LOCUS       XM_068220870             968 bp    mRNA    linear   VRT 08-SEP-2024
DEFINITION  PREDICTED: Danio rerio claudin g (cldng), transcript variant X1,
            mRNA.
ACCESSION   XM_068220870
VERSION     XM_068220870.1
DBLINK      BioProject: PRJNA13922
KEYWORDS    RefSeq.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_007112.7) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_000002035.6-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/15/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..968
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /strain="Tuebingen"
                     /db_xref="taxon:7955"
                     /chromosome="1"
     gene            1..968
                     /gene="cldng"
                     /gene_synonym="cb214; cldn5l; zgc:136312; zgc:152655"
                     /note="claudin g; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 EST, 708 long SRA
                     reads, 155 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 54 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:81586"
                     /db_xref="ZFIN:ZDB-GENE-010328-7"
     misc_feature    1
                     /gene="cldng"
                     /gene_synonym="cb214; cldn5l; zgc:136312; zgc:152655"
                     /experiment="COORDINATES: cap analysis [ECO:0007248]"
                     /note="transcription start site"
     CDS             208..837
                     /gene="cldng"
                     /gene_synonym="cb214; cldn5l; zgc:136312; zgc:152655"
                     /codon_start=1
                     /product="claudin-like protein ZF-A9 isoform X1"
                     /protein_id="XP_068076971.1"
                     /db_xref="GeneID:81586"
                     /db_xref="ZFIN:ZDB-GENE-010328-7"
                     /translation="

MSTGLQLLGTTLGTLGWLGIIISCAIPLWRVTAFIGNNIVTAQTMWEGLWMSCVVQSTGQMQCKVYDSMLALAQDLQASRAILVISAIVGLIAMFASFAGGKCTNCLADNSAKALVATTGGVAFIIAGILGLVPPSWTANTIIRDFYNPLVAEAQKREFGAAIFICWGAAVLLVIGGGLLCSSYPKGRTSSRGRYTPASQNGRERSEYV"

     misc_feature    <334..747
                     /gene="cldng"
                     /gene_synonym="cb214; cldn5l; zgc:136312; zgc:152655"
                     /note="PMP-22/EMP/MP20/Claudin family; Region:
                     PMP22_Claudin; cl21598"
                     /db_xref="CDD:473919"
     polyA_site      968
                     /gene="cldng"
                     /gene_synonym="cb214; cldn5l; zgc:136312; zgc:152655"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

aagaacaacacaggaaggagagttgtgtactggcccgtgaccatgaggacaccatgtgctccagaaagaacttcttccatcaagtcaagaagagcactgctgaagtcattccacactcaacaaagaagaacttcaccaccatttattgtaccaaacaagacttcatccaagactgtattgaactcacagaatggctgagaaatatacatgtctactggcttgcagctccttggaacaacactaggcactcttggctggctgggcataattatatcatgtgcaatccctctatggcgtgtgactgccttcattggaaacaacattgtgactgcacagacgatgtgggaagggctgtggatgagctgtgtggtgcagagtacaggccaaatgcagtgtaaagtgtatgactccatgctggctcttgcccaagatctgcaggcctctcgagctatccttgtcatttctgctattgttggtttaattgccatgtttgcaagttttgctggtggtaaatgtactaattgcctggcggataactccgcaaaggctctggttgctacaacaggaggcgttgccttcataattgcagggatcttgggtttggtgccacctagctggaccgctaatacaatcatcagagacttttacaatcctctcgtagctgaagcacagaagagggagtttggagcagccatcttcatctgctggggggcagcagtgctcctggttattggtggaggtctcctctgcagctcttacccaaaaggaagaacctccagcaggggtcggtatacaccagcttctcaaaatggaagagagcgctcggagtatgtgtgactgaaggatgtctgtttgaagaaattatagatttgttttaggtttttatctatttaaatgtctgtctgagatcgtctttgtaaagcagagatgaagtgatcaattgagctaataaaacacattttattcaa

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