LOCUS       NM_001045789            1456 bp    mRNA    linear   VRT 22-DEC-2019
DEFINITION  Xenopus tropicalis GS homeobox 1 (gsx1), mRNA.
ACCESSION   NM_001045789
VERSION     NM_001045789.1
KEYWORDS    RefSeq.
SOURCE      Xenopus tropicalis (tropical clawed frog)
  ORGANISM  Xenopus tropicalis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae;
            Xenopus; Silurana.
REFERENCE   1  (bases 1 to 1456)
  AUTHORS   Illes JC, Winterbottom E and Isaacs HV.
  TITLE     Cloning and expression analysis of the anterior parahox genes, Gsh1
            and Gsh2 from Xenopus tropicalis
  JOURNAL   Dev. Dyn. 238 (1), 194-203 (2009)
   PUBMED   19097192
  REMARK    GeneRIF: Results show that Gsh1 and Gsh2 exhibit complex,
            overlapping patterns of expression within the anterior nervous
            system from open neural plate stages.
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from DQ195530.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: DQ195530.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00862018 [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1456
                     /organism="Xenopus tropicalis"
                     /mol_type="mRNA"
                     /db_xref="taxon:8364"
                     /chromosome="2"
                     /map="2"
     gene            1..1456
                     /gene="gsx1"
                     /gene_synonym="gsh-1; gsh1; Xgsh1"
                     /note="GS homeobox 1"
                     /db_xref="GeneID:734120"
                     /db_xref="Xenbase:XB-GENE-855502"
     CDS             142..873
                     /gene="gsx1"
                     /gene_synonym="gsh-1; gsh1; Xgsh1"
                     /note="genomic-screened homeobox 1"
                     /codon_start=1
                     /product="GS homeobox 1"
                     /protein_id="NP_001039254.1"
                     /db_xref="GeneID:734120"
                     /db_xref="Xenbase:XB-GENE-855502"
                     /translation="

MPRSFLVDSLILRETNEKKVESSPPLFPYAVHPTHPLHGLPAGSCHSRKSGLLCVCPMCVTASHLHPPPPGIPLLKASFSSFGTQYCPAGLGRQHSASTGINVSHGPALYQAAYPLPDPRQFHCISVDSSPSQLSSSKRMRTAFTSTQLLELEREFASNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKEGKSSTHRASPHGCKCSSLSSKCLEEDDEDLAMSPSSSGKDDRDLSPSP"

     misc_feature    550..729
                     /gene="gsx1"
                     /gene_synonym="gsh-1; gsh1; Xgsh1"
                     /note="Region: homeobox"
     misc_feature    order(553..567,571..573,622..624,640..642,679..681,
                     685..690,697..702,706..714,718..723)
                     /gene="gsx1"
                     /gene_synonym="gsh-1; gsh1; Xgsh1"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(559..561,568..570,688..690,697..702,709..711)
                     /gene="gsx1"
                     /gene_synonym="gsh-1; gsh1; Xgsh1"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    562..720
                     /gene="gsx1"
                     /gene_synonym="gsh-1; gsh1; Xgsh1"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
ORIGIN      

caccctgcctctcacgtcgctccagcctggaggcgcttccctctactctctgcctgcctgcctgcctgcctgtaccctgctctgcctgcctgccacctactcccctgcaccccacaccgtaccccccaaagcctggcactcatgcctcgatccttcctagtggattcccttatcctaagggagacaaacgagaagaaggtagagagcagcccccctctgttcccctatgcagtgcaccccactcacccactgcacggattgccagccgggtcctgccactctcgcaaatccggactcctctgtgtctgcccaatgtgtgtcactgcctcccacctacacccacctccacctggcatccccctgctcaaagcttcattctcttcctttggcacccagtactgtccggcaggtctgggcaggcagcactcagcctctactggcatcaacgttagccatgggccagctctgtaccaggcagcctacccactgcccgaccccaggcagttccactgcatctctgtcgacagctctcccagccaactgagcagcagtaagaggatgcgcacagccttcaccagcacccaactcctggaactggagcgggaattcgcctccaacatgtacctgtcgcgactcaggcgcattgaaatcgccacctacctgaacctgtcggagaaacaggtgaagatctggttccaaaacaggagagtgaagcacaagaaggaaggcaagagcagcacccacagggccagtccccacggctgcaagtgctcgtccctatccagcaagtgcctggaggaggatgatgaggatctggctatgtctcccagctcctcagggaaggatgacagggacctctccccaagtccctaacccacaggactagaaggaaaaaactctcagacaattagcactgccaatgtaaatgtgtataatggcctttgtacatagtgggataaataactaaataccaaacagccaatggacaagcactgacccatcagcacatgatacagacatttccatgtcaccagctaatctccctgagcaagaagggttcttatcattactagcagggaacccaccctactctgctacagcaaaactgcatttggtttgggggagattcggccttcttctgaactacatctcccatcatgcactgacagccttcattagcctttccttctcagaaggttctgggaattgtaatgaggcagacactgggctgtggggttctgaggatagaacaacatctgttaatgaatgtacagaattttgcaacaatatagaaatattgtaagattcttgagaatataaatttcgttggggaagggtgggggtatgatctttgtatcgtttgtcaatatcagaaagaaaaatatatttatttatttatgtaaaaatggaaacataataataaaattcttttttttctaaaaaaaaaaaaaaaaaa

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