2024-03-29 08:46:04, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001140670 1115 bp mRNA linear VRT 28-JUN-2020 DEFINITION Salmo salar distal-less homeobox 5a (dlx5a), mRNA. ACCESSION NM_001140670 VERSION NM_001140670.1 KEYWORDS RefSeq. SOURCE Salmo salar (Atlantic salmon) ORGANISM Salmo salar Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo. REFERENCE 1 (bases 1 to 1115) AUTHORS Leong JS, Jantzen SG, von Schalburg KR, Cooper GA, Messmer AM, Liao NY, Munro S, Moore R, Holt RA, Jones SJ, Davidson WS and Koop BF. TITLE Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome JOURNAL BMC Genomics 11, 279 (2010) PUBMED 20433749 REMARK Publication Status: Online-Only COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BT046548.1. ##Evidence-Data-START## Transcript exon combination :: BT046548.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00779696, SAMN02863984 [ECO:0000348] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..1115 /organism="Salmo salar" /mol_type="mRNA" /db_xref="taxon:8030" /chromosome="ssa27" /map="ssa27" gene 1..1115 /gene="dlx5a" /gene_synonym="dlx5" /note="distal-less homeobox 5a" /db_xref="GeneID:100195641" exon 1..458 /gene="dlx5a" /gene_synonym="dlx5" /inference="alignment:Splign:2.0.8" CDS 95..955 /gene="dlx5a" /gene_synonym="dlx5" /note="distal-less homeobox gene 5a; distal-less homeobox 5" /codon_start=1 /product="homeobox protein Dlx5a" /protein_id="NP_001134142.1" /db_xref="GeneID:100195641" /translation="
MTGVFDRRIPSIKPADFQNPFQLSTTMHHPSQESPTLPESTATDSGYYSPAGAVHHGYCSPNSTSYGKPINAYQYQYHGVNGSAGNYPAKTYPDYSAYTASAYHQYAGTYSRVQPQPLSPQEKEVAEPEVRMVNGKPKKIRKPRTIYSSFQLAALQRRFQNTQYLALPERAELAASLGLTQTQVKIWFQNKRSKLKKIMKNGELPPEHSPSSSDPMACNSPHSPAVWDTQGPSRPHSHQAQNNNSAASTFLENSASWYSAAGAMNSHLQAPNSIQHSLVLGSGTLY"
misc_feature 188..454 /gene="dlx5a" /gene_synonym="dlx5" /note="Homeobox protein distal-less-like N terminal; Region: DLL_N; pfam12413" /db_xref="CDD:432536" misc_feature order(515..529,533..535,584..586,602..604,641..643, 647..652,659..664,668..676,680..685) /gene="dlx5a" /gene_synonym="dlx5" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 521..682 /gene="dlx5a" /gene_synonym="dlx5" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(521..523,530..532,650..652,659..664,671..673) /gene="dlx5a" /gene_synonym="dlx5" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" exon 459..643 /gene="dlx5a" /gene_synonym="dlx5" /inference="alignment:Splign:2.0.8" exon 644..1115 /gene="dlx5a" /gene_synonym="dlx5" /inference="alignment:Splign:2.0.8" ORIGIN
aaagcacacatcacacaatgcaagtgtagtcttcactcagtcttcagacgtctcagtggaaacagacttccctttaacgttgctgcttcgaactatgactggagtattcgaccgaaggattccgagtatcaaacctgccgacttccagaacccttttcagctttccaccaccatgcatcacccgtctcaggaatctcctactctacccgagtctacggccacggattctggctactacagccctgctggagcagtgcaccatggctattgttcgcctaactccacctcgtatgggaaaccgatcaatgcctatcagtaccagtaccacggcgtaaacggatctgcgggaaattaccctgcaaaaacatacccagactacagcgcatacacagcctctgcttaccaccaatatgctggaacttatagcagagtacaaccacaaccattaagtccgcaagaaaaagaggtagcagaacctgaagtgaggatggtaaacggaaagcccaagaaaatcagaaagccaagaacaatctactccagttttcagctcgccgccctgcagcggagatttcagaacacacagtacctcgcgctgccggagagagcagagctcgcggcttcgttgggactcacgcaaacgcaggtcaaaatatggttccagaacaaaaggtcgaaactgaagaaaatcatgaagaacggcgaactcccaccggaacacagcccgagctccagcgatcccatggcttgcaactctcctcattcacccgccgtctgggacacgcagggcccgtccaggcctcacagccaccaggcacagaacaacaactcggcggcatccacctttttggaaaactccgcctcttggtactccgcggctggtgccatgaattctcacctccaggcccccaactcgatacagcactctttggttctcggatcggggacgttatactgaaacccagttcaacaaatatttcattgtatgggactcgtgtttaaaagattcagaggaatatgcaatgtattgatgacagtcatagaagaacgtgtataatgtgtaaatgtgtgcatgtaatttattgcattttggaagactaattaaacgttttaaatgg
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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