GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2024-03-28 21:23:29, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_001194974            2583 bp    mRNA    linear   MAM 20-FEB-2022
DEFINITION  Sus scrofa argonaute RISC catalytic component 3 (AGO3), mRNA.
ACCESSION   NM_001194974
VERSION     NM_001194974.1
KEYWORDS    RefSeq.
SOURCE      Sus scrofa (pig)
  ORGANISM  Sus scrofa
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae;
            Sus.
REFERENCE   1  (bases 1 to 2583)
  AUTHORS   Zhou X, Guo H, Chen K, Cheng H and Zhou R.
  TITLE     Identification, chromosomal mapping and conserved synteny of
            porcine Argonaute family of genes
  JOURNAL   Genetica 138 (7), 805-812 (2010)
   PUBMED   20454920
  REMARK    GeneRIF: Data show that Ago4- Ago1-Ago3 genes are linked together
            at the p12 of the chromosome 6, while Ago2 is located at the p15 of
            the chromosome 4.
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from GQ329716.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: GQ329716.1, SRR5250921.256212.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA103886111, SAMEA103886112
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..2583
                     /organism="Sus scrofa"
                     /mol_type="mRNA"
                     /db_xref="taxon:9823"
                     /chromosome="6"
                     /map="6"
     gene            1..2583
                     /gene="AGO3"
                     /gene_synonym="EIF2C3"
                     /note="argonaute RISC catalytic component 3"
                     /db_xref="GeneID:100499509"
     CDS             1..2583
                     /gene="AGO3"
                     /gene_synonym="EIF2C3"
                     /EC_number="3.1.26.n2"
                     /note="eukaryotic translation initiation factor 2C, 3;
                     argonaute 3, RISC catalytic component"
                     /codon_start=1
                     /product="protein argonaute-3"
                     /protein_id="NP_001181903.1"
                     /db_xref="GeneID:100499509"
                     /translation="
MEIGSAGPVGAQPLLMVPRRPGYGTMGKPIKLLANCFQVEIPKIDVYLYEVDIKPDKCPRRVNREVVDSMVQHFKVTIFGDRRPVYDGKRSLYTANPLPVATTGVDLDVTLPGEGGKDRPFKVSIKFVSRVSWHLLHEVLTGRTLPEPLELDKPISTNPVHAVDVVLRHLPSMKYTPVGRSFFSAPEGYDHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIQFMCEVLDIHNIDEQPRPLTDSHRVKFTKEIKGLKVEVTHCGTMRRKYRVCNVTRRPASHQTFPLQLENGQTVERTVAQYFREKYTLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVRSANYETDPFVQEFQFKVRDEMAHVTGRVLPAPMLQYGGRNRTVATPSHGVWDMRGKQFHTGVEIKMWAIACFATQRQCREEILKGFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMLRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVIKTSPQTLSNLCLKINVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATVRVQRPRQEIIQDLASMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFRQVLYYELLAIREACISLEKDYQPGITYIVVQKRHHTRLFCADRTERVGRSGNIPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHVSGQSNGRDPQALAKAVQIHQDTLRTMYFA"
     misc_feature    217..501
                     /gene="AGO3"
                     /gene_synonym="EIF2C3"
                     /note="N-terminal domain of argonaute; Region: ArgoN;
                     pfam16486"
                     /db_xref="CDD:435368"
     misc_feature    529..681
                     /gene="AGO3"
                     /gene_synonym="EIF2C3"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:430160"
     misc_feature    682..1044
                     /gene="AGO3"
                     /gene_synonym="EIF2C3"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(838..840,883..885,925..927,937..939,991..993,
                     1012..1014,1018..1020)
                     /gene="AGO3"
                     /gene_synonym="EIF2C3"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    1177..2454
                     /gene="AGO3"
                     /gene_synonym="EIF2C3"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(1588..1590,1600..1602,1636..1647,1654..1656,
                     1678..1680,1687..1689,1699..1701,1711..1713)
                     /gene="AGO3"
                     /gene_synonym="EIF2C3"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(1792..1794,1798..1800,2008..2010,2422..2424)
                     /gene="AGO3"
                     /gene_synonym="EIF2C3"
                     /note="active site"
                     /db_xref="CDD:240015"
     exon            1..19
                     /gene="AGO3"
                     /gene_synonym="EIF2C3"
                     /inference="alignment:Splign:2.1.0"
     exon            20..191
                     /gene="AGO3"
                     /gene_synonym="EIF2C3"
                     /inference="alignment:Splign:2.1.0"
     exon            192..312
                     /gene="AGO3"
                     /gene_synonym="EIF2C3"
                     /inference="alignment:Splign:2.1.0"
     exon            313..521
                     /gene="AGO3"
                     /gene_synonym="EIF2C3"
                     /inference="alignment:Splign:2.1.0"
     exon            522..658
                     /gene="AGO3"
                     /gene_synonym="EIF2C3"
                     /inference="alignment:Splign:2.1.0"
     exon            659..793
                     /gene="AGO3"
                     /gene_synonym="EIF2C3"
                     /inference="alignment:Splign:2.1.0"
     exon            794..881
                     /gene="AGO3"
                     /gene_synonym="EIF2C3"
                     /inference="alignment:Splign:2.1.0"
     exon            882..1029
                     /gene="AGO3"
                     /gene_synonym="EIF2C3"
                     /inference="alignment:Splign:2.1.0"
     exon            1030..1149
                     /gene="AGO3"
                     /gene_synonym="EIF2C3"
                     /inference="alignment:Splign:2.1.0"
     exon            1150..1272
                     /gene="AGO3"
                     /gene_synonym="EIF2C3"
                     /inference="alignment:Splign:2.1.0"
     exon            1273..1406
                     /gene="AGO3"
                     /gene_synonym="EIF2C3"
                     /inference="alignment:Splign:2.1.0"
     exon            1407..1591
                     /gene="AGO3"
                     /gene_synonym="EIF2C3"
                     /inference="alignment:Splign:2.1.0"
     exon            1592..1751
                     /gene="AGO3"
                     /gene_synonym="EIF2C3"
                     /inference="alignment:Splign:2.1.0"
     exon            1752..1842
                     /gene="AGO3"
                     /gene_synonym="EIF2C3"
                     /inference="alignment:Splign:2.1.0"
     exon            1843..2037
                     /gene="AGO3"
                     /gene_synonym="EIF2C3"
                     /inference="alignment:Splign:2.1.0"
     exon            2038..2172
                     /gene="AGO3"
                     /gene_synonym="EIF2C3"
                     /inference="alignment:Splign:2.1.0"
     exon            2173..2274
                     /gene="AGO3"
                     /gene_synonym="EIF2C3"
                     /inference="alignment:Splign:2.1.0"
     exon            2275..2474
                     /gene="AGO3"
                     /gene_synonym="EIF2C3"
                     /inference="alignment:Splign:2.1.0"
     exon            2475..2583
                     /gene="AGO3"
                     /gene_synonym="EIF2C3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
atggaaatcggctccgcaggacccgttggggcccagcccctactcatggtgcccagaagacctggctatggcaccatgggcaaacccattaaattgctggctaactgttttcaagttgaaatcccaaagattgatgtctacctctatgaggtagatattaaacctgacaagtgtcctagaagagtgaacagggaggtggttgactcaatggttcagcattttaaagtaactatatttggggaccgtagaccagtttatgatggaaaaagaagcctttacacagccaatccacttcctgtggcaactactggggtagatttagatgttactttgcctggggaaggtggaaaagatcgacctttcaaggtgtcaatcaaatttgtctctcgggtgagttggcacctactacatgaagtactgacaggacggaccttgcctgagccactggaattagacaagccaatcagcactaatcctgtgcatgctgttgatgtggtgctacgacatctgccctccatgaaatatacgcctgtggggcgttcctttttctcagctccagaaggatatgaccaccctctaggagggggcagggaagtttggtttggattccatcagtctgttcggcctgccatgtggaaaatgatgcttaatattgatgtttctgccactgccttctacaaagcacaacctgtaattcagttcatgtgtgaagttcttgacattcataatattgatgaacaaccaagacctctgactgattctcatcgggtaaaattcaccaaagagataaaaggtctgaaggttgaagtgactcattgtggaacaatgagacggaaataccgtgtttgtaatgtaacaagaaggcctgccagtcatcaaacctttcctttacagttagaaaatggccaaaccgtggagagaacagtagcacagtatttcagagaaaagtatactcttcagctgaagtacccacatcttccctgtctgcaagtggggcaggagcagaaacatacctatctgccactagaagtctgtaacattgtggcagggcagcgatgtatcaagaagctaacagacaatcaaacctccactatgatcaaagcaacagcaagatctgcaccagatagacaagaggaaattagcagattggtaagaagtgcaaattatgagacagatccatttgttcaggagtttcaatttaaagttcgggatgaaatggcccacgtaaccggacgtgtacttccagcacctatgctacagtatggaggccggaatcggacagtagcaacaccaagccacggagtatgggacatgagagggaaacaattccacacaggagttgaaatcaaaatgtgggctatagcttgttttgccacacagaggcagtgccgagaagaaatattgaagggtttcacggaccagctgcgtaagatttccaaagatgcagggatgcctatccagggccagccttgcttctgcaaatatgcgcaaggggcagacagcgtggagcccatgctccggcatctcaagaacacctactctgggctgcagctcattattgtcatcctgccaggaaagacgccagtgtatgcggaggtgaaacgtgttggagatacacttttgggtatggccacacaatgtgttcaagtcaagaatgtaataaaaacatcccctcaaactctctcaaatctgtgcctaaagataaatgttaaacttggagggatcaataatattcttgtacctcatcaaagaccttctgtgttccagcaaccagtgatttttttgggagcagatgtcactcatccaccagccggtgatgggaagaagccttctattgctgctgttgtaggtagtatggatgcccacccaagcagatactgtgctacagtaagagttcagagaccccgtcaggagatcatccaggaccttgcctccatggtccgagaacttctcattcaattttataagtcaactcggttcaaacctactcgtatcatcttttatcgggatggtgtttcagaggggcaatttaggcaggtattgtattatgaactactagcaattcgggaagcctgcatcagtttggagaaagactatcaacctggaataacttacattgtagttcagaagagacatcacactcgattattttgtgctgataggactgaaagggttggaagaagtggaaatatcccagctggaacaacagttgatacagacattacacacccatatgagtttgatttttacctctgtagccatgctggaatacagggtaccagccgtccttcacactatcatgttttatgggatgataactgctttactgcagatgaacttcagctgctaacttaccagctctgccacacttatgtgcgctgtacacgatctgtttctatacctgcaccagcgtattatgctcacctggtagcatttagagccagatatcatctcgtggacaaagagcatgacagtgctgaaggaagtcatgtttcaggacagagcaacggacgagatccacaagctcttgccaaggctgtacaaattcaccaagataccttacgcacaatgtactttgcttaa
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]