2024-03-28 19:09:15, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001165009 1821 bp mRNA linear INV 04-MAY-2019 DEFINITION Saccoglossus kowalevskii dorsal root ganglia homeobox (drgx), mRNA. ACCESSION NM_001165009 VERSION NM_001165009.1 KEYWORDS RefSeq. SOURCE Saccoglossus kowalevskii ORGANISM Saccoglossus kowalevskii Eukaryota; Metazoa; Hemichordata; Enteropneusta; Harrimaniidae; Saccoglossus. COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from EU939741.1. ##Evidence-Data-START## Transcript exon combination :: EU939741.1 [ECO:0000332] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..1821 /organism="Saccoglossus kowalevskii" /mol_type="mRNA" /db_xref="taxon:10224" gene 1..1821 /gene="drgx" /note="dorsal root ganglia homeobox" /db_xref="GeneID:100303573" exon 1..128 /gene="drgx" /inference="alignment:Splign:1.39.8" exon 129..462 /gene="drgx" /inference="alignment:Splign:1.39.8" misc_feature 258..260 /gene="drgx" /note="upstream in-frame stop codon" CDS 357..1343 /gene="drgx" /note="dorsal root ganglion homeobox protein" /codon_start=1 /product="dorsal root ganglia homeobox" /protein_id="NP_001158481.1" /db_xref="GeneID:100303573" /translation="
MFCYHCPIPAASYPYFEQRVPTGNNAPLPSVVPPIFSTSSYANHHEFDDTFLRRKQRRNRTTFTAQQLEELESAFGRTHYPDVFTREDLAVKINLTEARVQVWFQNRRAKWRKTEKGRPDETRDSENDRPISVDEDSDTTNVQEQTNFEIATDNPVCKEDDHLDEQLASVSPTLKSAPLLWKPGRVSSPVGSCDFPVEDNDKYCKADSRSSTPTEQSDNDACEGRLAERDITPGDVMKSTSDDTLRRDTYNNKCTSPVVKVSSLGTAAINSPQLQAECQSKFLSLYSPYHVPVQHKTSSVAELRQKAKDYTNALMGAMLYNRNGFSPR"
misc_feature order(525..539,543..545,594..596,612..614,651..653, 657..662,669..674,678..686,690..695) /gene="drgx" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(531..533,540..542,660..662,669..674,681..683) /gene="drgx" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 534..692 /gene="drgx" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" exon 463..557 /gene="drgx" /inference="alignment:Splign:1.39.8" exon 558..659 /gene="drgx" /inference="alignment:Splign:1.39.8" exon 660..982 /gene="drgx" /inference="alignment:Splign:1.39.8" exon 983..1149 /gene="drgx" /inference="alignment:Splign:1.39.8" exon 1150..1704 /gene="drgx" /inference="alignment:Splign:1.39.8" ORIGIN
agacaaggggaatgcttcgagcgattcatcataaacaactgcgtattctagcaaagccataatatcttcgttttctttatatattgtcatttcaagaggagctgtgttcctgtgcgtatctgcattagatattatactttcgctgtcgtcttggtaacagatggacgcatatggtgttgcattgtgggatatgctaattcagaattcagaagtagagctgtcaacttaatcttattggtggagatagtagcggttgctgattagaaagaggctgtccaaacttcaacttcaatcgacgcactgccacgcacaaggccggatactctatacgcgacccaaacccgtccgtcgccaacatgttctgttatcattgtccgattcccgctgctagctacccgtattttgagcaacgagtgccgacagggaataatgctcctctaccttctgtcgtgccgcctatattttcgacatcatcttacgcaaaccaccatgaatttgatgacactttcttgcgtaggaaacagcgcagaaacaggaccacgtttacagcccagcagctggaagaattagaatcggcatttggcaggacacattacccggatgtattcacgcgagaagacctcgcagtcaaaatcaacctaacagaggcacgtgtacaggtttggttccaaaataggcgagcgaaatggcgaaaaaccgagaagggccgcccagacgaaacacgtgatagcgaaaacgatagaccgatttctgtggacgaggacagtgacactacaaacgtccaagagcaaacgaactttgaaattgcaactgacaaccctgtatgtaaagaagacgatcacctagacgaacaactagcaagtgtttcccccaccctaaaatcagctccattactatggaaaccaggaagagtatcatctccagtcgggtcatgtgatttccccgtggaagacaatgacaaatattgtaaagcggactcaagatctagtacaccgaccgagcagagcgacaatgatgcatgtgaaggtagattggcagaaagagatatcactcccggtgacgtaatgaaatctaccagtgatgatactctacgaagagatacttacaacaataaatgcacgtcgcctgtggtgaaagtatcgtcgttagggacggcagccattaactcgccacaactacaagcagagtgtcaatcaaaatttctttcgctatactcgccttatcacgtgccagttcagcacaaaacatcaagcgtcgctgaacttcgccagaaagccaaggattacacaaatgctctgatgggtgctatgttatataatcgcaatgggttctccccgcggtaacaaacattacgtcatctttacactgctagcatagtgacatgtcaggagtttcttttaatctttttcttatacatggatgaaaaatcacgtgtggtcatacctaacttatggcgcttatgatatcaccgtctttatgtcatctctcttcgcacaacctaattcagtacttactgcaatacgagaagcagtaacacttttattcaaatttgttgtcgtatatttgttttctgatttcatatcaaactcggatgttgcgtcgcttatgcttacgccgtctggccgtttcacgcttaaaataaaagatgttcgtctttggaacactgctgtaaatattctattaaataactttcagcaatacaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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