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2020-04-06 11:21:22, GGRNA : RefSeq release 99 (Mar, 2020)

Summary:

Results:

Matches are highlighted with green background. Overlapping matches are dark colored.

Xenopus tropicalis argonaute 2, RISC catalytic component (ago2), mRNA. (3687 bp)
single sample supports all introns SAMD00028290, SAMD00028291 [ECO:0000348] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..3687 /organism="Xenopus tropicalis" /mol_type="mRNA" /db_xref="taxon:8364" /chromosome="6" /map="6" gene 1..3687 /gene="ago2" /gene_synonym="Argonaute2; eif2c2" /note="argonaute 2, RISC catalytic component" /db_xref="GeneID:448205" /db_xref="Xenbase:XB-GENE-1001916" exon 1..260 /gene="ago2" /gene_synonym="Argonaute2; eif2c2" /inference="alignment:Splign:2.1.0" misc_feature 122..124 /gene="ago2" /gene_synonym="Argonaute2; eif2c2" /note="upstream in-frame stop...
Synonym: Argonaute2; eif2c2
NM_001004877.1 - Xenopus tropicalis (tropical clawed frog) - NCBI
Xenopus laevis argonaute 2, RISC catalytic component L homeolog (ago2.L), mRNA. (3298 bp)
mixed/partial sample support SAMD00012418, SAMD00012419 [ECO:0000350] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..3298 /organism="Xenopus laevis" /mol_type="mRNA" /db_xref="taxon:8355" /chromosome="6L" gene 1..3298 /gene="ago2.L" /gene_synonym="ago2; ago2.S; Argonaute2; eif2c1; eif2c2" /note="argonaute 2, RISC catalytic component L homeolog" /db_xref="GeneID:446823" /db_xref="Xenbase:XB-GENE-1001922" misc_feature 140..142 /gene="ago2.L" /gene_synonym="ago2; ago2.S; Argonaute2; eif2c1; eif2c2" /note="upstream in-frame stop codon" CDS 263..2851 /gene="ago2.L" /gene_synonym="...
Synonym: ago2; ago2.S; Argonaute2; eif2c1; eif2c2
NM_001093519.1 - Xenopus laevis (African clawed frog) - NCBI
Danio rerio argonaute RISC catalytic component 3b (ago3b), mRNA. (3062 bp)
c 2954-3062 BX005424.10 157442-157550 c FEATURES Location/Qualifiers source 1..3062 /organism="Danio rerio" /mol_type="mRNA" /strain="Tuebingen" /db_xref="taxon:7955" /chromosome="19" /map="19" gene 1..3062 /gene="ago3b" /gene_synonym="ago3; Argonaute3; eif2c3; eif2c3b; sb:eu332; si:dkey-3n22.3" /note="argonaute RISC catalytic component 3b" /db_xref="GeneID:568159" /db_xref="ZFIN:ZDB-GENE-060503-452" exon 1..498 /gene="ago3b" /gene_synonym="ago3; Argonaute3; eif2c3; eif2c3b; sb:eu332; si:dkey-3n22.3" /inference="alignment:Splign:2.1.0" misc_feature 477..479 /gene="ago3b" /gene_synonym="ago3;...
Synonym: ago3; Argonaute3; eif2c3; eif2c3b; sb:eu332; si:dkey-3n22.3
NM_001160028.1 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Xenopus tropicalis argonaute 2, RISC catalytic component (ago2), transcript variant X1, mRNA. (5660 bp)
END## FEATURES Location/Qualifiers source 1..5660 /organism="Xenopus tropicalis" /mol_type="mRNA" /strain="Nigerian" /db_xref="taxon:8364" /chromosome="6" /sex="female" /tissue_type="liver and blood" /dev_stage="adult" /note="F17 inbred" gene 1..5660 /gene="ago2" /gene_synonym="Argonaute2; eif2c2" /note="argonaute 2, RISC catalytic component; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 68 ESTs, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 102 samples with...
Synonym: Argonaute2; eif2c2
XM_012964517.3 - Xenopus tropicalis (tropical clawed frog) - NCBI
Xenopus laevis argonaute 4, RISC catalytic component L homeolog (ago4.L), mRNA. (4129 bp)
RNAseq introns :: mixed/partial sample support SAMN02777034, SAMN02851412 [ECO:0000350] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..4129 /organism="Xenopus laevis" /mol_type="mRNA" /db_xref="taxon:8355" /chromosome="2L" gene 1..4129 /gene="ago4.L" /gene_synonym="ago4; argonaute-4; Argonaute4; eif2c4" /note="argonaute 4, RISC catalytic component L homeolog" /db_xref="GeneID:734630" /db_xref="Xenbase:XB-GENE-1006885" CDS 21..2675 /gene="ago4.L" /gene_synonym="ago4; argonaute-4; Argonaute4; eif2c4" /note="argonaute4; eukaryotic translation initiation factor 2C 4; argonaute RISC...
Synonym: ago4; argonaute-4; Argonaute4; eif2c4
NM_001096105.1 - Xenopus laevis (African clawed frog) - NCBI
Sus scrofa argonaute RISC catalytic component 2 (AGO2), mRNA. (2583 bp)
misc_feature 76..2577 /gene="AGO2" /gene_synonym="EIF2C2" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 85..501 /gene="AGO2" /gene_synonym="EIF2C2" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:293095" misc_feature 532..681 /gene="AGO2" /gene_synonym="EIF2C2" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:285861" misc_feature 682..1044 /gene="AGO2" /gene_synonym="EIF2C2" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an...
Synonym: EIF2C2
NM_001194975.1 - Sus scrofa (pig) - NCBI
PREDICTED: Coturnix japonica argonaute RISC catalytic component 2 (AGO2), mRNA. (13291 bp)
misc_feature 272..2773 /gene="AGO2" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 281..697 /gene="AGO2" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:293095" misc_feature 728..877 /gene="AGO2" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:285861" misc_feature 878..1240 /gene="AGO2" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been...
XM_015856389.1 - Coturnix japonica (Japanese quail) - NCBI
PREDICTED: Sarcophilus harrisii argonaute RISC catalytic component 2 (AGO2), transcript variant X2, mRNA. (3401 bp)
misc_feature 499..3027 /gene="AGO2" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 535..951 /gene="AGO2" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:293095" misc_feature 982..1131 /gene="AGO2" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:285861" misc_feature 1132..1494 /gene="AGO2" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has...
XM_012541850.3 - Sarcophilus harrisii (Tasmanian devil) - NCBI
PREDICTED: Apis dorsata protein argonaute-2 (LOC102672589), mRNA. (3700 bp)
misc_feature 140..490 /gene="LOC102672589" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:293095" misc_feature 143..2590 /gene="LOC102672589" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 521..670 /gene="LOC102672589" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:285861" misc_feature 671..1033 /gene="LOC102672589" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference...
XM_006622049.2 - Apis dorsata (giant honeybee) - NCBI
PREDICTED: Clupea harengus protein argonaute-4 (LOC105909045), transcript variant X6, mRNA. (2817 bp)
misc_feature 178..2811 /gene="LOC105909045" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 235..648 /gene="LOC105909045" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:293095" misc_feature 682..831 /gene="LOC105909045" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:285861" misc_feature 832..1194 /gene="LOC105909045" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference...
XM_012837619.2 - Clupea harengus (Atlantic herring) - NCBI
PREDICTED: Clupea harengus protein argonaute-4 (LOC105909045), transcript variant X7, mRNA. (2814 bp)
misc_feature 238..2808 /gene="LOC105909045" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 247..660 /gene="LOC105909045" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:293095" misc_feature 694..843 /gene="LOC105909045" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:285861" misc_feature 844..1206 /gene="LOC105909045" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference...
XM_012837621.2 - Clupea harengus (Atlantic herring) - NCBI
PREDICTED: Clupea harengus protein argonaute-4 (LOC105909045), transcript variant X4, mRNA. (2829 bp)
misc_feature 238..2823 /gene="LOC105909045" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 247..660 /gene="LOC105909045" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:293095" misc_feature 694..843 /gene="LOC105909045" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:285861" misc_feature 844..1206 /gene="LOC105909045" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference...
XM_012837618.2 - Clupea harengus (Atlantic herring) - NCBI
PREDICTED: Vicugna pacos argonaute RISC component 4 (AGO4), transcript variant X1, mRNA. (11036 bp)
misc_feature 4778..7315 /gene="AGO4" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 4787..5200 /gene="AGO4" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:293095" misc_feature 5234..5383 /gene="AGO4" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:285861" misc_feature 5384..5746 /gene="AGO4" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain...
XM_006212692.3 - Vicugna pacos (alpaca) - NCBI
PREDICTED: Clupea harengus protein argonaute-4 (LOC105909045), transcript variant X3, mRNA. (2838 bp)
misc_feature 238..2832 /gene="LOC105909045" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 247..660 /gene="LOC105909045" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:293095" misc_feature 694..843 /gene="LOC105909045" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:285861" misc_feature 844..1230 /gene="LOC105909045" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference...
XM_012837617.2 - Clupea harengus (Atlantic herring) - NCBI
PREDICTED: Clupea harengus protein argonaute-4 (LOC105909045), transcript variant X2, mRNA. (2841 bp)
misc_feature 178..2835 /gene="LOC105909045" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 235..648 /gene="LOC105909045" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:293095" misc_feature 682..831 /gene="LOC105909045" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:285861" misc_feature 832..1218 /gene="LOC105909045" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference...
XM_012837616.2 - Clupea harengus (Atlantic herring) - NCBI
PREDICTED: Clupea harengus protein argonaute-4 (LOC105909045), transcript variant X1, mRNA. (6904 bp)
misc_feature 238..2847 /gene="LOC105909045" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 247..660 /gene="LOC105909045" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:293095" misc_feature 694..843 /gene="LOC105909045" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:285861" misc_feature 844..1230 /gene="LOC105909045" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference...
XM_012837615.2 - Clupea harengus (Atlantic herring) - NCBI
PREDICTED: Clupea harengus argonaute RISC catalytic component 3 (LOC105902039), transcript variant X3, mRNA. (8558 bp)
misc_feature 677..3196 /gene="LOC105902039" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 677..1120 /gene="LOC105902039" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:293095" misc_feature 1151..1300 /gene="LOC105902039" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:285861" misc_feature 1301..1663 /gene="LOC105902039" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA...
XM_012829562.2 - Clupea harengus (Atlantic herring) - NCBI
PREDICTED: Clupea harengus argonaute RISC catalytic component 3 (LOC105902039), transcript variant X1, mRNA. (8579 bp)
misc_feature 677..3217 /gene="LOC105902039" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 677..1120 /gene="LOC105902039" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:293095" misc_feature 1151..1300 /gene="LOC105902039" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:285861" misc_feature 1301..1663 /gene="LOC105902039" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA...
XM_012829561.2 - Clupea harengus (Atlantic herring) - NCBI
PREDICTED: Apis florea protein argonaute-2 (LOC100870792), transcript variant X3, mRNA. (3922 bp)
misc_feature 259..2826 /gene="LOC100870792" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 313..726 /gene="LOC100870792" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:293095" misc_feature 757..906 /gene="LOC100870792" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:285861" misc_feature 907..1269 /gene="LOC100870792" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference...
XM_012488465.2 - Apis florea (little honeybee) - NCBI
PREDICTED: Papio anubis argonaute RISC component 1 (AGO1), transcript variant X4, mRNA. (2767 bp)
misc_feature 337..729 /gene="AGO1" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:318646" misc_feature 757..909 /gene="AGO1" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:312283" misc_feature 910..1272 /gene="AGO1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212"...
XM_021939352.2 - Papio anubis (olive baboon) - NCBI
PREDICTED: Vicugna pacos argonaute RISC component 1 (AGO1), transcript variant X3, mRNA. (10536 bp)
misc_feature <2364..2630 /gene="AGO1" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:293095" misc_feature 2661..2810 /gene="AGO1" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:285861" misc_feature 2811..3173 /gene="AGO1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD...
XM_015246500.2 - Vicugna pacos (alpaca) - NCBI
PREDICTED: Coturnix japonica argonaute RISC catalytic component 3 (AGO3), transcript variant X1, mRNA. (10160 bp)
misc_feature 248..2842 /gene="AGO3" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 296..739 /gene="AGO3" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:293095" misc_feature 770..919 /gene="AGO3" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:285861" misc_feature 920..1282 /gene="AGO3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been...
XM_015883233.2 - Coturnix japonica (Japanese quail) - NCBI
PREDICTED: Coturnix japonica argonaute RISC catalytic component 3 (AGO3), transcript variant X3, mRNA. (10133 bp)
misc_feature 248..2815 /gene="AGO3" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 296..739 /gene="AGO3" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:293095" misc_feature 770..919 /gene="AGO3" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:285861" misc_feature 920..1282 /gene="AGO3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been...
XM_015883234.2 - Coturnix japonica (Japanese quail) - NCBI
PREDICTED: Xenopus tropicalis argonaute 4, RISC catalytic component (ago4), transcript variant X8, mRNA. (6515 bp)
misc_feature 112..2649 /gene="ago4" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 121..534 /gene="ago4" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:293095" misc_feature 568..717 /gene="ago4" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:285861" misc_feature 718..1080 /gene="ago4" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been...
XM_004911574.4 - Xenopus tropicalis (tropical clawed frog) - NCBI
PREDICTED: Xenopus tropicalis argonaute 4, RISC catalytic component (ago4), transcript variant X7, mRNA. (6521 bp)
misc_feature 112..2655 /gene="ago4" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 121..534 /gene="ago4" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:293095" misc_feature 568..717 /gene="ago4" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:285861" misc_feature 718..1080 /gene="ago4" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been...
XM_012957371.3 - Xenopus tropicalis (tropical clawed frog) - NCBI
PREDICTED: Xenopus tropicalis argonaute 4, RISC catalytic component (ago4), transcript variant X6, mRNA. (6527 bp)
misc_feature 118..2661 /gene="ago4" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 127..540 /gene="ago4" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:293095" misc_feature 574..723 /gene="ago4" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:285861" misc_feature 724..1086 /gene="ago4" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been...
XM_012957370.3 - Xenopus tropicalis (tropical clawed frog) - NCBI
PREDICTED: Xenopus tropicalis argonaute 3, RISC catalytic component (ago3), transcript variant X2, mRNA. (5898 bp)
misc_feature 1003..3522 /gene="ago3" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 1003..1446 /gene="ago3" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:293095" misc_feature 1477..1626 /gene="ago3" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:285861" misc_feature 1627..1989 /gene="ago3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain...
XM_002936224.5 - Xenopus tropicalis (tropical clawed frog) - NCBI
PREDICTED: Xenopus tropicalis argonaute 3, RISC catalytic component (ago3), transcript variant X1, mRNA. (5902 bp)
misc_feature 1004..3526 /gene="ago3" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 1004..1447 /gene="ago3" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:293095" misc_feature 1478..1627 /gene="ago3" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:285861" misc_feature 1628..1990 /gene="ago3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain...
XM_004911571.4 - Xenopus tropicalis (tropical clawed frog) - NCBI
PREDICTED: Cucumis sativus protein argonaute PNH1 (LOC101213206), transcript variant X2, mRNA. (3060 bp)
misc_feature 388..2940 /gene="LOC101213206" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 388..816 /gene="LOC101213206" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:293095" misc_feature 847..996 /gene="LOC101213206" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:285861" misc_feature 997..1341 /gene="LOC101213206" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference...
XM_004146242.3 - Cucumis sativus (cucumber) - NCBI
PREDICTED: Xenopus tropicalis argonaute 4, RISC catalytic component (ago4), transcript variant X5, mRNA. (6518 bp)
misc_feature 19..2652 /gene="ago4" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 118..531 /gene="ago4" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:293095" misc_feature 565..714 /gene="ago4" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:285861" misc_feature 715..1077 /gene="ago4" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been...
XM_012957369.3 - Xenopus tropicalis (tropical clawed frog) - NCBI
PREDICTED: Drosophila virilis protein argonaute-2 (LOC6624789), transcript variant X4, mRNA. (5661 bp)
misc_feature 305..2884 /gene="LOC6624789" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 347..760 /gene="LOC6624789" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:293095" misc_feature 791..940 /gene="LOC6624789" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:285861" misc_feature 941..1303 /gene="LOC6624789" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway...
XM_015174245.2 - Drosophila virilis - NCBI
Phytophthora infestans T30-4 Argonaute5 (AGO5) (PITG_01444) mRNA, complete cds. (2496 bp)
misc_feature <103..459 /locus_tag="PITG_01444" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:293095" misc_feature 124..2490 /locus_tag="PITG_01444" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 493..633 /locus_tag="PITG_01444" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:285861" misc_feature 637..981 /locus_tag="PITG_01444" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA...
XM_002908063.1 - Phytophthora infestans T30-4 - NCBI
PREDICTED: Xenopus tropicalis argonaute 4, RISC catalytic component (ago4), transcript variant X4, mRNA. (6587 bp)
misc_feature 184..2721 /gene="ago4" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 193..606 /gene="ago4" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:293095" misc_feature 640..789 /gene="ago4" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:285861" misc_feature 790..1152 /gene="ago4" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been...
XM_002938838.5 - Xenopus tropicalis (tropical clawed frog) - NCBI
PREDICTED: Xenopus tropicalis argonaute 4, RISC catalytic component (ago4), transcript variant X3, mRNA. (6594 bp)
misc_feature 185..2728 /gene="ago4" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 194..607 /gene="ago4" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:293095" misc_feature 641..790 /gene="ago4" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:285861" misc_feature 791..1153 /gene="ago4" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been...
XM_012957367.3 - Xenopus tropicalis (tropical clawed frog) - NCBI
PREDICTED: Xenopus tropicalis argonaute 4, RISC catalytic component (ago4), transcript variant X2, mRNA. (6600 bp)
misc_feature 197..2734 /gene="ago4" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 206..619 /gene="ago4" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:293095" misc_feature 653..802 /gene="ago4" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:285861" misc_feature 803..1165 /gene="ago4" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been...
XM_004911573.4 - Xenopus tropicalis (tropical clawed frog) - NCBI
PREDICTED: Xenopus tropicalis argonaute 4, RISC catalytic component (ago4), transcript variant X1, mRNA. (6607 bp)
misc_feature 198..2741 /gene="ago4" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 207..620 /gene="ago4" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:293095" misc_feature 654..803 /gene="ago4" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:285861" misc_feature 804..1166 /gene="ago4" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been...
XM_004911572.4 - Xenopus tropicalis (tropical clawed frog) - NCBI
PREDICTED: Cucumis sativus protein argonaute PNH1 (LOC101213206), transcript variant X1, mRNA. (3016 bp)
misc_feature 344..2896 /gene="LOC101213206" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 344..772 /gene="LOC101213206" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:293095" misc_feature 803..952 /gene="LOC101213206" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:285861" misc_feature 953..1297 /gene="LOC101213206" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference...
XM_011658301.2 - Cucumis sativus (cucumber) - NCBI
PREDICTED: Drosophila virilis protein argonaute-2 (LOC6624789), transcript variant X3, mRNA. (5740 bp)
misc_feature 384..2963 /gene="LOC6624789" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 426..839 /gene="LOC6624789" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:293095" misc_feature 870..1019 /gene="LOC6624789" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:285861" misc_feature 1020..1382 /gene="LOC6624789" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference...
XM_015174246.2 - Drosophila virilis - NCBI
PREDICTED: Drosophila ananassae protein argonaute-2 (LOC6494017), transcript variant X4, mRNA. (5030 bp)
misc_feature 397..2790 /gene="LOC6494017" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 397..810 /gene="LOC6494017" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:293095" misc_feature 841..990 /gene="LOC6494017" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:285861" misc_feature 991..1353 /gene="LOC6494017" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway...
XM_014907056.2 - Drosophila ananassae - NCBI
Phytophthora infestans T30-4 Argonaute4 (AGO4) (PITG_01443) mRNA, complete cds. (2580 bp)
misc_feature 100..2490 /locus_tag="PITG_01443" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 100..543 /locus_tag="PITG_01443" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:293095" misc_feature 577..720 /locus_tag="PITG_01443" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:285861" misc_feature 760..1065 /locus_tag="PITG_01443" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA...
XM_002908062.1 - Phytophthora infestans T30-4 - NCBI
PREDICTED: Cucumis sativus protein argonaute 10 (LOC101221352), transcript variant X2, mRNA. (3459 bp)
misc_feature 889..3456 /gene="LOC101221352" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 889..1320 /gene="LOC101221352" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:293095" misc_feature 1351..1500 /gene="LOC101221352" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:285861" misc_feature 1501..1845 /gene="LOC101221352" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA...
XM_011652654.2 - Cucumis sativus (cucumber) - NCBI
PREDICTED: Coturnix japonica argonaute RISC component 4 (LOC107323822), transcript variant X1, mRNA. (5480 bp)
misc_feature 124..2661 /gene="LOC107323822" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 133..546 /gene="LOC107323822" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:293095" misc_feature 580..729 /gene="LOC107323822" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:285861" misc_feature 730..1092 /gene="LOC107323822" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference...
XM_015883235.2 - Coturnix japonica (Japanese quail) - NCBI
PREDICTED: Drosophila ananassae protein argonaute-2 (LOC6494017), transcript variant X3, mRNA. (5105 bp)
misc_feature 472..2865 /gene="LOC6494017" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 472..885 /gene="LOC6494017" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:293095" misc_feature 916..1065 /gene="LOC6494017" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:285861" misc_feature 1066..1428 /gene="LOC6494017" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference...
XM_014907055.2 - Drosophila ananassae - NCBI
PREDICTED: Drosophila virilis protein argonaute-2 (LOC6624789), transcript variant X1, mRNA. (6087 bp)
misc_feature 731..3310 /gene="LOC6624789" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 773..1186 /gene="LOC6624789" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:293095" misc_feature 1217..1366 /gene="LOC6624789" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:285861" misc_feature 1367..1729 /gene="LOC6624789" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference...
XM_002049304.3 - Drosophila virilis - NCBI
PREDICTED: Cucumis sativus protein argonaute 10 (LOC101221352), transcript variant X1, mRNA. (3865 bp)
misc_feature 793..3360 /gene="LOC101221352" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 793..1224 /gene="LOC101221352" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:293095" misc_feature 1255..1404 /gene="LOC101221352" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:285861" misc_feature 1405..1749 /gene="LOC101221352" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA...
XM_004134066.3 - Cucumis sativus (cucumber) - NCBI
PREDICTED: Drosophila ananassae protein argonaute-2 (LOC6494017), transcript variant X2, mRNA. (6051 bp)
misc_feature 1418..3811 /gene="LOC6494017" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 1418..1831 /gene="LOC6494017" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:293095" misc_feature 1862..2011 /gene="LOC6494017" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:285861" misc_feature 2012..2374 /gene="LOC6494017" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference...
XM_014907057.2 - Drosophila ananassae - NCBI
PREDICTED: Sarcophilus harrisii argonaute RISC component 1 (AGO1), mRNA. (7566 bp)
misc_feature 243..635 /gene="AGO1" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:318646" misc_feature 663..815 /gene="AGO1" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:312283" misc_feature 816..1178 /gene="AGO1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212"...
XM_003765340.4 - Sarcophilus harrisii (Tasmanian devil) - NCBI
PREDICTED: Drosophila ananassae protein argonaute-2 (LOC6492932), mRNA. (3280 bp)
misc_feature 757..3057 /gene="LOC6492932" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 757..1155 /gene="LOC6492932" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:293095" misc_feature 1186..1329 /gene="LOC6492932" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:285861" misc_feature 1336..1680 /gene="LOC6492932" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference...
XM_001956642.3 - Drosophila ananassae - NCBI
PREDICTED: Papio anubis argonaute RISC component 4 (AGO4), transcript variant X4, mRNA. (4493 bp)
misc_feature 280..534 /gene="AGO4" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:339747" misc_feature 571..717 /gene="AGO4" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:337161" misc_feature 718..1080 /gene="AGO4" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212"...
XM_009204706.4 - Papio anubis (olive baboon) - NCBI
PREDICTED: Papio anubis argonaute RISC component 4 (AGO4), transcript variant X3, mRNA. (4884 bp)
misc_feature 671..925 /gene="AGO4" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:339747" misc_feature 962..1108 /gene="AGO4" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:337161" misc_feature 1109..1471 /gene="AGO4" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212"...
XM_009204700.4 - Papio anubis (olive baboon) - NCBI

Data Export:

Maximum 10000 results can be retrieved as Tab-delimited text or JSON format.

Debug Info:

Redirect URI : http://ggrna.dbcls.jp/en/Argonaute
lang : en | div : | spe : | query_string : Argonaute | format : html | download :

0.000 | 0.000 | search_start;
0.083 | 0.083 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=((full_search:*:Argonaute)%7C(nt:Argonaute)%7C(aa:Argonaute))?to=0&format=json
0.199 | 0.116 | search_done; http://172.18.8.71:7700/v1/refseq/query?q=((full_search:*:Argonaute)%7C(nt:Argonaute)%7C(aa:Argonaute))?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.205 | 0.006 | cgi_end;

GGRNA ver.2 by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]