GGRNA ver.2 Help | Advanced search | Japanese    Previous release (v1)

2026-03-04 06:27:37, GGRNA : RefSeq release 233 (Jan, 2026)

Summary:

Results:

Matches are highlighted with green background. Overlapping matches are dark colored.

Danio rerio zgc:153322 (zgc:153322), mRNA. (776 bp)
id="NP_001038898.2" /db_xref="GeneID:751723" /db_xref="ZFIN:ZDB-GENE-060825-73" /translation="MDDENWETDAVMVATAPAPAELPEVKLFGRWSCEDVQVSDMSLQDYIAVKENYAKFIPHSAGRYAAKRFRKAQCPIVERVTNSLMMHGRNNGKKLMAVRIMKHAMEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR" misc_feature 119..679 /gene="zgc:153322" /note="Eukaryota homolog of Ribosomal Protein S7; Region: uS7_Eukaryote; cd14867" /db_xref="CDD:271246" misc_feature order(119..121,206..214,218..229,326..328,338..340) /gene="zgc:153322" /note="S9 interface [polypeptide binding]; other site" /db_xref...
AA_position 201
NM_001045433.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio low density lipoprotein receptor-related protein associated protein 1 (lrpap1), mRNA. (2075 bp)
gene_synonym="wu:fi20f07; wu:fi22c06" /codon_start=1 /product="alpha-2-macroglobulin receptor-associated protein precursor" /protein_id="NP_958463.2" /db_xref="GeneID:333939" /db_xref="ZFIN:ZDB-GENE-030131-5871" /translation="MQLLILVSLFAVGAMAGKYSKEMNEKNASDKSNSQVEFRIAKLNQVWEKAIRMQLAPVRLSELHSDLKIQEKDELQWKKLKAEGMDEDGEREAKLRRNFNIILAKYGMDGKKDTRTLDSNRLKDHEVKVGDTFDDPKLDKLWNKARTSGKFSDEELQTLHREFQHHKDKIHEYNIVMDTVSRTEEIHKNVISPLEGDVKENVLHQKHTDLKQRMRDLNQGFERLRKITHEGYTDDSEFREPRVIELWEMAKRSNLSKDELDSLKEELRHFETKVEKHQHYQEQLELSHQKLKHVEALGDEDHIMRNKEKYNTLAEKAREMGYKMKKHLQDLTNKLSKNGLQHNEL" misc_feature 116..460 /gene...
AA_position 72
Synonym: wu:fi20f07; wu:fi22c06
NM_201306.2 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio B cell receptor associated protein 31 (bcap31), mRNA. (1138 bp)
protein_id="NP_956386.1" /db_xref="GeneID:368488" /db_xref="ZFIN:ZDB-GENE-030616-63" /translation="MSLQWTAVATFLYAEVLAVLLLCVPFISPKRWSKFFKSRLVTAITSYGNTAFIVIICILVFLLIDAFREVRKYSVAEKVDLSNNPVAIEHIHMKLFRAQRNEYIAGFALLLCLLLRRLATLLSQQATLMASHEAFQKQAEGANDAAKKYMEENEKLQEKLRQAGIEVPEVGGKAKGGMEEDKKNLKEEVRQLKDELDATKKALQKSDSDVKAMKKQAENLTTEYDRLLEEHARLQAKCDAQQDKKSD" misc_feature 106..>426 /gene="bcap31" /gene_synonym="si:bz30i22.4; si:rp71-30i22.4; zgc:56389" /note="Bap31/Bap29 transmembrane region; Region: Bap31; pfam05529" /db_xref="CDD:461673" misc_feature 837 /gene="bcap31" /gene_synonym="si:bz30i22.4; si:...
AA_position 193
Synonym: si:bz30i22.4; si:rp71-30i22.4; zgc:56389
NM_200092.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio integral membrane protein 2Cb (itm2cb), mRNA. (1823 bp)
gene="itm2cb" /gene_synonym="fj35c02; itm2c; wu:fj35c02; zgc:66349" /note="integral membrane protein 2C" /codon_start=1 /product="integral membrane protein 2Cb" /protein_id="NP_956274.1" /db_xref="GeneID:335863" /db_xref="ZFIN:ZDB-GENE-030131-7806" /translation="MVKISFQQVTVQKPEKENDGDKEEIQMPYSHKDELVLPVRSKKSPFSGLWCVVLGLVIFLSGLIMASVCLYRYYFNPQIPEDSFFHCRMMYEDPVFAPLLGRQELEEKVGIYLDDNYEQISVPVPDFGSGDPADIIHDFHRGLTAYYDIALDKCYVIELNTTIVMPPRNLWELLVNVKRGTYLPQTYMIQEEMVVTGRVRNLRQLGPFIHRLCYAKETYRLRRRSGQRRIDKRETKNCHTIRHFENTFAVETKICERLLL" misc_feature 456..734 /gene="itm2cb" /gene_synonym="fj35c02; itm2c; wu:...
AA_position 32
Synonym: fj35c02; itm2c; wu:fj35c02; zgc:66349
NM_199980.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio LRAT domain containing 1 (lratd1), mRNA. (1966 bp)
Splign:2.1.0" CDS 173..955 /gene="lratd1" /gene_synonym="fam84a; zgc:63724" /note="family with sequence similarity 84, member A" /codon_start=1 /product="protein LRATD1" /protein_id="NP_956912.1" /db_xref="GeneID:393590" /db_xref="ZFIN:ZDB-GENE-040426-1247" /translation="MGNQLDRITHLNYSELPTGDPSGIEKDELRVGVAYFFSDEEEELDDRSQSDSFKDNNSPSKDGPVARNEIEYTAFCCQECIYSKLRENEDLNVYSVKTLLTMCKPGDLLELVANAQPPHWAIFEGEDQVIHLYKGEIRKDSLFEISCGRQARIVNNRYRYRPLPADLVMQNASGHVGLSSGEICWTNSESFAAWCRFGKREFKAGGEVHSVEQRYFLKVHLSESTAHTLMFRSLEEMIRERRRVDASGILKELSLVTGKE" misc_feature 527..769 /gene="lratd1" /gene_synonym="fam84a; zgc...
AA_position 26
Synonym: fam84a; zgc:63724
NM_200618.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio ring finger protein 24 (rnf24), mRNA. (1603 bp)
CDS 332..781 /gene="rnf24" /gene_synonym="zgc:103462" /codon_start=1 /product="RING finger protein 24" /protein_id="NP_001007353.1" /db_xref="GeneID:492480" /db_xref="ZFIN:ZDB-GENE-041114-40" /translation="MTSDLQHYSFRMPNIGFQNLPLNIYIVVFGTAIFVFILSLLFCCYLIRLRHQAHKELYAYKQVIQKEKVKELNLHEICAVCLEEFKQKDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQQQSMSEPIAPTQQHLPGVENLV" misc_feature 557..718 /gene="rnf24" /gene_synonym="zgc:103462" /note="RING finger, H2 subclass, found in RING finger protein 24 (RNF24) and similar proteins; Region: RING-H2_RNF24; cd16675" /db_xref="CDD:438337" exon 475..517 /gene="rnf24" /...
AA_position 88
Synonym: zgc:103462
NM_001007352.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio four and a half LIM domains 5 (fhl5), mRNA. (1180 bp)
gene="fhl5" /gene_synonym="zgc:92375" /codon_start=1 /product="four and a half LIM domains protein 5" /protein_id="NP_001004112.1" /db_xref="GeneID:445475" /db_xref="ZFIN:ZDB-GENE-040822-3" /translation="MSTERFDCHYCKDTLLGKKYILKEDTQYCTKCYENLFANCCEVCSLPIGCNCKDLSYKDRHWHENCFKCAKCSRSLVDKPFAAKDELMLCTECYSHEYSSKCSTCKKTVMPGSRKMEYKGNSWHETCFLCQRCQQPIGTKSFIPKDNNYFCVPCFEKQFAYQCCACKKAITTGGVTYHDKPWHRECFTCIGCKRQLAGQRFTSRENYPYCLDCFSNLYAKKCVGCTKAITSLAGAKYISFEERQWHSECFTCMQCSVSLVGRGFLTQRDDILCTDCGREK" misc_feature 146..322 /gene="fhl5" /gene_synonym="zgc:92375" /note="The first LIM domain of Four and a half LIM...
AA_position 84
Synonym: zgc:92375
NM_001004112.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio small nuclear ribonucleoprotein polypeptide A (snrpa), mRNA. (1342 bp)
inference="alignment:Splign:2.1.0" CDS 43..888 /gene="snrpa" /gene_synonym="fc19d01; wu:fc19d01; zgc:77810" /codon_start=1 /product="U1 small nuclear ribonucleoprotein A" /protein_id="NP_955965.1" /db_xref="GeneID:324121" /db_xref="ZFIN:ZDB-GENE-030131-2841" /translation="MAGQEMRLNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRTLKMKGQAFVIFKEINSASNALRSMQGFPFYDKPMRIQYSKQDSDIIAKMKGTFVERDRKKEKKKPKVPEAGAGKKGGSGATPAMAGVPAAIPGMPPMSQAPRMMPMPGQPPYMPPPGMMPPPNMAPGQMPPGAMPPGGMMPGQMPGQMPQQVSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAAREALQGFKITQSNAMKISFAKK" misc_feature 61..327 /gene="snrpa" /gene_...
AA_position 23
Synonym: fc19d01; wu:fc19d01; zgc:77810
NM_199671.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio purine nucleoside phosphorylase 5b (pnp5b), mRNA. (1154 bp)
stop codon" CDS 51..935 /gene="pnp5b" /gene_synonym="zgc:101740" /EC_number="2.4.2.1" /codon_start=1 /product="purine nucleoside phosphorylase 5b" /protein_id="NP_001004628.1" /db_xref="GeneID:447889" /db_xref="ZFIN:ZDB-GENE-040912-54" /translation="MTPDSATGYSYEECTATADWLLKRAPERPLVGIVCGSGLGGLAKMLKDELVINYCDIPNFPQSTVHGHAGKLVFGTLKGKPCVCMQGRFHLYEGYAIQKTTMPIRVFKLMGVETVILTNAAGGLNQDFKVGDIMIIKDHINIPGFAGHNPLVGANDDRFGVRFPCMSDAYDRDLQQLVRAVADELDFSVFMRDGVYSVLGGPSFETIAECRALRQLGADAVGMSTVHEVIVARHCDMRVLALSLITNKAVMDYQSEKKANHEEVLETGALRAKQMEKLVSTVVSRIPNTPTHCS" misc_feature 84..899 /gene="pnp5b" /gene_synonym="zgc...
AA_position 47
Synonym: zgc:101740
NM_001004628.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio cytochrome b5 reductase 1 (cyb5r1), mRNA. (1711 bp)
db_xref="GeneID:336553" /db_xref="ZFIN:ZDB-GENE-030131-8497" /translation="MSYAMSTTVAVTVGVVLVSTAGLLGYYYFNRKRKILITLIDPSEKYKLRLVDKEIISHDTRRFRFALPSPEHVLGLPVGKHVYLSARIDGNLIVRPYTPVSSDDDKGFVDLVVKIYFRDVHPKFPEGGKMSQYLESLRIGDVIDFRGPGGLLEYKGAGRLDIQADKKAPAETKTVKSLGLIAGGTGITPMLQLIRDITKNPNDTTTCSLLFANQTEKDILLKDELEEIQARHSDRFKLWFTVDRAPADWEYSQGFISAEMIQDHLPPPSDDSMILMCGPPPMIQFACNPNLDKLGYRQSQRFAY" misc_feature <174..971 /gene="cyb5r1" /gene_synonym="dia1; wu:fb13e02; wu:fb15h03; zgc:56042" /note="nitrate reductase [NADPH]; Region: PLN02252" /db_xref="CDD:215141" exon 75..221 /gene="cyb5r1" /gene_synonym="dia1; wu...
AA_position 222
Synonym: dia1; wu:fb13e02; wu:fb15h03; zgc:56042
NM_200189.2 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio ribosomal protein L9 (rpl9), mRNA. (644 bp)
product="large ribosomal subunit protein uL6" /protein_id="NP_001003861.1" /db_xref="GeneID:336702" /db_xref="ZFIN:ZDB-GENE-030131-8646" /translation="MKTILSNQTVDIPDNVTVSLKGRTVTVKGPRGVLRREFNHINLELSLLGKKQKKLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQESGSLVEIRNFLGEKYIRRVRMRQGVACAVSAAQKDELVLEGNDIELVSNSAALIQQATTVRKKDIRKFLDGIYVSEKGTVVEQQED" misc_feature 1..567 /gene="rpl9" /gene_synonym="ab02c03; fa93a01; mg:ab02c03; wu:fa93a01; zgc:103730" /note="60S ribosomal protein L6; Provisional; Region: PTZ00027" /db_xref="CDD:240234" exon 1..46 /gene="rpl9" /gene_synonym="ab02c03; fa93a01; mg:...
AA_position 141
Synonym: ab02c03; fa93a01; mg:ab02c03; wu:fa93a01; zgc:103730
NM_001003861.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio ring finger protein 183 (rnf183), mRNA. (1858 bp)
EC_number="2.3.2.27" /codon_start=1 /product="E3 ubiquitin-protein ligase RNF183" /protein_id="NP_001070136.1" /db_xref="GeneID:767730" /db_xref="ZFIN:ZDB-GENE-060929-1090" /translation="MGDGREKPQSSRKGSNAKPKLDSKGSLNLGSSEQRQRADKPVRRSRSNDTENRRREASRGRERDRRDEGRPQRGRSEEGRRRGHNHEPGNRAWDKEPPKDELQDTECIVCFCNFDNVFKTPKLLSCGHTFCLECLARINVNSPEIKTLTCPICREVTEIRHGRDLPHLLNNEAIFRQLPSEMQRALSVRFKRSKGKLVLKNPPTNNSIKTTLNLPVSKKKEEQAGNNAIGAIEEGLGQATMINVGRPPNRMRGRMRRVMYSSQCYYAVVAVIISITVALMMVGIFTFVVMPNLQRPITKPLQNQTGSSAVQADSSP" misc_feature 490..654 /gene="rnf183" /gene_synonym="zgc:153310" /note="RING finger...
AA_position 99
Synonym: zgc:153310
NM_001076668.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio guanylate cyclase activator 1Ab.1 (guca1ab.1), mRNA. (2915 bp)
cyclase activator 1e" /codon_start=1 /product="guanylate cyclase activator 1Ab.1" /protein_id="NP_956950.1" /db_xref="GeneID:393629" /db_xref="ZFIN:ZDB-GENE-040426-1577" /translation="MGDSSSMSATELSACKCHQWYRKFMTECPSGQLTFYEFKKFFGLKNLSEKSNAYVNTMFKTFDIDDDGCIDFMEYVAALSLVLKGGVQQKLRWYFKLFDMDGSGCIDKDELLLIFKAVQAINGAEPEISAEDLADMVFNKIDVNGDGELSLEEFMEGISADEKISEMLTQSLDLTRIVSNIYNDSYIEQEAEIIEDQA" misc_feature 113..499 /gene="guca1ab.1" /gene_synonym="gcap5; guca1e; zgc:66243" /note="Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]; Region: FRQ1; COG5126" /db_xref="CDD:444056" exon...
AA_position 108
Synonym: gcap5; guca1e; zgc:66243
NM_200656.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio ribosomal protein S5 (rps5), mRNA. (702 bp)
uS7" /protein_id="NP_775339.1" /db_xref="GeneID:192297" /db_xref="ZFIN:ZDB-GENE-020419-12" /translation="MAEDWEAAPAVAETPEIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSSGRYAAKRFRKAQCPIVERVTNSMMMHGRNNGKKLLTVRIVKHAFEIIHLLTGENPLQILVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSYNSYAIKKKDELERVAKSNR" misc_feature 85..645 /gene="rps5" /gene_synonym="chunp6933; fc74e05; fj57h03; wu:fc74e05; wu:fj57h03" /note="Eukaryota homolog of Ribosomal Protein S7; Region: uS7_Eukaryote; cd14867" /db_xref="CDD:271246" misc_feature order(85..87,172..180,184..195,292..294,304..306) /gene="rps5" /gene_...
AA_position 193
Synonym: chunp6933; fc74e05; fj57h03; wu:fc74e05; wu:fj57h03
NM_173232.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio rhophilin associated tail protein 1-like (ropn1l), mRNA. (992 bp)
AKAP-associated sperm protein; ropporin 1-like" /codon_start=1 /product="ropporin-1-like protein" /protein_id="NP_001004624.1" /db_xref="GeneID:798354" /db_xref="ZFIN:ZDB-GENE-040724-235" /translation="MPLSETMYCAQQINIPPALPNMLKQFTKAAIRTQPRDVLQWAADYFSALSKGQDLPVKKRLELPVATQKTDTGLTPGLLKILHQQLTSKETVTKDELLPKWKALHLPVEQLDTILALGNFSENINWMQFFALACSALGGSITSALKHACEILTEDPEGGPAQIPFHMFRSLYTYLAHLDGEIPEEQIDSFLHSLEGQAQSQGGMVQPSNFTSLHTAEK" misc_feature 221..349 /gene="ropn1l" /gene_synonym="asp; bZ1F1.7; si:rp71-1f1.7; zgc:101773" /note="dimerization/docking (D/D) domain found in ropporins; Region: DD_ROP;...
AA_position 94
Synonym: asp; bZ1F1.7; si:rp71-1f1.7; zgc:101773
NM_001004624.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio ADP-ribosylation factor-like 10 (arl10), mRNA. (2967 bp)
start=1 /product="ADP-ribosylation factor-like 10" /protein_id="NP_001373165.2" /db_xref="GeneID:560654" /db_xref="ZFIN:ZDB-GENE-091204-51" /translation="MVVLRHFSVAFSAAMAAVGTALFIALNLFYKRRVWTPESEYFTFREEEEERSEKQVLVLGLDGAGKSSVLQGLSGAGYRRGCRPTRGFNFISLHTPACQLDFLEIGGGEDLRMYWADYLRRTNILVYVVDSSDRSRLPQAKDELHRLLKAETDLPVVVLGNKQDKPDAVSVPELREALSLSSVADQRKLFLLAAQSGSDGLSRTCSLQKIQDLLLKLV" misc_feature 197..688 /gene="arl10" /gene_synonym="si:ch211-153m12.1" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop_NTPase; cl38936" /db_xref="CDD:476819" misc_feature 212..235 /gene="arl10" /gene...
AA_position 141
Synonym: si:ch211-153m12.1
NM_001386236.2 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio phospholipase A2, group XIIB (pla2g12b), transcript variant 2, mRNA. (2297 bp)
GeneID:406739" /db_xref="ZFIN:ZDB-GENE-040426-2771" /translation="MFPRALPLLLLCISAGLAATLIQASVDAASVDSPAGESPDVNQENQAEHVLMADAPVEGKPAPSATEESEDDDDWGFGSIRGSLQSVNGYFDSILELMGGRDGVCQFRCRYGKAPQPRPGYQMSEPDGCSTSLLGFQFDMGVPAMTKCCNQLDICYETCGSNKYRCDTKFRWCLHSICGDLKKSLGLMSKVEACETFADTMYNTVWTLGCRPFMNGQRASCYCEGEEKDEL" sig_peptide 65..148 /gene="pla2g12b" /gene_synonym="wu:fb26d02; wu:fb99g06; wu:fc91d12; zgc:111897; zgc:56487; zgc:77746" /inference="COORDINATES: ab initio prediction:SignalP:6.0" misc_feature 242..757 /gene="pla2g12b" /gene_synonym="wu:fb26d02; wu:fb99g06; wu:fc91d12; zgc:111897; zgc:56487; zgc...
AA_position 228
Synonym: wu:fb26d02; wu:fb99g06; wu:fc91d12; zgc:111897; zgc:56487; zgc:77746
NM_213430.2 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio phospholipase A2, group XIIB (pla2g12b), transcript variant 1, mRNA. (2309 bp)
GeneID:406739" /db_xref="ZFIN:ZDB-GENE-040426-2771" /translation="MFPRALPLLLLCISAGLAATLIQASVDAASVDSPAGESPDVNQENQAEHVLMADAPVEGKPAPSATEESEDDDDWGFGSIRGSLQSVNGYFDSILELMGGRDGVCQFRCRYGKAPQPRPGYQMSEPDGCSTSLLGFQVPNSFDMGVPAMTKCCNQLDICYETCGSNKYRCDTKFRWCLHSICGDLKKSLGLMSKVEACETFADTMYNTVWTLGCRPFMNGQRASCYCEGEEKDEL" sig_peptide 65..148 /gene="pla2g12b" /gene_synonym="wu:fb26d02; wu:fb99g06; wu:fc91d12; zgc:111897; zgc:56487; zgc:77746" /inference="COORDINATES: ab initio prediction:SignalP:6.0" misc_feature 242..769 /gene="pla2g12b" /gene_synonym="wu:fb26d02; wu:fb99g06; wu:fc91d12; zgc:111897; zgc:56487; zgc...
AA_position 232
Synonym: wu:fb26d02; wu:fb99g06; wu:fc91d12; zgc:111897; zgc:56487; zgc:77746
NM_001442038.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio CD2 (cytoplasmic tail) binding protein 2 (cd2bp2), mRNA. (1387 bp)
MSKRKVTFQDGDSEITLEEEIPKKKMVDGLTGPGSRFKEKHSLDSDEEDEVEDVDNSSKYDILASDDVEGQEGATIDYDEGVRITPFNLDEEMQEGHFDSEGNYFVNKEKDIRDNWLDNIDWVKVKEQPVKKKKGLAAKRKRRVGDEDEAEEEIKREEQRNDSEDEEEEKEKEPAEDPLAAYSHYQLTEAIIELLLPGETVSAALRRLGGLGGQKKKGRQRNGEEEKKEASNRDADKLDKLTALADRLVGIGEFEIYQQTYEKLAYQLKGMTRGKAAKTLGDEEEDKDELDMFGDDFDEKHDADKNEDNDNRKVSDEVMWEYKWENKESSELYGPFSSQQVQDWVDEGYFNDGVYCRRIGQEGASFYNSKRIDFDLYT" misc_feature 1007..1189 /gene="cd2bp2" /gene_synonym="zgc:56165" /note="GYF domain: contains conserved Gly-Tyr-Phe residues; Proline-binding domain in CD2-binding and other proteins. Involved in signaling lymphocyte...
AA_position 287
Synonym: zgc:56165
NM_200961.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio SERPINE1 mRNA binding protein 1a (serbp1a), mRNA. (2317 bp)
db_xref="GeneID:335449" /db_xref="ZFIN:ZDB-GENE-030131-7389" /translation="MPGHLQEGFGCVVTNRFDQLFDDEEDPFEVLKQAEKKKKDATVPGAAKTAAQAAKQPKKESQKERRNPLPDKKEETQAPVPLKKDGMRKMGRRPEQQGQQGSVPQQQAGQGEGRPPADRRPDRRPPRERRFDKPADEKPAEGGEFSVEKTMGDRPFRGRGGPRGGRGGRGRGVGRTDGFDSRGKREFDRHSGSDRSLKAEEKRGGSGSHNWGTVKDELSELDQSNVTEDTPEGEEHPPADSENKENEVEEAKEEGPKEMSLDEWKAQQDKERAKVEFNIRKANEGADWKKGYVLHKSKAEDASADDAAGDHHFRKPANDITSQLEINFGDLGRPGRGRGGPRGGRGGRGAAAATRPPRERRPDKVGGVSVPNVDDPEAFPALA" misc_feature 86..>358 /gene="serbp1a" /gene_synonym="hm:zeh0245; PAI-RBP1; serbp1; wu:fa12d05; wu:fb36e07; wu:fc16f12; wu:fj13e12; zgc...
AA_position 223
Synonym: hm:zeh0245; PAI-RBP1; serbp1; wu:fa12d05; wu:fb36e07; wu:fc16f12; wu:fj13e12; zgc:55489
NM_214714.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio nucleophosmin 1a (npm1a), mRNA. (1601 bp)
synonym="npm1; sb:cb487" /note="nucleophosmin 1; nucleophosmin 1a (nucleolar phosphoprotein B23, numatrin)" /codon_start=1 /product="nucleophosmin 1a" /protein_id="NP_955460.3" /db_xref="GeneID:266985" /db_xref="ZFIN:ZDB-GENE-021028-1" /translation="MDLEQMGPQTFLYGCELKAGKDITFNPEDDDYDHQLSVRMACVDPSTKDELNVVEIEGQDSEGQKVKAVLATLKPSTLPSVCLGGFEITPPVVFRLRTGSGPVHISGQHLVIMGGDQSFDEEEEEEEEEETVMTSKKRPALSTPKPSKKMKMDEEDDDDDDEDDDDDEDDDEEDESEEESPVKEKKAPAKPKTPTQNGKGPKPSTPAKQTPQKGKKEQTPKMPQTPRTLADIKSKMMESVAKGVSLPKVQLKFENYVNNCFKGTDPKVVEELWKWRQTVK" misc_feature 167..466 /gene="npm1a" /gene_synonym="npm1; sb:cb487" /...
AA_position 48
Synonym: npm1; sb:cb487
NM_199428.3 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio carbonic anhydrase 8 (inactive) (ca8), mRNA. (2294 bp)
CDS 414..1259 /gene="ca8" /gene_synonym="zgc:110118" /EC_number="4.2.1.1" /note="CARP VIII; carbonic anhydrase VIII" /codon_start=1 /product="carbonic anhydrase-related protein" /protein_id="NP_001017571.2" /db_xref="GeneID:550233" /db_xref="ZFIN:ZDB-GENE-050417-26" /translation="MADNVIEESGNYPGKDELDWGYEEGVEWGLLFPEANGEYQSPINLNSREARYDPQLLDVGLNPNYVVCRDCEVINDGHTVRIMLKSKSVVTGGPLPSDHEYELSEVRFHWGKENQRGSEHTVNFKAFPMELHLIHWNSTLFNSVEEAMGKKRGILIIALFVQVGKEHLGLKAITDVLQDLQYKGKTKIIPCFNPNTLLPDPLLRDYWVYEGSLTTPPCSENVTWILYRYPLTISQMQIEEFRRLRSHVKGAELPEGNDGMLGDNFRPTQPLSDRVVRAAFQ" misc_feature 486..1253 /gene="ca8" /...
AA_position 15
Synonym: zgc:110118
NM_001017571.2 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio prolactin regulatory element binding (preb), mRNA. (1809 bp)
id="NP_001002638.1" /db_xref="GeneID:436911" /db_xref="ZFIN:ZDB-GENE-040718-385" /translation="MGKRRAPELYRAPFPLYTVKMDPRTGLIITAGGGGASKTGIKNAVHFLSLDLVGGAHSATLLHTHETDTRATMNMCLGGDVMAAGQDDTCRLMKFSLHEAKHNKKPAAKDGTGDKGGARKRAGKGQNADGGEGDAAQMKQDSTQISVQDLGSVQADFSPQDPCVKCVRFSLDLTLLLSGGADGFVRVWEFPSLKEKLNFRAHKDELEDIDISPDKKHIVTVGRDFECSVWSGDQLAVGLCWHENMPQITEKTYRYKACRFAKVEDQKDALRLYTVQIPHKRDRKPPPCYITKWDGRAFLPLLTKPCGNEVISCLTASDSGTFLGLGTVTGSVAIYIAFSLQKLYYIQESHGIVVTDLTFLPDAPKTKAVKGDNEVVMLSVAVDSRCQVHAVSNRRSFPLWLVLFFCGLMVVAVILLLQSFFPGFI" misc_feature 868 /gene="preb" /gene_synonym="sb:cb385; wu:fj59h11; zgc...
AA_position 203
Synonym: sb:cb385; wu:fj59h11; zgc:92203
NM_001002638.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio zgc:153896 (zgc:153896), mRNA. (1480 bp)
ALFLSVNGKPLSERRTYNKLLLISFDGFRWDYDQDVDTPNLDKLVKEGVKAKYINPPALTMTSPSHFTTITGRWIEDHGVVHNLMFNDTTGLRVPHKATLKKSEWWDNGVLPLWITAQKQGLKTASFYYPGGGVNYSGQAVNRFLVENHGSPDDNETEWQQNIDTVMGWFAKEDFDFVTLYYGEPDNVGHAVGPETHERRKIIEQIDRTIGYLRESIHKNALTDHLNVILTSDHGMTTIKNATEVKEIVLANYISLLKLTRFDLLDYGGFGMITPREGKEQEVYNALKNAHPNLTVYRKDELPENFHMKKHARIQPIVLLADLGFNINSRLILDINKGDHGFSSEEMDMKMFFRAFGPDFSPNFLAEPFDSVSIYPLMCKLLGVVPEANNGSLSDTKGMLVDNFDAGGSSGRIQVSFTLLVVSTVILTLI" sig_peptide 2..52 /gene="zgc:153896" /gene_synonym="si:ch211-225l4.2" /inference="COORDINATES: ab initio prediction:SignalP:4.0" misc_feature 80..1177 /gene="zgc...
AA_position 308
Synonym: si:ch211-225l4.2
NM_001045194.2 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio protein disulfide isomerase family A, member 6 (pdia6), mRNA. (1979 bp)
LGGKTGGSDYSRQSGGGAGNKKDVVELTDDNFDRTVLESDDVWLVEFFAPWCGHCKNLEPEWTAAATEVKEQTKGKVRLAAEDATVHQGLASRFGIRGFPTIKVFRKGEEPEDYQGGRTRSDIVARALELYSDNIPAPELQEVLNEGILKKTCEDYQLCIIAVLPHILDTGASGRNSYLEVMKTMAEKHKKKMWGWLWTEAGAQMELEASLGIGGFGYPAMAAINSRKMKFALLKGSFSETGIHEFLRELSVGRGSTATVGGGALPKINTVQAWDGKDGELPMEDDIDLSDVDLDDLEKDEL" sig_peptide 27..83 /gene="pdia6" /gene_synonym="pdi-p5; pdip5; wu:fb51h08; wu:fc09e09" /inference="COORDINATES: ab initio prediction:SignalP:4.0" misc_feature 102..410 /gene="pdia6" /gene_synonym="pdi-p5; pdip5; wu:fb51h08; wu:fc09e09" /note="PDIa family, P5 subfamily; composed of eukaryotic...
AA_position 437
Synonym: pdi-p5; pdip5; wu:fb51h08; wu:fc09e09
NM_197933.2 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio monoglyceride lipase (mgll), mRNA. (1638 bp)
protein_id="NP_956591.1" /db_xref="GeneID:378960" /db_xref="ZFIN:ZDB-GENE-031006-9" /translation="MPEPEGTRRSPQGVPYSDLPHIVNADGLHLFCRYWEPDGPPKALVYVAHGAGEHCGGYADIAHSLTQHGILVFAHDHVGHGQSEGERMELKNFQIYVRDSLQHIDIMKARYPKLAVFIVGHSMGGAISILTACERPQDFTGVVLIGPMVQMSAESATPFKVFMAKVLNRLAPKLTLGPIDPKFVSRDPKQVEAYEKDELNYHGGLRVSFGMQMLDATSRIERELPDIRWPFYILHGDADKLCDIRGSRLLYNEAKSTDKKLKVYEEAYHALHHDLPETIESVLKEVSTWILERVPAPQTS" misc_feature 254..964 /gene="mgll" /gene_synonym="cb909; wu:fc66g01; zgc:56561" /note="Serine aminopeptidase, S33; Region: Hydrolase_4; pfam12146" /db_xref="CDD:463473" exon 265..371 /gene="mgll" /...
AA_position 196
Synonym: cb909; wu:fc66g01; zgc:56561
NM_200297.2 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio BRCA2 and CDKN1A interacting protein (bccip), mRNA. (1087 bp)
GeneID:541348" /db_xref="ZFIN:ZDB-GENE-050320-39" /translation="MASSAKRRAVETGQNPQDSDESSDEGLEDSGDDDSENSEEEVNEEVIVDFEAHTISDNDFHGIKTLLQQLFLKCHVNTSDLTDIIIQQNHIGSVIRQAEVPEDSDDEGDPDEVFGFISMVNLTERQGVECLEKLKDMILDQCVKCSTPDVQERMENLLQGNTQSVGLLLSERFVNVPPQIALPLHKQLQKEMAEAQRTNKPSGKCQFCLMISKTCKPLKKKSISAGDQAKDELLFVNDEEEFFYEQATVKFSYCVQDEADSCATGKWSYDDEPMKPFRTVMVIPMDRMDTIMQKMTDYLTV" misc_feature 63..191 /gene="bccip" /gene_synonym="mp:zf637-1-000774; zgc:110272" /note="propagated from UniProtKB/Swiss-Prot (Q5BJJ7.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 204..791 /gene="bccip" /...
AA_position 230
Synonym: mp:zf637-1-000774; zgc:110272
NM_001013475.2 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio retinaldehyde binding protein 1b (rlbp1b), mRNA. (1382 bp)
CRALBPb; rlbp1; zgc:77766" /note="cralbpa; rlbp1a; retinaldehyde binding protein 1" /codon_start=1 /product="retinaldehyde-binding protein 1b" /protein_id="NP_991253.1" /db_xref="GeneID:402990" /db_xref="ZFIN:ZDB-GENE-040426-1870" /translation="MAVVSGTFRMVSEEEQALRAKLEHLTVKDHGPVFEASTKVPDHTMQKAKDELNETDEKRTSAVKELRGIIKEKAETGDELAKGVQDTFGEKPDGVLVRFIRARKYDVNRAYELMKGYVRFRRDYPELFENLTPEAVRSTIEAGYPGILSSRDKYGRVVLLFNIENWDYEEITFDEILRAYCVILEKLLENEETQINGFCIIENFKGFTMQQASGIKPTELKKMVDMLQDSFPARFKAVHFIHQPWYFTTTYNVVKPLMKSKLLERVFVHGDDLENYFKEFDAEILPSDFDGKGSKYDGKITAAHLFD" misc_feature 208..381 /gene="rlbp1b" /gene_...
AA_position 49
Synonym: CRALBPb; rlbp1; zgc:77766
NM_205690.2 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio leucine zipper protein 2 (luzp2), transcript variant 2, mRNA. (2669 bp)
protein_id="NP_001092725.1" /db_xref="GeneID:100137118" /db_xref="ZFIN:ZDB-GENE-060503-278" /translation="MKFIGAVYLLFLLPALSFNSSYEGLEKKLKEVFTERTGILRHLSKTSKELDSIKGNLQSLKNEDAVPKKDVQRILELSHKQRDEMKSLQAALQKQLDDAAERAEKQQATIKFLKMEMEKKTKIIKDLQQENKSLKNKLLSGNKLCDIHAEESKKIQAQLKELRYGKKDLIFKGQQLMDLENKLKVAKDELEKAALDKESQLKALRDTVHICFSSVLHSQTASLHRFPATPTNLLRYSALVNNSRVTFQQPHMKVGSDCSHNQTESSSVMKKTFGHSQSKTPEQNGQGQARTAEESVKTDGELKKTQSDKHN" misc_feature 22..>636 /gene="luzp2" /gene_synonym="si:ch211-243k12.1; si:dkey-239j7.1; si:dkeyp-86e4.1" /note="Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB...
AA_position 187
Synonym: si:ch211-243k12.1; si:dkey-239j7.1; si:dkeyp-86e4.1
NM_001099255.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio retinaldehyde binding protein 1a (rlbp1a), mRNA. (1478 bp)
gene="rlbp1a" /gene_synonym="CRALBPa; rlbp1l; zgc:73076" /note="cralbpb; rlbp1b" /codon_start=1 /product="retinaldehyde-binding protein 1a" /protein_id="NP_956999.1" /db_xref="GeneID:393678" /db_xref="ZFIN:ZDB-GENE-040426-1662" /translation="MAATGSFRMVSEEEQALRAKLEHLTVKDHGPVYGPCMKLPDHTKQKAKDELNETDEKRASAIKELRAMIKDKAGQGDEVAKTVQDKFGKEPDSLLLRFIRARKFDVARAHELMKGYVRFRRDYPELFENLTPEAVRSTIEAGYPRILSTRDKNGRVVLLFNIDNWDLEEVTFDETLRAYCVILEKLLENEETQINGFVLIENFKGFTMQHASGIKHTELKKMVDMLQDSFPARFKAVHVIHQPWYFTTTYNVVKPFMKSKLLERVFVHGDELDGYLRDFGAEILPPDFDGTGPACDGRETAIKLFGSEDTAL" misc_feature 218..391 /gene="rlbp1a" /gene_...
AA_position 48
Synonym: CRALBPa; rlbp1l; zgc:73076
NM_200705.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio C1GALT1-specific chaperone 1 (c1galt1c1), mRNA. (3345 bp)
CDS 84..1037 /gene="c1galt1c1" /gene_synonym="fc59b02; wu:fc17f08; wu:fc59b02; zgc:66375" /codon_start=1 /product="C1GALT1-specific chaperone 1" /protein_id="NP_955961.2" /db_xref="GeneID:324052" /db_xref="ZFIN:ZDB-GENE-030131-2772" /translation="MMSEGSSFMKGMIFGGIFCLIMSFFETFNPGTHSEGHNHLHHHLKPVSKDELQKLSESQMSEFAMQVRVYCLIMVTPKLLVHWATANDTWSKHCDKSVFYTSEASKALDAVDLQEQDEWTRLRKAIQHAYENAGDLHWFFIARPTTFAIIENLKYLVLDKDPSQPFYIGHTEKSGELDYVEYDSGIVLSYEAMRRLMEVFKDEDKCPERGRALWKMSEEKQLATCLKYSGVFAENGEDAQGKGLFNKKSVSSLISDSISQNPGDVVEACCSDMAITFAGMSPSQIQVLMYGVYRLRPYGHDFHDSLTFLPPKDSDND" ORIGIN // REFERENCE 1...
AA_position 49
Synonym: fc59b02; wu:fc17f08; wu:fc59b02; zgc:66375
NM_199667.5 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio nicotinamide riboside kinase 2 (nmrk2), transcript variant 2, mRNA. (1275 bp)
codon_start=1 /product="nicotinamide riboside kinase 2 isoform 2" /protein_id="NP_001004618.3" /db_xref="GeneID:447879" /db_xref="ZFIN:ZDB-GENE-040912-44" /translation="MDAMVNTVKGWMENPVKFARSHGVSVSTTSDPDSDIHILIVEGFLLYNYKPLIDVYNKCFYVTIPYEECKRRRSTRTYTVPDPPGLFDGHVWPMYLKHRTEMENSSLDIQYLDGMSSKDELYNQVYEDIQNSLLNIL" misc_feature <264..581 /gene="nmrk2" /gene_synonym="itgb1bp3; zgc:103408" /note="Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate...
AA_position 118
Synonym: itgb1bp3; zgc:103408
NM_001004618.3 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio epidermal growth factor receptor pathway substrate 8b (eps8b), transcript variant X3, mRNA. (2010 bp)
codon_start=1 /product="epidermal growth factor receptor kinase substrate 8-like protein 2 isoform X3" /protein_id="XP_073786038.1" /db_xref="GeneID:564779" /db_xref="ZFIN:ZDB-GENE-060503-164" /translation="MNKSSRDKDNRDQQKEVNDELLKRITDNKAQPPARNFRVERSSRSIRITDESQPFEVHAWLNAKGFSRPVVECLGILNGAQLFSLSKDELKAVCGDEGSRVYSQITVQKAQIERGNGDTELQEIMRRRQQEVDSTWD" misc_feature 747..941 /gene="eps8b" /note="SAM domain of EPS8-like subfamily; Region: SAM_EPS8-like; cd09540" /db_xref="CDD:188939" ORIGIN //...
AA_position 87
XM_073929937.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio tripartite motif containing 62, tandem duplicate 1 (trim62.1), mRNA. (1758 bp)
note="upstream in-frame stop codon" CDS 277..1704 /gene="trim62.1" /gene_synonym="trim62; zgc:158653" /EC_number="2.3.2.27" /codon_start=1 /product="E3 ubiquitin-protein ligase TRIM62" /protein_id="NP_001074143.1" /db_xref="GeneID:791192" /db_xref="ZFIN:ZDB-GENE-070112-502" /translation="MASYLKDELLCSICLSIYQDPVSFGCEHYFCRKCITEHWSRQEHHGTRDCPECRRTFTDPLLSPSLKLSNIVERYTAFPLDAILNAQRNSYPCKDHEKVKLFCLSDKSLVCFFCDEPALHEQHQVTTVDVAYEEIQREMKEQLATLQDSEKGHTEALQLLQRQLTETKSSAKSLRATIGEAFERLQRFLRERQKSMLEELEADTARTLTDIEHKIQRYSQQLRDVKEGIQILQERLSETSRHEFLEGIALTSDRIKGKIHETNLTYEDFPTSKYMGPLQYTIWKSLFLDISPVPAALTMDPSTAHQRLILS...
AA_position 6
Synonym: trim62; zgc:158653
NM_001080674.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio tripartite motif containing 35-28 (trim35-28), mRNA. (1662 bp)
product="tripartite motif containing 35-28" /protein_id="NP_001103174.1" /db_xref="GeneID:559351" /db_xref="ZFIN:ZDB-GENE-071004-19" /translation="MADSSDDDITDRPPLLETDLTCPVCKDIFKEPELLSCSHSFCKVCLEGSWKNQTKRQCPMCRKCCDGETPIPNRALHNACVSYKKERNRRGATTGSEEELCGLHQRPFQLFCIKDEEPVCVECVTLHPGHELVPTEQGVPFCKDELTMKIKILESKLDSFKRMKKRYKETITFIEGQTKEAENQIKQEFERLHQVLNEEEKTRLLALSREEDEKKQVVTEKIEAIGRDITGLAELIQSVKREMGAEDLTFLLNFQKLKRRTQWTGDDPRRVYGALINMALHVGALGYKIWESMQAHVTCLPVILDPNTASPWLSISPDFSSMQESRERQSFPDNPERFDPCVFVLGSEGFSSGRHRWEVRVADHPKWILGVCKESVVRKRKFTVTTTAGVWTIGLSKGVYNALTSPRTVLNLERRPETVRVKVNMEKGEVSFWDTGNNKHLCTFNDKFTGKLF...
AA_position 143
Synonym: zgc:171672
NM_001109704.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio zgc:158423 (zgc:158423), mRNA. (1723 bp)
gene="zgc:158423" /note="upstream in-frame stop codon" CDS 59..1501 /gene="zgc:158423" /codon_start=1 /product="uncharacterized protein LOC790938" /protein_id="NP_001073552.1" /db_xref="GeneID:790938" /db_xref="ZFIN:ZDB-GENE-061215-58" /translation="MKDIELKEVDQTKQLMTRENGCVKVTVPENTAVKYTGLSKDELVKVAGTPGWIRIRWALLALFFLGWVGMLAGAIVIIVQAPRCKPIPEMHWWNEGPLYQISDVNAFTESGLKGLEGKLDYLSQMNVAGVVLGPIHSLKIDQLDTLNLISVQSEVGTENELESLLGLAHKKGIFIVLNLTPNFNKTSAWFNNFNAVAEKIKDACTYWLDKGLDGIFLSDLNEIPTDAWPSIKEIFNRSDATKEVALMGSVNSMSVNDISVLLNRSGVDLLLTGQPDLSDSGEKQAQIIKEFNSSIQQTSLGWRSRQDPGTLAAEFPIRLYQILLFTLPGTPVFSAGEELGLKAEEQLQAL...
AA_position 40
NM_001080083.1 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio guanylate cyclase activator 1Ab.1 (guca1ab.1), transcript variant X4, mRNA. (4598 bp)
gene="guca1ab.1" /gene_synonym="gcap5; guca1e; zgc:66243" /codon_start=1 /product="guanylate cyclase activator 1Ab.1 isoform X2" /protein_id="XP_073792440.1" /db_xref="GeneID:393629" /db_xref="ZFIN:ZDB-GENE-040426-1577" /translation="MAPEPPDRDHAHSRQDGCIDFMEYVAALSLVLKGGVQQKLRWYFKLFDMDGSGCIDKDELLLIFKAVQAINGAEPEISAEDLADMVFNKIDVNGDGELSLEEFMEGISADEKISEMLTQSLDLTRIVSNIYNDSYIEQEAEIIEDQA" misc_feature <152..430 /gene="guca1ab.1" /gene_synonym="gcap5; guca1e; zgc:66243" /note="Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]; Region: FRQ1; COG5126" /db_xref="CDD:444056" polyA_...
AA_position 57
Synonym: gcap5; guca1e; zgc:66243
XM_073936339.1 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio ring finger protein 24 (rnf24), transcript variant X5, mRNA. (4893 bp)
gene="rnf24" /gene_synonym="zgc:103462" /codon_start=1 /product="RING finger protein 24 isoform X2" /protein_id="XP_073799688.1" /db_xref="GeneID:492480" /db_xref="ZFIN:ZDB-GENE-041114-40" /translation="MTSDLQHYSFRMPNIGFQNLPLNIYIVVFGTAIFVFILSLLFCCYLIRLRHQAHKELYAYKQVIQKEKVKELNLHEICAVCLEEFKQKDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQQQSMSEPIAPTQQHLPGVENLV" misc_feature 596..757 /gene="rnf24" /gene_synonym="zgc:103462" /note="RING finger, H2 subclass, found in RING finger protein 24 (RNF24) and similar proteins; Region: RING-H2_RNF24; cd16675" /db_xref="CDD:438337" polyA_site 4893 /gene="rnf24" /...
AA_position 88
Synonym: zgc:103462
XM_073943587.1 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio ring finger protein 24 (rnf24), transcript variant X4, mRNA. (4891 bp)
gene="rnf24" /gene_synonym="zgc:103462" /codon_start=1 /product="RING finger protein 24 isoform X2" /protein_id="XP_073799683.1" /db_xref="GeneID:492480" /db_xref="ZFIN:ZDB-GENE-041114-40" /translation="MTSDLQHYSFRMPNIGFQNLPLNIYIVVFGTAIFVFILSLLFCCYLIRLRHQAHKELYAYKQVIQKEKVKELNLHEICAVCLEEFKQKDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQQQSMSEPIAPTQQHLPGVENLV" misc_feature 594..755 /gene="rnf24" /gene_synonym="zgc:103462" /note="RING finger, H2 subclass, found in RING finger protein 24 (RNF24) and similar proteins; Region: RING-H2_RNF24; cd16675" /db_xref="CDD:438337" polyA_site 4891 /gene="rnf24" /...
AA_position 88
Synonym: zgc:103462
XM_073943582.1 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio ring finger protein 24 (rnf24), transcript variant X3, mRNA. (5031 bp)
gene="rnf24" /gene_synonym="zgc:103462" /codon_start=1 /product="RING finger protein 24 isoform X2" /protein_id="XP_073799680.1" /db_xref="GeneID:492480" /db_xref="ZFIN:ZDB-GENE-041114-40" /translation="MTSDLQHYSFRMPNIGFQNLPLNIYIVVFGTAIFVFILSLLFCCYLIRLRHQAHKELYAYKQVIQKEKVKELNLHEICAVCLEEFKQKDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQQQSMSEPIAPTQQHLPGVENLV" misc_feature 734..895 /gene="rnf24" /gene_synonym="zgc:103462" /note="RING finger, H2 subclass, found in RING finger protein 24 (RNF24) and similar proteins; Region: RING-H2_RNF24; cd16675" /db_xref="CDD:438337" polyA_site 5031 /gene="rnf24" /...
AA_position 88
Synonym: zgc:103462
XM_073943579.1 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio ring finger protein 24 (rnf24), transcript variant X2, mRNA. (4935 bp)
gene="rnf24" /gene_synonym="zgc:103462" /codon_start=1 /product="RING finger protein 24 isoform X2" /protein_id="XP_073799679.1" /db_xref="GeneID:492480" /db_xref="ZFIN:ZDB-GENE-041114-40" /translation="MTSDLQHYSFRMPNIGFQNLPLNIYIVVFGTAIFVFILSLLFCCYLIRLRHQAHKELYAYKQVIQKEKVKELNLHEICAVCLEEFKQKDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQQQSMSEPIAPTQQHLPGVENLV" misc_feature 638..799 /gene="rnf24" /gene_synonym="zgc:103462" /note="RING finger, H2 subclass, found in RING finger protein 24 (RNF24) and similar proteins; Region: RING-H2_RNF24; cd16675" /db_xref="CDD:438337" polyA_site 4935 /gene="rnf24" /...
AA_position 88
Synonym: zgc:103462
XM_073943578.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio RNA polymerase II subunit M (polr2m), mRNA. (2687 bp)
polr2m" /gene_synonym="si:ch211-94n14.3" /note="polymerase (RNA) II (DNA directed) polypeptide M; polymerase (RNA) II subunit M" /codon_start=1 /product="protein GRINL1A" /protein_id="NP_001333109.2" /db_xref="GeneID:100003720" /db_xref="ZFIN:ZDB-GENE-160728-95" /translation="MLPSWVARQGEVGDLRNKSKDELLEILSRQEKILSNKRFIQTLPDKGKKIAEFVEKVHLALGHLEEEERKQAGLISVRTEFQSKYQQALAKRSKDNHLDSKLDTVIPSHDKKEANVNTDVVSVQENGDLFGQEEFLTARLQAAETLETAGVNAAASLLKDTELVKAFGRVTFAESNNGSNKDNIKTQPPSKPFLDTKPLKKPHYIEVLEKTEESVNMKKSRFKPNQLIAKSESPSSSQASGSTTPLTAEARKQQDRKHLDDITAAKLPPLHHSPAQLLSLEESAALLQEQTRKQLEMQAKQAAQKLADGLSIRMESYNPEGGP...
AA_position 20
Synonym: si:ch211-94n14.3
NM_001346180.2 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio acetylserotonin O-methyltransferase (asmt), mRNA. (1293 bp)
db_xref="ZFIN:ZDB-GENE-080220-43" /translation="MAEEAELYPKKILEYMEGFLVSKTLFSACELGVFELLQSACLSAGQVSAALSTSVDGTERLLSACVGLQLLNTHTHTDGTVLYSNTEMSNVFLVKSSPKSLYHSIEYSSRTIYLCWHYLSDAVRDGKNQYEKAFGVNSKDLFEALYRSDDEMVKFMHLMNSVWNICGRDVITAFDLTPYKTICDLGGCSGALAKQCVSAYPESSVTIFDLPRVVQNSQKHFMMDQDPRIAFCEGDFFKDELPQADLYILARILHDWTDQRSVELLTKIYQSCRPGGALLLAEALLHEDDSGPLTVQLYSLNMLVQTEGRERKASEYTRLLNAAGFTHVHTHTTGKIYDAVLAIK" misc_feature 67..330 /gene="asmt" /gene_synonym="hiomt; zgc:171885" /note="dimerization domain; Region: dimerization2; pfam16864" /db_xref="CDD:465287" misc_feature 379..1008 /gene="asmt" /gene_synonym="...
AA_position 238
Synonym: hiomt; zgc:171885
NM_001114909.2 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio leucine zipper protein 2 (luzp2), transcript variant 1, mRNA. (1542 bp)
protein_id="NP_001108187.1" /db_xref="GeneID:100137118" /db_xref="ZFIN:ZDB-GENE-060503-278" /translation="MKFIGAVYLLFLLPALSFNSSYEGLEKKLKEVFTERTGILRHLSKTSKELDSIKGNLQSLKNEDAVPKKDVQRILELSHKQRDEMKSLQAALQKQLDDAAERAEKQQATIKFLKMEMEKKTKIIKDLQQENKSLKNKLLSGNKLCDIHAEESKKIQAQLKELRYGKKDLIFKGQQLMDLENKLKVAKDELEKAALDKESQLKALKDTVHICFSSVLHSQTASLHRFPATPTNLLRYSALVNNSRVTFQQPHMKDIPKVPRITTTSKLPVSSAVMRRESTGPKDCQMVKVGSDCSHNQTESSSVMKKTFGHSQSKTPEQNGQGQARTAEESVKTDGELKKTQSDKHN" misc_feature 248..>862 /gene="luzp2" /gene_synonym="si:ch211-243k12.1; si:dkey-239j7.1; si:dkeyp-86e4.1" /note="Septal ring factor EnvC, activator...
AA_position 187
Synonym: si:ch211-243k12.1; si:dkey-239j7.1; si:dkeyp-86e4.1
NM_001114715.1 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio ring finger protein 122 (rnf122), transcript variant X1, mRNA. (3677 bp)
si:ch1073-392o20.1" /codon_start=1 /product="RING finger protein 122 isoform X1" /protein_id="XP_005172552.1" /db_xref="GeneID:100329730" /db_xref="ZFIN:ZDB-GENE-091204-454" /translation="MHPFQWCNGCFCGLGLIYSNKTCTMPSVTFQDLPLNIYMVIFGTGIFVFVLSLIFCCYFISKLRHQAQSERFGYREVVLKGDPKKLNLHGTCAVCLEDFKVKDELGVLPCQHAFHRRCVVKWLEVRCVCPMCNKPLSGSSEQHQSLGTLLDELV" misc_feature 609..746 /gene="rnf122" /gene_synonym="si:ch1073-392o20.1" /note="RING finger (Really Interesting New Gene) domain and U-box domain superfamily; Region: RING_Ubox; cl17238" /db_xref="CDD:473075" misc_feature order...
AA_position 102
Synonym: si:ch1073-392o20.1
XM_005172495.6 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio ring finger protein 122 (rnf122), mRNA. (1585 bp)
gene_synonym="si:ch1073-392o20.1" /codon_start=1 /product="RING finger protein 122" /protein_id="NP_001314745.1" /db_xref="GeneID:100329730" /db_xref="ZFIN:ZDB-GENE-091204-454" /translation="MHPFQWCNGCFCGLGLIYSNKTCTMPSVTFQDLPLNIYMVIFGTGIFVFVLSLIFCCYFISKLRHQAQSERFGYREVVLKGDPKKLNLHGQTCAVCLEDFKVKDELGVLPCQHAFHRRCVVKWLEVRCVCPMCNKPLSGSSEQHQSLGTLLDELV" misc_feature 608..748 /gene="rnf122" /gene_synonym="si:ch1073-392o20.1" /note="RING finger (Really Interesting New Gene) domain and U-box domain superfamily; Region: RING_Ubox; cl17238" /db_xref="CDD:473075" misc_feature order...
AA_position 103
Synonym: si:ch1073-392o20.1
NM_001327816.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio trafficking protein particle complex subunit 6B (trappc6b), mRNA. (954 bp)
complex subunit 6B; trafficking protein particle complex 6b" /codon_start=1 /product="trafficking protein particle complex subunit 6b" /protein_id="NP_001006029.1" /db_xref="GeneID:450008" /db_xref="ZFIN:ZDB-GENE-041010-122" /translation="MADEALFQFLHSEIIQYVNSAETGESENGRCVSKLENMGFRVGQGLIERFTQDTPRFKDELDVMKFICKDFWTSVFKKQIDNLRTNHQGIYVLQDNKFRLLTQLSAGKQYLEHAPKFLAFTCGLVRGALSNIGVKSIVTAEVSVMPACKFQVMIQKM" misc_feature 211..669 /gene="trappc6b" /gene_synonym="zgc:103464" /note="Trs33 subunit of the TRAPP complex; Region: TRAPPC6A_Trs33; cd14944" /db_xref="CDD:271347" misc_feature order...
AA_position 58
Synonym: zgc:103464
NM_001006029.1 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio ring finger protein 24 (rnf24), transcript variant X1, mRNA. (4920 bp)
rnf24" /gene_synonym="zgc:103462" /codon_start=1 /product="RING finger protein 24 isoform X1" /protein_id="XP_005160122.1" /db_xref="GeneID:492480" /db_xref="ZFIN:ZDB-GENE-041114-40" /translation="MIYLPVLSMTSDLQHYSFRMPNIGFQNLPLNIYIVVFGTAIFVFILSLLFCCYLIRLRHQAHKELYAYKQVIQKEKVKELNLHEICAVCLEEFKQKDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQQQSMSEPIAPTQQHLPGVENLV" misc_feature 623..784 /gene="rnf24" /gene_synonym="zgc:103462" /note="RING finger, H2 subclass, found in RING finger protein 24 (RNF24) and similar proteins; Region: RING-H2_RNF24; cd16675" /db_xref="CDD:438337" polyA_site 4920 /gene="rnf24" /...
AA_position 96
Synonym: zgc:103462
XM_005160065.6 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio splicing factor 3a, subunit 3 (sf3a3), mRNA. (2216 bp)
wu:fj94f01; zgc:110227" /note="spliceosome associated protein 61" /codon_start=1 /product="splicing factor 3A subunit 3" /protein_id="NP_001004289.1" /db_xref="GeneID:446168" /db_xref="ZFIN:ZDB-GENE-040908-1" /translation="METILEQQRRYHEEKERLMDAKTKEMLTKKTTLRDQINSDHRVRAMLDRYMEVSANLRDLYEDKDGMRKDELNAISGPNEFAEFYNRLKLIKEFHRKHPNEICVPMSVEFEELMKAKDNPSEEAQNLVEFTDEEGYGRYLDLHDCYLKYINLKGVEKLEYVTYLSTFDQLFDISKDRKNAEYKKYLEMLLEYLQEYTDRVKPLLDQNELYGKILAEFEKKWETGMFPGWPKETSSALTHAGAHLDLSAFSSWEELASLGLDRLKSALMALGLKCGGTLEERAQRLFSTKGKSLESLDPSLFAKNPKAKGPKKDSERNKESAFLEAQIYEYVEILGEQRQLSHENVQRKQARTGEERDEEDEEQPSESESEDEDNEII...
AA_position 69
Synonym: SAP61; SF3a60; wu:fi15a06; wu:fj94f01; zgc:110227
NM_001004289.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio wingless-type MMTV integration site family, member 16 (wnt16), mRNA. (1183 bp)
translation="MDNTGCGIHAVHHLFLIWLSVYPLCSQGSWMWLGITSVGVPEKLGCAHLPLSHKQKELCARKPHLLPSVKEGARLGITECQTQFRHERWNCSTRRDPNVFGYELTSGTKETAFIHAVMAAGLVHAVTRSCSAGNMTECSCDTSLLGSGSPTEGWHWGGCSDDIAFGTSFSRRFIDSAAKNTSTRGEEALLIMKQHNSEAGRQAVAKTMLTDCRCHGVSGSCAVKTCWRTMAAFERVGAYLKDRYETSVHVVDRSKRKVRRKDKEQRHVPITKDELIFFNKSPNYCLEDRRLGVTGTRGRKCNRTSAGPDGCNLLCCGRGYNTHVVRHVERCECKFVWCCYVRCRRCETMNDMHTCK" sig_peptide 113..196 /gene="wnt16" /gene_synonym="zgc:77293" /inference="COORDINATES: ab initio prediction:SignalP:6.0" misc_feature 263..1180 /gene="wnt16" /gene_synonym="zgc:77293" /note="Wnt domain found in protein Wnt-16 and...
AA_position 272
Synonym: zgc:77293
NM_001100046.1 - Danio rerio (zebrafish) - NCBI - UCSC

Data Export:

Maximum 10000 results can be retrieved as Tab-delimited text or JSON format.

Debug Info:

Redirect URI : https://ggrna.dbcls.jp/dr/aa%3aKDEL
lang : en | div : | spe : dr | query_string : aa:KDEL | format : html | download : 

0.000 | 0.000 | search_start;
0.088 | 0.088 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=(aa:KDEL)?source=Danio rerio (zebrafish)?to=0&format=json
0.129 | 0.041 | search_done; http://172.18.8.71:7700/v1/refseq/query?q=(aa:KDEL)?source=Danio rerio (zebrafish)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.135 | 0.005 | cgi_end;

GGRNA ver.2 by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]