,1645..1647, 1669..1671,1678..1680,1690..1692,1702..1704) /gene="AGO1" /gene_synonym="EIF2C1" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1783..1785,1789..1791,1999..2001,2413..2415) /gene="AGO1" /gene_synonym="EIF2C1" /note="active site" /db_xref="CDD:240015" exon 1..25 /gene="AGO1" /gene_synonym="EIF2C1" /inference="alignment:Splign:2.1.0" exon 26..209 /gene="AGO1" /gene_synonym="EIF2C1" /inference="alignment:Splign:2.1.0" exon 210..330 /gene="AGO1" /gene_synonym="EIF2C1" /inference="alignment:Splign:2.1.0" exon 331..512 /gene="AGO1" /gene_synonym="EIF2C1" /inference="alignment:Splign:2.1.0" exon 513..649 /gene="AGO1" /gene_synonym="EIF2C1" /inference="alignment:Splign:2.1.0" exon 650..784 /gene="AGO1" /gene_synonym="EIF2C1" /inference="alignment:Splign:2.1.0" exon 785..872 /gene="AGO1" /gene_synonym="EIF2C1" /inference="alignment:Splign:2.1.0" exon 873..1020 /gene="AGO1" /gene_synonym="EIF2C1" /inference="alignment:Splign:2.1.0" exon 1021..1140 /gene="AGO1" /gene_synonym="EIF2C1" /inference="alignment:Splign:2.1.0" exon 1141..1263 /gene="AGO1" /gene_synonym="EIF2C1" /inference="alignment:Splign:2.1.0" exon 1264..1397 /gene="AGO1" /gene_synonym="EIF2C1" /inference="alignment:Splign:2.1.0" exon 1398..1582 /gene="AGO1" /gene_synonym="EIF2C1" /inference="alignment:Splign:2.1.0" exon 1583..1742 /gene="AGO1" /gene_synonym="EIF2C1" /inference="alignment:Splign:2.1.0" exon 1743..1833 /gene="AGO1" /gene_synonym="EIF2C1" /inference="alignment:Splign:2.1.0" exon 1834..2028 /gene="AGO1" /gene_synonym="EIF2C1" /inference="alignment:Splign:2.1.0" exon 2029..2163 /gene="AGO1" /gene_synonym="EIF2C1" /inference="alignment:Splign:2.1.0" exon 2164..2265 /gene="AGO1" /gene_synonym="EIF2C1" /inference="alignment:Splign:2.1.0" exon 2266..2465 /gene="AGO1" /gene_synonym="EIF2C1" /inference="alignment:Splign:2.1.0" exon 2466..2574 /gene="AGO1" /gene_synonym="EIF2C1" /inference="alignment:Splign:2.1.0" ORIGIN
atggaagcgggaccctcgggagcagctgcgggcgcctacctgccccccctgcagcaggtgttccaggcacctcgccggcctggtattggcactgtggggaaaccaatcaagctcctggccaattactttgaagtggacatccctaagattgacgtctaccactacgaggtggatatcaagccggataagtgtcctcgcagagtcaaccgggaagtggtggaatacatggtccagcatttcaagcctcagatctttggtgatcgcaagcccgtatatgatggaaagaggaatatttacactgtcacagcgctgcccattggcaatgaacgggttgactttgaggtgacaatccctggggaagggaaggatcgaatcttcaaggtctccatcaagtggctagccattgtgagctggcgcatgctgcatgaggccttggtcagtggccagatccctgttcccctggagtctgtgcaagccctggatgtggccatgaggcacctggcatccatgaggtacacccctgtgggccgctccttcttctcaccgcctgagggctactaccacccgctggggggtgggcgcgaggtctggttcggctttcaccagtctgtgcgccctgccatgtggaagatgatgctcaacattgatgtctcagccactgccttctacaaggcgcagccagtgattgagttcatgtgtgaggtgctggacatcaggaacatagatgagcagcccaagcccctcacggactctcagcgtgtacgcttcaccaaggagatcaagggcctgaaggtggaagtgacccactgtggacagatgaagaggaaataccgtgtgtgtaatgttacccgccgccctgccagccatcagacgtttcccttgcagctggagagtggacagactgtggagtgcacagtggcacagtatttcaagcagaaatataacctccagctcaaatatccccacctgccctgtctgcaggttggccaggaacaaaagcatacctaccttcccttagaggtctgtaacattgtggctgggcagcgctgcattaagaagctgactgacaaccagacttcaaccatgataaaggccacagctaggtcggccccagacagacaggaggagatcagccgcctgatgaagaatgccagctacaacctagatccctacatccaagaatttgggatcaaggtgaaggatgacatgacggaagtgacagggcgagtgctgccggcgcccatcttgcagtacggcggccggaaccgggccattgccacacccaatcagggtgtctgggacatgcgggggaagcagttctacaatggaattgagatcaaagtctgggccatcgcttgcttcgcaccccaaaaacagtgtcgagaagaggtgctcaagaacttcacggaccagctgcggaagatttccaaggatgcagggatgcctatccagggccagccttgcttttgcaaatatgcgcagggggcagacagcgtggagcccatgttccggcatctcaagaacacctactcagggctgcagctcattatcgtcatcctgccagggaagacgccagtgtatgctgaagtgaaacgtgttggagatacactcttgggaatggctacacagtgtgtgcaagtgaagaatgtggtgaagacctcacctcagactctgtccaacctctgcctgaagatcaatgtcaagcttggtggcatcaacaacatcctagtcccacaccagcgttctgccgtctttcaacaaccagtgatattcctgggagcggatgttacacaccccccggcaggggacgggaaaaagccttctatcacagcagtcgtaggtagtatggatgcccaccccagccgttactgtgctactgtgcgggtgcagcgaccgcggcaggagatcattgaagatttatcctacatggtacgtgagctgctcatccagttctacaagtccacccgcttcaagcctacccgcatcatcttctaccgagatggggttcctgaaggccagctcccccagatcctccactatgagctgctggccattcgtgatgcctgcatcaaactggaaaaggactaccagcctgggatcacttatattgtggtgcagaaacgccatcatacccgccttttttgtgctgacaagaatgagcgaattgggaagagtggtaacatcccagctgggactactgtggacaccaacatcacccacccatttgagtttgacttctatctgtgcagccacgcaggcatccagggcaccagccgaccatcccattactatgtcctttgggatgacaaccgtttcacagcggatgagctccagatcttgacgtaccagctgtgccacacttatgtacgatgcacacgctccgtctcaattccagcacctgcctactatgcccgcttggtggctttccgggcaagataccacctagtggacaaggagcatgacagtggagaggggagccacatatcggggcagagcaatgggcgggacccccaggccctggccaaagccgtgcaggttcaccaggatactctgcgcaccatgtacttcgcttga
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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