2024-03-29 17:16:31, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001141621 806 bp mRNA linear VRT 27-JUN-2020 DEFINITION Salmo salar homeobox protein HoxC5ba (hoxc5ba), mRNA. ACCESSION NM_001141621 VERSION NM_001141621.1 KEYWORDS RefSeq. SOURCE Salmo salar (Atlantic salmon) ORGANISM Salmo salar Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo. REFERENCE 1 (bases 1 to 806) AUTHORS Mungpakdee S, Seo HC, Angotzi AR, Dong X, Akalin A and Chourrout D. TITLE Differential evolution of the 13 Atlantic salmon Hox clusters JOURNAL Mol. Biol. Evol. 25 (7), 1333-1343 (2008) PUBMED 18424774 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from EF695274.1. ##Evidence-Data-START## Transcript exon combination :: EF695274.1 [ECO:0000332] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..806 /organism="Salmo salar" /mol_type="mRNA" /db_xref="taxon:8030" /chromosome="ssa12" /map="ssa12" gene 1..806 /gene="hoxc5ba" /note="homeobox protein HoxC5ba" /db_xref="GeneID:100196592" CDS 1..750 /gene="hoxc5ba" /codon_start=1 /product="homeobox protein HoxC5ba" /protein_id="NP_001135093.1" /db_xref="GeneID:100196592" /translation="
MSSYVANSLFKQTHEASAFALHNHGYGSSPELNVSGYCGFGGHDHRGSFASPPSSSSRGMVEMNSGLHGNPGDLTPRPESSTGDASQRRHMNEQTSRQGSLNLGLYCRKPETDSDFSEMHICKTQTGEIKVVTLQPVQPVRQGNNSTQPQTSEPQPQIYPWMTKLHMGHDYFSLNYTPEADGKRSRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHTLCLNERQIKIWFQNRRMKWKKDSKLKIKESI"
misc_feature 403..>747 /gene="hoxc5ba" /note="Homeodomain-containing transcription factor [Transcription]; Region: COG5576" /db_xref="CDD:227863" misc_feature order(547..561,565..567,616..618,634..636,673..675, 679..684,691..696,700..708,712..717) /gene="hoxc5ba" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 553..714 /gene="hoxc5ba" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(553..555,562..564,682..684,691..696,703..705) /gene="hoxc5ba" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" exon 1..508 /gene="hoxc5ba" /inference="alignment:Splign:2.0.8" exon 509..806 /gene="hoxc5ba" /inference="alignment:Splign:2.0.8" ORIGIN
atgagctcttacgtagcaaactcattgtttaagcaaactcacgaggcgtcagccttcgctttgcacaaccatggatacggctctagccccgaactcaacgtgtccggctactgtggttttggagggcatgatcaccgggggtcattcgcgtccccaccgtcctcgagctcccgtggcatggtagagatgaactctgggctgcatggcaatcctggcgaccttacaccacgaccagagtcttccacaggagacgcttcccagagacgccacatgaacgagcagacaagccgccagggttctctaaatctcggactgtattgtcgcaaacccgagacggactcggatttcagcgaaatgcatatctgcaagactcaaacaggcgagatcaaagtcgtaactttgcaacccgtccagccagtaagacaaggaaacaattctactcagccacaaaccagcgaaccgcaaccacaaatatatccctggatgactaaactacacatgggtcacgattatttttctctcaattacactccagaggctgacggtaaaaggtcaaggacgagttacacgcgctaccaaactctggagttggagaaagagttccatttcaaccggtatctgacgcgtcgtaggcgcatcgagatcgcccatactctctgtctgaacgagaggcagatcaaaatctggttccagaaccgccgaatgaagtggaagaaggactcaaagcttaaaattaaagagtcaatctaaaacatggagccattttcaaacgttatcaacgttccttagagatgtcattcaaagac
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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