2024-04-19 16:35:43, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001194860 2310 bp mRNA linear PRI 10-JUL-2020 DEFINITION Macaca mulatta claudin 12 (CLDN12), mRNA. ACCESSION NM_001194860 XM_002803388 VERSION NM_001194860.2 KEYWORDS RefSeq. SOURCE Macaca mulatta (Rhesus monkey) ORGANISM Macaca mulatta Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca. REFERENCE 1 (bases 1 to 2310) AUTHORS Zimin AV, Cornish AS, Maudhoo MD, Gibbs RM, Zhang X, Pandey S, Meehan DT, Wipfler K, Bosinger SE, Johnson ZP, Tharp GK, Marcais G, Roberts M, Ferguson B, Fox HS, Treangen T, Salzberg SL, Yorke JA and Norgren RB Jr. TITLE A new rhesus macaque assembly and annotation for next-generation sequencing analyses JOURNAL Biol. Direct 9 (1), 20 (2014) PUBMED 25319552 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2310) AUTHORS Yan G, Zhang G, Fang X, Zhang Y, Li C, Ling F, Cooper DN, Li Q, Li Y, van Gool AJ, Du H, Chen J, Chen R, Zhang P, Huang Z, Thompson JR, Meng Y, Bai Y, Wang J, Zhuo M, Wang T, Huang Y, Wei L, Li J, Wang Z, Hu H, Yang P, Le L, Stenson PD, Li B, Liu X, Ball EV, An N, Huang Q, Zhang Y, Fan W, Zhang X, Li Y, Wang W, Katze MG, Su B, Nielsen R, Yang H, Wang J, Wang X and Wang J. TITLE Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques JOURNAL Nat. Biotechnol. 29 (11), 1019-1023 (2011) PUBMED 22002653 REMARK Publication Status: Online-Only COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from QNVO02000313.1. On Dec 12, 2019 this sequence version replaced NM_001194860.1. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## CDS exon combination :: JU496000.1 [ECO:0000331] RNAseq introns :: single sample supports all introns SAMEA4688316, SAMEA4688317 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-116 QNVO02000313.1 30925708-30925823 117-206 QNVO02000313.1 30927682-30927771 207-2310 QNVO02000313.1 30935644-30937747 FEATURES Location/Qualifiers source 1..2310 /organism="Macaca mulatta" /mol_type="mRNA" /db_xref="taxon:9544" /chromosome="3" /map="3" gene 1..2310 /gene="CLDN12" /gene_synonym="claudin-12" /note="claudin 12" /db_xref="GeneID:704058" /db_xref="VGNC:VGNC:71244" exon 1..116 /gene="CLDN12" /gene_synonym="claudin-12" /inference="alignment:Splign:2.1.0" exon 117..206 /gene="CLDN12" /gene_synonym="claudin-12" /inference="alignment:Splign:2.1.0" exon 207..2310 /gene="CLDN12" /gene_synonym="claudin-12" /inference="alignment:Splign:2.1.0" misc_feature 213..215 /gene="CLDN12" /gene_synonym="claudin-12" /note="upstream in-frame stop codon" CDS 240..974 /gene="CLDN12" /gene_synonym="claudin-12" /codon_start=1 /product="claudin-12" /protein_id="NP_001181789.1" /db_xref="GeneID:704058" /db_xref="VGNC:VGNC:71244" /translation="
MGCRDVHAATVLSFLCGIASVAGLFAGTLLPNWRKLRLITFNRNEKNLTVYTGLWVKCARYDGSSDCLMYDTTWYSSVDQLDLRVLQFALPLSMLIAMGALLLCLIGMCNTAFRSSVPNIKLAKCLVNSAGCHLVAGLLFFLAGTVSLSPSIWVIFYNIHLNKKFEPVFSFDYAVYVTIASAGGLFMTSLILFIWYCTCKSLPSPFWQPLYSHPPSMHTYSQPYSARSRLSAIEIDIPVVSHTT"
ORIGIN
gttccgatttctgggtcttttgcataagtaactgaggattttatgtaaaatagctaaatccaggggaatcgggagcattggaaaacgctgaccacatctgtggatgtgaaaattgagctcagattattgctactgtgtattcagatctgcatgtttatcttctaagctgaataaagttgttttggaactgtcgggtacctcaaaggtctgactgacagcactccacaagcttgcctgccatgggctgtcgggatgtccacgcagccacagtcctttccttcctatgtggaatcgcctcagtagcaggcctctttgcagggactctgcttcccaactggagaaaattacgattgatcacattcaacagaaacgagaagaacctgactgtttacacaggcctgtgggtgaaatgtgcccggtatgacgggagcagtgactgcctgatgtacgacactacttggtactcatcagttgaccagctggacctgcgtgtcctccagtttgccctacccctcagcatgttgatcgccatgggtgccctgctgctctgcctgattggaatgtgcaacactgccttcaggtcctcggtgcccaacatcaaactggccaagtgtctggtcaatagtgcaggttgccacctggtggctgggctgctatttttcctggcaggtactgtgagcctctccccatctatctgggtcatcttttataacatccatctgaacaagaagtttgagccagtcttttcatttgactatgcagtgtatgtcactattgctagtgctgggggcctgtttatgacttcccttatactgtttatttggtattgtacatgcaaatctttgccttctcctttctggcaaccactgtactcccatccacccagtatgcatacttactcacagccctattcagcacgctctcgcctctctgccattgaaattgacattccagtagtttcacacaccacttaatggggaaatagttaattgttaaagaaaacttcttgtagcctcacattccccttgtgcaaggagctcttttggacctatatacattttcctttgtttttgaccaatcaatgaagccaaatttgtatgtcctggtagaatgaagtgctgctagtttttatgagaagtacattatattaaatgtgaatttttttattttgcttcttatactggaaggaattttagccttcatattgatatctaattaattatttaagtggaagaggcctgcatcacaattgaggtgatttagagcaacatgttaaagaatcatggttagcagaagctgttgcatacaatcttcatgaatatttcagtgtgtatttttctttttctataatacctttaactgcaaagaaaaggcagtttcaaatataagaaatttatttcaggtaagggtaatattttaatagtagtcaataatctagcttaaggctgtaactcttctctctcggggctaattgtatgaataggtgtcagtatattgaagattactttcttttgtgactttcttctacctcatgccagtgtttaaaagtaaaatgtattttaaatgatgttagactaagaccaccattctaaatatcacctacttatgaataacatataatactttttaacattaatgattccataaattgtgttattgggattagaatgtgctttatgacaggttagtgtttcctctgaggcagaaaacccttttttggagatatcatccatcaagcagtactcatgcccgtatacaatctcttagtggctaagagaagtaaataaaagggccataatcatttgctctctttcagacataatttagtaggggacaagaagtctgttcttcagtgactacaatagagatttactctgctgactgccttttgagttatgggtgatgtaaggtatggctttaccataaccttgattcattcacccttgattcatttcccacccctgtcactgattatttccttgagcatatatctctgcctaacactttagtaggtgctatagaggatatatgaaaagtatgagatctggtcccatccagtaagacattttaatagagaagatcaaaatgttacctgatggttggggaatagtctgacttcattggcagttggccttaacttcttaatcattgatccaggaatatttcaaccagaggcacaactttctggcagacagacaaattgtacaacaccaacaatatcctggaccttgaaattctgtttacttcagtccattgtatccttaaggcacctgtgctagcctagattttgtaatagcattgatttatgag
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]