2024-04-25 05:02:52, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001141626 1216 bp mRNA linear VRT 27-JUN-2020 DEFINITION Salmo salar homeobox protein HoxB9ab (hoxb9ab), mRNA. ACCESSION NM_001141626 VERSION NM_001141626.1 KEYWORDS RefSeq. SOURCE Salmo salar (Atlantic salmon) ORGANISM Salmo salar Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo. REFERENCE 1 (bases 1 to 1216) AUTHORS Mungpakdee S, Seo HC, Angotzi AR, Dong X, Akalin A and Chourrout D. TITLE Differential evolution of the 13 Atlantic salmon Hox clusters JOURNAL Mol. Biol. Evol. 25 (7), 1333-1343 (2008) PUBMED 18424774 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from EF695334.1. ##Evidence-Data-START## Transcript exon combination :: EF695334.1 [ECO:0000332] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..1216 /organism="Salmo salar" /mol_type="mRNA" /db_xref="taxon:8030" /chromosome="ssa06" /map="ssa06" gene 1..1216 /gene="hoxb9ab" /note="homeobox protein HoxB9ab" /db_xref="GeneID:100196597" misc_feature 81..83 /gene="hoxb9ab" /note="upstream in-frame stop codon" CDS 93..842 /gene="hoxb9ab" /codon_start=1 /product="homeobox protein HoxB9ab" /protein_id="NP_001135098.1" /db_xref="GeneID:100196597" /translation="
MSISGTLSNYYVDSIISHESEDPTSVRFSNVQYSNSRQPGGHGEHPEFPSCSFQPKPPVFSSSWSPFSPHASNGLPAVYHPYIPTQPVPSTDTRYIRTWLDCAPRSESLPGQGQVKMEPLLGHLGEPPKIGGHEYILESSSAREMNSSQGSGFEDNKDICEGTEDKEGPDQNDPSANWLHARSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARSLNLTERQVKIWFQNRRMKMKKMNKDQPKD"
misc_feature 93..605 /gene="hoxb9ab" /note="Hox9 activation region; Region: Hox9_act; pfam04617" /db_xref="CDD:428038" misc_feature order(645..659,663..665,714..716,732..734,771..773, 777..782,789..794,798..806,810..815) /gene="hoxb9ab" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 651..812 /gene="hoxb9ab" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(651..653,660..662,780..782,789..794,801..803) /gene="hoxb9ab" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" ORIGIN
ctttgttcgtaggctagtagaaggctagtaaaaaagacttctgtcctacatgttttcaattcaatgaaccgtgaattgtataatgtccgagaatgtccatttctggaactctgagcaactattatgtggactctataataagtcacgagagcgaagatccgacttcagtcaggttttccaatgtacagtattcgaactccaggcaaccggggggacatggcgagcatcccgaattcccctcttgtagcttccagcctaaacctccagtttttagctcgtcctggagcccgttcagcccccatgcctccaatggcttaccagcggtttaccatccatacatcccgactcagcccgtgccttccacggacacccgatacatacgcacttggctcgactgcgctccgcgctcggagtccctccccgggcaggggcaggtcaagatggagccgctactgggacacctcggggaaccccccaaaatcggtggacacgagtacattttggaatcctcttcggcaagagagatgaattccagccagggctccggattcgaggacaataaggatatctgtgaaggtaccgaagacaaagaagggccagatcaaaatgacccctctgccaactggttgcatgcccggtcttcccggaagaagcggtgcccttacacgaaataccaaaccctcgagctcgagaaagagttcctcttcaacatgtacctcacccgggacagaaggcacgaggtagcgcgctccctgaacttgaccgagagacaagtcaaaatatggttccaaaaccgacggatgaaaatgaagaaaatgaataaggatcaacccaaggattaagaaaaaaggggagtgctattaaaaacaccaccattacaaagagtctgctttctcgttacttttcccttaaataggcatacatggactgtaatgggtaaagtgggggtgcaggaagcttgtttttattattttccatatcgatgtgaaataccctctgacattatagaagcgcagaccaatagagaaaccccttatggtacattgtagctcagttggtatagcatggcgcttgtgacgccagggtagttggtttgtttcccgggatcacccgtacgtaaaatgtatgcacgcatgactgtaagtcgctatggataaaagcgtctgctaaatgccatatattatactatacagtagaaaggagggtggattcacgc
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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