2024-03-28 21:23:29, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001194974 2583 bp mRNA linear MAM 20-FEB-2022 DEFINITION Sus scrofa argonaute RISC catalytic component 3 (AGO3), mRNA. ACCESSION NM_001194974 VERSION NM_001194974.1 KEYWORDS RefSeq. SOURCE Sus scrofa (pig) ORGANISM Sus scrofa Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus. REFERENCE 1 (bases 1 to 2583) AUTHORS Zhou X, Guo H, Chen K, Cheng H and Zhou R. TITLE Identification, chromosomal mapping and conserved synteny of porcine Argonaute family of genes JOURNAL Genetica 138 (7), 805-812 (2010) PUBMED 20454920 REMARK GeneRIF: Data show that Ago4- Ago1-Ago3 genes are linked together at the p12 of the chromosome 6, while Ago2 is located at the p15 of the chromosome 4. COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from GQ329716.1. ##Evidence-Data-START## Transcript exon combination :: GQ329716.1, SRR5250921.256212.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA103886111, SAMEA103886112 [ECO:0000348] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..2583 /organism="Sus scrofa" /mol_type="mRNA" /db_xref="taxon:9823" /chromosome="6" /map="6" gene 1..2583 /gene="AGO3" /gene_synonym="EIF2C3" /note="argonaute RISC catalytic component 3" /db_xref="GeneID:100499509" CDS 1..2583 /gene="AGO3" /gene_synonym="EIF2C3" /EC_number="3.1.26.n2" /note="eukaryotic translation initiation factor 2C, 3; argonaute 3, RISC catalytic component" /codon_start=1 /product="protein argonaute-3" /protein_id="NP_001181903.1" /db_xref="GeneID:100499509" /translation="
MEIGSAGPVGAQPLLMVPRRPGYGTMGKPIKLLANCFQVEIPKIDVYLYEVDIKPDKCPRRVNREVVDSMVQHFKVTIFGDRRPVYDGKRSLYTANPLPVATTGVDLDVTLPGEGGKDRPFKVSIKFVSRVSWHLLHEVLTGRTLPEPLELDKPISTNPVHAVDVVLRHLPSMKYTPVGRSFFSAPEGYDHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIQFMCEVLDIHNIDEQPRPLTDSHRVKFTKEIKGLKVEVTHCGTMRRKYRVCNVTRRPASHQTFPLQLENGQTVERTVAQYFREKYTLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVRSANYETDPFVQEFQFKVRDEMAHVTGRVLPAPMLQYGGRNRTVATPSHGVWDMRGKQFHTGVEIKMWAIACFATQRQCREEILKGFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMLRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVIKTSPQTLSNLCLKINVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATVRVQRPRQEIIQDLASMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFRQVLYYELLAIREACISLEKDYQPGITYIVVQKRHHTRLFCADRTERVGRSGNIPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHVSGQSNGRDPQALAKAVQIHQDTLRTMYFA"
misc_feature 217..501 /gene="AGO3" /gene_synonym="EIF2C3" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 529..681 /gene="AGO3" /gene_synonym="EIF2C3" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 682..1044 /gene="AGO3" /gene_synonym="EIF2C3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(838..840,883..885,925..927,937..939,991..993, 1012..1014,1018..1020) /gene="AGO3" /gene_synonym="EIF2C3" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1177..2454 /gene="AGO3" /gene_synonym="EIF2C3" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1588..1590,1600..1602,1636..1647,1654..1656, 1678..1680,1687..1689,1699..1701,1711..1713) /gene="AGO3" /gene_synonym="EIF2C3" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1792..1794,1798..1800,2008..2010,2422..2424) /gene="AGO3" /gene_synonym="EIF2C3" /note="active site" /db_xref="CDD:240015" exon 1..19 /gene="AGO3" /gene_synonym="EIF2C3" /inference="alignment:Splign:2.1.0" exon 20..191 /gene="AGO3" /gene_synonym="EIF2C3" /inference="alignment:Splign:2.1.0" exon 192..312 /gene="AGO3" /gene_synonym="EIF2C3" /inference="alignment:Splign:2.1.0" exon 313..521 /gene="AGO3" /gene_synonym="EIF2C3" /inference="alignment:Splign:2.1.0" exon 522..658 /gene="AGO3" /gene_synonym="EIF2C3" /inference="alignment:Splign:2.1.0" exon 659..793 /gene="AGO3" /gene_synonym="EIF2C3" /inference="alignment:Splign:2.1.0" exon 794..881 /gene="AGO3" /gene_synonym="EIF2C3" /inference="alignment:Splign:2.1.0" exon 882..1029 /gene="AGO3" /gene_synonym="EIF2C3" /inference="alignment:Splign:2.1.0" exon 1030..1149 /gene="AGO3" /gene_synonym="EIF2C3" /inference="alignment:Splign:2.1.0" exon 1150..1272 /gene="AGO3" /gene_synonym="EIF2C3" /inference="alignment:Splign:2.1.0" exon 1273..1406 /gene="AGO3" /gene_synonym="EIF2C3" /inference="alignment:Splign:2.1.0" exon 1407..1591 /gene="AGO3" /gene_synonym="EIF2C3" /inference="alignment:Splign:2.1.0" exon 1592..1751 /gene="AGO3" /gene_synonym="EIF2C3" /inference="alignment:Splign:2.1.0" exon 1752..1842 /gene="AGO3" /gene_synonym="EIF2C3" /inference="alignment:Splign:2.1.0" exon 1843..2037 /gene="AGO3" /gene_synonym="EIF2C3" /inference="alignment:Splign:2.1.0" exon 2038..2172 /gene="AGO3" /gene_synonym="EIF2C3" /inference="alignment:Splign:2.1.0" exon 2173..2274 /gene="AGO3" /gene_synonym="EIF2C3" /inference="alignment:Splign:2.1.0" exon 2275..2474 /gene="AGO3" /gene_synonym="EIF2C3" /inference="alignment:Splign:2.1.0" exon 2475..2583 /gene="AGO3" /gene_synonym="EIF2C3" /inference="alignment:Splign:2.1.0" ORIGIN
atggaaatcggctccgcaggacccgttggggcccagcccctactcatggtgcccagaagacctggctatggcaccatgggcaaacccattaaattgctggctaactgttttcaagttgaaatcccaaagattgatgtctacctctatgaggtagatattaaacctgacaagtgtcctagaagagtgaacagggaggtggttgactcaatggttcagcattttaaagtaactatatttggggaccgtagaccagtttatgatggaaaaagaagcctttacacagccaatccacttcctgtggcaactactggggtagatttagatgttactttgcctggggaaggtggaaaagatcgacctttcaaggtgtcaatcaaatttgtctctcgggtgagttggcacctactacatgaagtactgacaggacggaccttgcctgagccactggaattagacaagccaatcagcactaatcctgtgcatgctgttgatgtggtgctacgacatctgccctccatgaaatatacgcctgtggggcgttcctttttctcagctccagaaggatatgaccaccctctaggagggggcagggaagtttggtttggattccatcagtctgttcggcctgccatgtggaaaatgatgcttaatattgatgtttctgccactgccttctacaaagcacaacctgtaattcagttcatgtgtgaagttcttgacattcataatattgatgaacaaccaagacctctgactgattctcatcgggtaaaattcaccaaagagataaaaggtctgaaggttgaagtgactcattgtggaacaatgagacggaaataccgtgtttgtaatgtaacaagaaggcctgccagtcatcaaacctttcctttacagttagaaaatggccaaaccgtggagagaacagtagcacagtatttcagagaaaagtatactcttcagctgaagtacccacatcttccctgtctgcaagtggggcaggagcagaaacatacctatctgccactagaagtctgtaacattgtggcagggcagcgatgtatcaagaagctaacagacaatcaaacctccactatgatcaaagcaacagcaagatctgcaccagatagacaagaggaaattagcagattggtaagaagtgcaaattatgagacagatccatttgttcaggagtttcaatttaaagttcgggatgaaatggcccacgtaaccggacgtgtacttccagcacctatgctacagtatggaggccggaatcggacagtagcaacaccaagccacggagtatgggacatgagagggaaacaattccacacaggagttgaaatcaaaatgtgggctatagcttgttttgccacacagaggcagtgccgagaagaaatattgaagggtttcacggaccagctgcgtaagatttccaaagatgcagggatgcctatccagggccagccttgcttctgcaaatatgcgcaaggggcagacagcgtggagcccatgctccggcatctcaagaacacctactctgggctgcagctcattattgtcatcctgccaggaaagacgccagtgtatgcggaggtgaaacgtgttggagatacacttttgggtatggccacacaatgtgttcaagtcaagaatgtaataaaaacatcccctcaaactctctcaaatctgtgcctaaagataaatgttaaacttggagggatcaataatattcttgtacctcatcaaagaccttctgtgttccagcaaccagtgatttttttgggagcagatgtcactcatccaccagccggtgatgggaagaagccttctattgctgctgttgtaggtagtatggatgcccacccaagcagatactgtgctacagtaagagttcagagaccccgtcaggagatcatccaggaccttgcctccatggtccgagaacttctcattcaattttataagtcaactcggttcaaacctactcgtatcatcttttatcgggatggtgtttcagaggggcaatttaggcaggtattgtattatgaactactagcaattcgggaagcctgcatcagtttggagaaagactatcaacctggaataacttacattgtagttcagaagagacatcacactcgattattttgtgctgataggactgaaagggttggaagaagtggaaatatcccagctggaacaacagttgatacagacattacacacccatatgagtttgatttttacctctgtagccatgctggaatacagggtaccagccgtccttcacactatcatgttttatgggatgataactgctttactgcagatgaacttcagctgctaacttaccagctctgccacacttatgtgcgctgtacacgatctgtttctatacctgcaccagcgtattatgctcacctggtagcatttagagccagatatcatctcgtggacaaagagcatgacagtgctgaaggaagtcatgtttcaggacagagcaacggacgagatccacaagctcttgccaaggctgtacaaattcaccaagataccttacgcacaatgtactttgcttaa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]