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Previous release (v1)
2024-11-23 17:17:40, GGRNA : RefSeq release 226 (Sep, 2024)
Summary:
Results:
Matches are highlighted with green background.
Overlapping matches are dark colored.
LOCUS XM_009291199 1610 bp mRNA linear VRT 08-SEP-2024 DEFINITION PREDICTED: Danio rerio vimentin-related 2 (vimr2), mRNA. ACCESSION XM_009291199 VERSION XM_009291199.4 DBLINK BioProject: PRJNA13922 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007125.7) annotated using gene...
XM_009291199.4 -
Danio rerio (zebrafish) -
NCBI -
UCSC
LOCUS XM_021470110 1463 bp mRNA linear VRT 08-SEP-2024 DEFINITION PREDICTED: Danio rerio vimentin (vim), transcript variant X1, mRNA. ACCESSION XM_021470110 VERSION XM_021470110.2 DBLINK BioProject: PRJNA13922 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007135.7) annotated...
Synonym: cb28
XM_021470110.2 -
Danio rerio (zebrafish) -
NCBI -
UCSC
LOCUS NM_200773 1680 bp mRNA linear VRT 27-DEC-2022 DEFINITION Danio rerio vimentin like (viml), mRNA. ACCESSION NM_200773 XM_697268 VERSION NM_200773.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC059604.1. On Jul 6, 2005 this sequence version replaced XM_697268.1. ##...
Synonym: zgc:73275
NM_200773.1 -
Danio rerio (zebrafish) -
NCBI -
UCSC
"vim" /gene_synonym="cb28" /inference="alignment:Splign:2.1.0" exon 1026..1246 /gene="vim" /gene_synonym="cb28" /inference="alignment:Splign:2.1.0" exon 1247..1290 /gene="vim" /gene_synonym="cb28" /inference="alignment:Splign:2.1.0" exon 1291..1373 /gene="vim" /gene_synonym="cb28" /inference="alignment:Splign:2.1.0" exon 1374..1797 /gene="vim" /gene_synonym="cb28" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 1824) AUTHORS Aragona,M., Porcino,C., Briglia,M., Mhalhel,K., Abbate,F., Levanti,M., Montalbano,G., Laura,R., Lauriano,E.R., Germana,A. and Guerrera,M.C. TITLE Vim...
Synonym: cb28
NM_131872.2 -
Danio rerio (zebrafish) -
NCBI -
UCSC
CU856378.10 17990-18079 c 564-636 CU856378.10 17849-17921 c 637-3735 CU856378.10 13445-16543 c FEATURES Location/Qualifiers source 1..3735 /organism="Danio rerio" /mol_type="mRNA" /strain="Tuebingen" /db_xref="taxon:7955" /chromosome="7" /map="7" gene 1..3735 /gene="selenos" /gene_synonym="sels; vimp; wu:fc16a03; zgc:136970" /note="selenoprotein S" /db_xref="GeneID:735249" /db_xref="ZFIN:ZDB-GENE-060804-1" exon 1..231 /gene="selenos" /gene_synonym="sels; vimp; wu:fc16a03; zgc:136970" /inference="alignment:Splign:2.1.0" misc_feature 144..146 /gene="selenos" /gene_synonym="sels; vimp; wu:...
Synonym: sels;
vimp; wu:fc16a03; zgc:136970
NM_001045334.3 -
Danio rerio (zebrafish) -
NCBI -
UCSC
Data Export:
Maximum 10000 results can be retrieved as Tab-delimited text or JSON format.
Debug Info:
Redirect URI : http://ggrna.dbcls.jp/dr/symbol%3aVIM
lang : en |
div : |
spe : dr |
query_string : symbol:VIM |
format : html |
download :
0.000 | 0.000 | search_start;
0.153 | 0.153 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=(full_search:symbol,synonym:VIM)?source=Danio rerio (zebrafish)?to=0&format=json
0.240 | 0.087 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=(full_search:symbol,synonym:VIM)?source=Danio rerio (zebrafish)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.240 | 0.001 | cgi_end;
GGRNA ver.2 by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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