2024-03-29 19:15:17, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001161638 954 bp mRNA linear MAM 19-FEB-2022 DEFINITION Sus scrofa claudin 2 (CLDN2), mRNA. ACCESSION NM_001161638 VERSION NM_001161638.1 KEYWORDS RefSeq. SOURCE Sus scrofa (pig) ORGANISM Sus scrofa Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus. REFERENCE 1 (bases 1 to 954) AUTHORS Uenishi H, Eguchi T, Suzuki K, Sawazaki T, Toki D, Shinkai H, Okumura N, Hamasima N and Awata T. TITLE PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries JOURNAL Nucleic Acids Res. 32 (Database issue), D484-D488 (2004) PUBMED 14681463 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from FJ873110.1. ##Evidence-Data-START## Transcript is intronless :: FJ873110.1, SRR5120059.471551.1 [ECO:0000345] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..954 /organism="Sus scrofa" /mol_type="mRNA" /db_xref="taxon:9823" /chromosome="X" /map="X" gene 1..954 /gene="CLDN2" /note="claudin 2" /db_xref="GeneID:733684" /db_xref="VGNC:VGNC:86737" exon 1..954 /gene="CLDN2" /inference="alignment:Splign:2.1.0" misc_feature 52..54 /gene="CLDN2" /note="upstream in-frame stop codon" CDS 136..828 /gene="CLDN2" /codon_start=1 /product="claudin-2" /protein_id="NP_001155110.1" /db_xref="GeneID:733684" /db_xref="VGNC:VGNC:86737" /translation="
MASLGLQLVGYILGLLGLLGTLVAMLLPSWRTSSYVGASIVTAVGFSKGLWMECATHSTGITQCDIYSTMLGLPADIQAAQAMMVTSSAISSLACIITVVGMRCTVFCQNSRAKDRVAVVGGVFFLLGGLLGFIPVAWNLHGILRDFYSPLVPDSMKFEIGEALYLGIISSLFSLIAGIILCFSCPLQGNRSNYYDAYQAQPLATRSSPRPGQPPKAKSEFNSYSLTGYV"
misc_feature 202..678 /gene="CLDN2" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" ORIGIN
ttgtaaggaggcgagaggtcggcctggcggagacactgtgcaatgagggattagaggccaggatccaaggagcaagtgctacagccgggagacgagggaacgggccctgaagacgcatctacggagaggtcggccatggcctctctcggcctccaacttgtaggctacatcctgggccttctggggctcttgggcaccctggttgccatgctgctccccagctggcgaacgagttcttacgtcggggccagcatcgtgacggcagtcggcttctccaagggcctctggatggagtgtgccacgcacagcactggcatcacccagtgtgacatctacagcaccatgctgggcctgcctgctgacatccaggctgcccaggccatgatggtgacatctagcgccatctcctcgttggcctgtatcatcaccgtggtgggcatgcggtgcaccgtcttctgccagaactctcgcgccaaagacagagtggcggtggtgggtggagtcttcttcctccttggaggcctcctgggcttcatccccgttgcgtggaatcttcatgggatcctgcgggacttctactcccccctggtgcctgacagcatgaaatttgagatcggagaggctctctacttgggcatcatttcctccctgttctccctgatagctgggatcatcctctgcttttcctgcccactgcaaggaaatcgctccaactactacgatgcctatcaggcccagcccctcgccacccggagctctccgaggcctggtcaaccacccaaagccaagagtgagtttaactcctacagcctgacagggtatgtgtgaagacccaggggccagcgctggcggttggggggggctgggtctgtgagagccagtggacagccttcccccagggccacaggtgagggacattgccactggattgcgccagaaggtgctgctgaggat
//
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@meso_cacase at
DBCLS
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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