2024-03-29 08:56:12, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001017256 896 bp mRNA linear VRT 22-DEC-2019 DEFINITION Xenopus tropicalis homeobox C9 (hoxc9), mRNA. ACCESSION NM_001017256 VERSION NM_001017256.2 KEYWORDS RefSeq. SOURCE Xenopus tropicalis (tropical clawed frog) ORGANISM Xenopus tropicalis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana. REFERENCE 1 (bases 1 to 896) AUTHORS Klein SL, Strausberg RL, Wagner L, Pontius J, Clifton SW and Richardson P. TITLE Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative JOURNAL Dev. Dyn. 225 (4), 384-391 (2002) PUBMED 12454917 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CR760047.2. On Oct 14, 2005 this sequence version replaced NM_001017256.1. ##Evidence-Data-START## Transcript exon combination :: CR760047.2, AL636440.2 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMD00028291, SAMD00028292 [ECO:0000348] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..896 /organism="Xenopus tropicalis" /mol_type="mRNA" /db_xref="taxon:8364" gene 1..896 /gene="hoxc9" /gene_synonym="hox3; hox3b; Xhoxc9; XlHbox6" /note="homeobox C9" /db_xref="GeneID:550010" /db_xref="Xenbase:XB-GENE-482330" misc_feature 83..85 /gene="hoxc9" /gene_synonym="hox3; hox3b; Xhoxc9; XlHbox6" /note="upstream in-frame stop codon" CDS 95..397 /gene="hoxc9" /gene_synonym="hox3; hox3b; Xhoxc9; XlHbox6" /codon_start=1 /product="homeobox C9" /protein_id="NP_001017256.1" /db_xref="GeneID:550010" /db_xref="Xenbase:XB-GENE-482330" /translation="
MGEFLAPHGGKEGHLQLQKDNPVANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRMKMKKMNKEKPDKEQS"
misc_feature 197..337 /gene="hoxc9" /gene_synonym="hox3; hox3b; Xhoxc9; XlHbox6" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" ORIGIN
cttggatacacactacttttggctttggcttttctgttttaagagaaataagcagtgcatgtgccaaggagcagccaggcactgacaaaggaatatgggcgaattcctagcaccacatggagggaaggaaggacatctccagctgcagaaagataaccctgtagcgaattggatccacgctcgttctacgaggaagaaacgctgcccatataccaagtatcagactttggaactcgaaaaggaatttttatttaacatgtatctaaccagggaccggcggtatgaagtggcaagggtgttaaatctcactgagcgccaagttaaaatctggtttcagaacagaagaatgaaaatgaagaagatgaacaaggagaaacccgataaggagcagtcgtaaaagactaacacaaatactaatatgtataacctcaatatgacaaatatgtgaagaaaacattttggctcaatacatagctaaaaagagagaaaataaaaaaactttcctgactatgaatgtggagatcagtgtttagaatagataaacacaggcgcatttttggaagcacaggcttttataaaatgcaattaaaaatgtttccttccctgtctttaaaactaagaaagtacttgaatattttttttttttttttagaattttattttgtaacttatacttatccagtgttaatttttattttaagagtttgtcagtgcatattttgtataaaacaaatcggaatacaatatgttttgttatagtctctgaaagtccgttggattgtacatatttgtgtattttattcttgtcacagaaatcctttctgtattgttatgttatgcttgtagaacagctctctgtaaatatagaaaagaacactaaaaaaaaaaaaaaaaaa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]