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2024-03-29 17:16:31, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_001141621             806 bp    mRNA    linear   VRT 27-JUN-2020
DEFINITION  Salmo salar homeobox protein HoxC5ba (hoxc5ba), mRNA.
ACCESSION   NM_001141621
VERSION     NM_001141621.1
KEYWORDS    RefSeq.
SOURCE      Salmo salar (Atlantic salmon)
  ORGANISM  Salmo salar
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii;
            Salmoniformes; Salmonidae; Salmoninae; Salmo.
REFERENCE   1  (bases 1 to 806)
  AUTHORS   Mungpakdee S, Seo HC, Angotzi AR, Dong X, Akalin A and Chourrout D.
  TITLE     Differential evolution of the 13 Atlantic salmon Hox clusters
  JOURNAL   Mol. Biol. Evol. 25 (7), 1333-1343 (2008)
   PUBMED   18424774
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from EF695274.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: EF695274.1 [ECO:0000332]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..806
                     /organism="Salmo salar"
                     /mol_type="mRNA"
                     /db_xref="taxon:8030"
                     /chromosome="ssa12"
                     /map="ssa12"
     gene            1..806
                     /gene="hoxc5ba"
                     /note="homeobox protein HoxC5ba"
                     /db_xref="GeneID:100196592"
     CDS             1..750
                     /gene="hoxc5ba"
                     /codon_start=1
                     /product="homeobox protein HoxC5ba"
                     /protein_id="NP_001135093.1"
                     /db_xref="GeneID:100196592"
                     /translation="
MSSYVANSLFKQTHEASAFALHNHGYGSSPELNVSGYCGFGGHDHRGSFASPPSSSSRGMVEMNSGLHGNPGDLTPRPESSTGDASQRRHMNEQTSRQGSLNLGLYCRKPETDSDFSEMHICKTQTGEIKVVTLQPVQPVRQGNNSTQPQTSEPQPQIYPWMTKLHMGHDYFSLNYTPEADGKRSRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHTLCLNERQIKIWFQNRRMKWKKDSKLKIKESI"
     misc_feature    403..>747
                     /gene="hoxc5ba"
                     /note="Homeodomain-containing transcription factor
                     [Transcription]; Region: COG5576"
                     /db_xref="CDD:227863"
     misc_feature    order(547..561,565..567,616..618,634..636,673..675,
                     679..684,691..696,700..708,712..717)
                     /gene="hoxc5ba"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    553..714
                     /gene="hoxc5ba"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     misc_feature    order(553..555,562..564,682..684,691..696,703..705)
                     /gene="hoxc5ba"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     exon            1..508
                     /gene="hoxc5ba"
                     /inference="alignment:Splign:2.0.8"
     exon            509..806
                     /gene="hoxc5ba"
                     /inference="alignment:Splign:2.0.8"
ORIGIN      
atgagctcttacgtagcaaactcattgtttaagcaaactcacgaggcgtcagccttcgctttgcacaaccatggatacggctctagccccgaactcaacgtgtccggctactgtggttttggagggcatgatcaccgggggtcattcgcgtccccaccgtcctcgagctcccgtggcatggtagagatgaactctgggctgcatggcaatcctggcgaccttacaccacgaccagagtcttccacaggagacgcttcccagagacgccacatgaacgagcagacaagccgccagggttctctaaatctcggactgtattgtcgcaaacccgagacggactcggatttcagcgaaatgcatatctgcaagactcaaacaggcgagatcaaagtcgtaactttgcaacccgtccagccagtaagacaaggaaacaattctactcagccacaaaccagcgaaccgcaaccacaaatatatccctggatgactaaactacacatgggtcacgattatttttctctcaattacactccagaggctgacggtaaaaggtcaaggacgagttacacgcgctaccaaactctggagttggagaaagagttccatttcaaccggtatctgacgcgtcgtaggcgcatcgagatcgcccatactctctgtctgaacgagaggcagatcaaaatctggttccagaaccgccgaatgaagtggaagaaggactcaaagcttaaaattaaagagtcaatctaaaacatggagccattttcaaacgttatcaacgttccttagagatgtcattcaaagac
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]