2024-04-24 07:43:18, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001030395 1854 bp mRNA linear VRT 22-DEC-2019 DEFINITION Xenopus tropicalis distal-less homeobox 3 (dlx3), mRNA. ACCESSION NM_001030395 VERSION NM_001030395.1 KEYWORDS RefSeq. SOURCE Xenopus tropicalis (tropical clawed frog) ORGANISM Xenopus tropicalis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana. REFERENCE 1 (bases 1 to 1854) AUTHORS Klein SL, Strausberg RL, Wagner L, Pontius J, Clifton SW and Richardson P. TITLE Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative JOURNAL Dev. Dyn. 225 (4), 384-391 (2002) PUBMED 12454917 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC090605.1. ##Evidence-Data-START## Transcript exon combination :: BC090605.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMD00028296, SAMN00861986 [ECO:0000348] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..1854 /organism="Xenopus tropicalis" /mol_type="mRNA" /db_xref="taxon:8364" /chromosome="10" /map="10" gene 1..1854 /gene="dlx3" /gene_synonym="ai4; dlx3-a; dlx3-b; tdo; Xdll-2; xdlx3" /note="distal-less homeobox 3" /db_xref="GeneID:594954" /db_xref="Xenbase:XB-GENE-5879293" misc_feature 4..6 /gene="dlx3" /gene_synonym="ai4; dlx3-a; dlx3-b; tdo; Xdll-2; xdlx3" /note="upstream in-frame stop codon" CDS 46..876 /gene="dlx3" /gene_synonym="ai4; dlx3-a; dlx3-b; tdo; Xdll-2; xdlx3" /note="distal-less homeo box 3" /codon_start=1 /product="homeobox protein DLX-3" /protein_id="NP_001025566.1" /db_xref="GeneID:594954" /db_xref="Xenbase:XB-GENE-5879293" /translation="
MSGSYEKKMAVLTDLTTSCHPVTKDSPTLPESTATDMGYYSGHLSGGQHDFFQTQAYSPSISSYGYHHPHHQYNFNGLVGNESFLPKDDYQYGGGYRAFGHYREPPVPETVSVKEEPETEVRMVNGKPKKIRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVKIWFQNRRSKFKKLYKTGEGPGLEHSPNNSDSMACNSPSSPPVWDNSRSRTPQQQQQQSLPPCSSPSYMENYHPWYTQQTQPGQHLQPSEVMHQPPSNTVY"
misc_feature 115..375 /gene="dlx3" /gene_synonym="ai4; dlx3-a; dlx3-b; tdo; Xdll-2; xdlx3" /note="Homeobox protein distal-less-like N terminal; Region: DLL_N; pfam12413" /db_xref="CDD:432536" misc_feature 370..726 /gene="dlx3" /gene_synonym="ai4; dlx3-a; dlx3-b; tdo; Xdll-2; xdlx3" /note="Homeodomain-containing transcription factor [Transcription]; Region: COG5576" /db_xref="CDD:227863" misc_feature order(439..453,457..459,508..510,526..528,565..567, 571..576,583..588,592..600,604..609) /gene="dlx3" /gene_synonym="ai4; dlx3-a; dlx3-b; tdo; Xdll-2; xdlx3" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 445..606 /gene="dlx3" /gene_synonym="ai4; dlx3-a; dlx3-b; tdo; Xdll-2; xdlx3" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(445..447,454..456,574..576,583..588,595..597) /gene="dlx3" /gene_synonym="ai4; dlx3-a; dlx3-b; tdo; Xdll-2; xdlx3" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" ORIGIN
gtctgattaatttccagggagctctcttctccggctctacaaaccatgagcgggtcctatgaaaagaagatggcagtgttgaccgacctgaccacttcttgtcatcctgtgaccaaggactctcccaccctgccagagtcaaccgccacggatatgggctattatagcggtcacctctctggtgggcagcacgacttcttccagactcaagcgtactccccatctatcagcagctatggctaccaccacccccaccatcagtacaactttaatgggctagtagggaacgagagctttctgcccaaggatgactatcagtatggagggggatatcgggcgtttgggcattacagagagcctccagtgccggagacagtttcagtgaaggaagagccagaaaccgaagttcggatggttaatgggaaacctaaaaagatccgaaagccaagaaccatctattctagttaccagctggctgcattgcagagaaggttccagaaggcccaatatttggcactgcccgagagagcagaactagccgcccagttagggctcactcaaacgcaggtaaaaatttggttccagaaccgaagatctaagtttaaaaaactgtacaaaaccggagaagggcctggtttggaacacagtccgaataacagcgactccatggcttgcaattccccttcatccccacccgtatgggacaatagtcgaagccgaacccctcagcagcagcagcagcaaagtcttccaccgtgctcttcaccctcttatatggagaactaccatccgtggtacacccagcaaacccaacctggccagcacctacaaccatctgaagttatgcatcaacctccttccaatacagtgtattaagtgaaaaaagacactggcactaatttatctttgtgccctcctgtattttatttttattttttttggaatttgatgacagtcaaaaagtttgaaaaacaatgtcagctcaaggtcaaaccgataattaggtgcattttatacacagcacctaaagaattgcttgatccctcaggctgagtggtttggatggacaatattttggagattatccattattttggatgccactatacgtcagtctttctcgaaccttggattctcgaaccttgtgttgggcctcttaatttatcattaatgaaagtgacattaatgtaatgttctaaagtatagattctcattcttttatgcctctcctgacaaccatggtttaaatactgcaatagctgaattaaaactctaaaggtgttatttttaagaccctttcctggacttgttgctgtttgaccaatgtgatattctgtgccttagtaaatgaagctatatttaaataatagatccatttttacgttttataagggacaagaagcaaaatattccataactctactgaatcgagatacaaagacttgtagagttgattctgcctgggactgtaagatgtggctgcatctcagtggcctcaccagcttccataaaggaacatcgaatggtcaaagggtcccgaattcagtgtcactccatggtggaacggacttctttccagagctgctgtttgtgtaacttggtcacgttcctgtgtcatggaaatatttaaaacaaaaacaaaacaaaaaaaagactatggttggccttaacttatttttgtaatatttttggggggttgtgtttggaatgggaggagaagatgatgagaactaactttgattagaagatgggggggggggggggtgttaaagaatgttatggtgtgaatgcaaataaatttttatggtattttgctggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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