2024-04-24 00:26:52, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001081572 906 bp mRNA linear PRI 21-JUN-2021 DEFINITION Pan troglodytes homeobox B1 (HOXB1), mRNA. ACCESSION NM_001081572 XM_001173083 VERSION NM_001081572.1 KEYWORDS RefSeq. SOURCE Pan troglodytes (chimpanzee) ORGANISM Pan troglodytes Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan. COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from DQ977336.1. On Feb 17, 2007 this sequence version replaced XM_001173083.1. ##Evidence-Data-START## RNAseq introns :: single sample supports all introns SAMN02189945, SAMN02189948 [ECO:0000348] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..906 /organism="Pan troglodytes" /mol_type="mRNA" /db_xref="taxon:9598" /chromosome="17" /map="17" gene 1..906 /gene="HOXB1" /note="homeobox B1" /db_xref="GeneID:749225" /db_xref="VGNC:VGNC:9324" CDS 1..906 /gene="HOXB1" /note="homeo box B1" /codon_start=1 /product="homeobox protein Hox-B1" /protein_id="NP_001075041.1" /db_xref="GeneID:749225" /db_xref="VGNC:VGNC:9324" /translation="
MDYNRMNSFLEYPLCNRGSSAYSAHSAPTSFPPSSAQAVDSYASEGRYGGGLSSPAFQQNSGYPAQQPPSTLGVPFPSSAPSGYAPAACSPSYGPSQYYPLGQSEGDGGYFHPSSYGAQLGGLSDGYGAGGAGPGPYPPQHPPYGNEQTASFAPAYADLLSEDKETPCPSEPNTPTARTFDWMKVKRNPPKTAKVSEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKREREGGRVPPAPPGCPKEAAGDASDQSTCTSPEASPSSVTS"
misc_feature 55..231 /gene="HOXB1" /note="propagated from UniProtKB/Swiss-Prot (A2T6Z0.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 379..447 /gene="HOXB1" /note="propagated from UniProtKB/Swiss-Prot (A2T6Z0.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 535..552 /gene="HOXB1" /note="propagated from UniProtKB/Swiss-Prot (A2T6Z0.1); Region: Antp-type hexapeptide" misc_feature order(619..624,628..630,679..681,697..699,736..738, 742..747,754..759,763..771,775..780) /gene="HOXB1" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 619..777 /gene="HOXB1" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(625..627,745..747,754..759,766..768) /gene="HOXB1" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 763..903 /gene="HOXB1" /note="propagated from UniProtKB/Swiss-Prot (A2T6Z0.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" exon 1..577 /gene="HOXB1" /inference="alignment:Splign:2.1.0" exon 578..906 /gene="HOXB1" /inference="alignment:Splign:2.1.0" ORIGIN
atggactataataggatgaattccttcttagagtacccactctgtaaccggggatccagcgcctacagcgcccacagcgccccaacctcttttcccccaagctcggctcaggcggttgacagctatgcaagcgagggccgctacggtggggggctgtccagccctgcgtttcagcagaactccggctatcccgcccagcagccgccttcgaccctgggggtgcccttccccagctccgcgccctcggggtatgctcctgccgcctgcagccccagctacgggccttctcagtactaccctctgggtcaatcagaaggagacggaggctattttcatccctcgagctacggggcccagctagggggcttgtccgatggctacggagcaggtggagccggtccggggccatatcctccgcagcatcccccttatgggaacgagcagaccgcgagctttgcaccggcctatgctgatctcctctccgaggacaaggaaacaccctgcccttcagaacctaacacccccacggcccggaccttcgactggatgaaggttaagagaaacccacccaagacagcgaaggtgtcagagccaggcctgggctcgcccagtggcctccgcaccaacttcaccacaaggcagctgacagaactggaaaaggagttccatttcaacaagtacctgagccgggcccggagggtggagattgccgccaccctggagctcaatgaaacacaggtcaagatttggttccagaaccgacgaatgaagcagaagaaacgcgagcgagagggaggtcgggtccccccagccccaccaggctgccccaaggaggcagctggagatgcctcagaccagtcgacatgcacctccccggaagcctcacccagctctgtcacctcctga
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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