LOCUS       XM_021478798            1770 bp    mRNA    linear   VRT 08-SEP-2024
DEFINITION  PREDICTED: Danio rerio claudin 10c (cldn10c), mRNA.
ACCESSION   XM_021478798
VERSION     XM_021478798.2
DBLINK      BioProject: PRJNA13922
KEYWORDS    RefSeq; corrected model.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_007120.7) and transcript sequence (GDQH01019141.1) annotated
            using gene prediction method: Gnomon, supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 8, 2024 this sequence version replaced XM_021478798.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_000002035.6-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/15/2024
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            assembly gap :: added 405 transcript bases to patch genome assembly
                            gap
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-405               GDQH01019141.1     1589-1993           c
            406-666             CABZ01067559.1     274-534             c
            667-828             CABZ01067558.1     26573-26734         c
            829-910             CABZ01067558.1     26036-26117         c
            911-1018            CABZ01067558.1     25858-25965         c
            1019-1770           CABZ01067558.1     24225-24976         c
FEATURES             Location/Qualifiers
     source          1..1770
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /db_xref="taxon:7955"
                     /chromosome="9"
     gene            1..1770
                     /gene="cldn10c"
                     /note="claudin 10c; The sequence of the model RefSeq
                     transcript was modified relative to its source genomic
                     sequence to represent the inferred CDS: added 405 bases
                     not found in genome assembly; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1 EST,
                     1 long SRA read, 17 Proteins, and 99% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     12 samples with support for all annotated introns"
                     /db_xref="GeneID:110437809"
                     /db_xref="ZFIN:ZDB-GENE-201221-1"
     CDS             435..1142
                     /gene="cldn10c"
                     /codon_start=1
                     /product="claudin-10"
                     /protein_id="XP_021334473.1"
                     /db_xref="GeneID:110437809"
                     /db_xref="ZFIN:ZDB-GENE-201221-1"
                     /translation="

MHYRTLLMHTEMVCFVVCVCGWLLVCSTVPTECWAYSEVHTSVLTSAHYFSNLWKDCLSDSTGVTDCKVFPTFLALRPYIHVCRSFLFTSILLGLFGSILALVGMKCTKLGGSETVNAKVTFAGGINYLTSGLCGMFTYSWYGHRVVSEFMDPGFVGKRYELGPALFVGWGGSALLMLGGLVFSFTAGNQGFQSRTEKQPSPLSGDKQIILSSSSSSSSDKQKSSRAAYGLDAYV"

     misc_feature    456..983
                     /gene="cldn10c"
                     /note="PMP-22/EMP/MP20/Claudin family; Region:
                     PMP22_Claudin; cl21598"
                     /db_xref="CDD:473919"
ORIGIN      

cacacagaaacaccaactgacccagccgggactcaaaccagagaccttgctgtgaggcgacagtgctgaccactgagccaccgtgctgtccctcttaaaagttgataatggtaaagtttgtgagtctgaatgtctgcatcatgctgatgttgataatccagcagacggtaaagtactgaagcggtaaagacacacacacacacacactctctgtaagctgaggcgggctcatggacagatgaacattattttgtgttgcgggtggtgtttgttacatgaaagcgtgctataggggttgttgtcagccgtgtgtgtataacaaacagagagagagagtgtgttgttgacaccacaaacacacacagagcagtgaaggctgctgatctggagtgtgtgtgtgtgtgttctcctcttcagctgctcttcatctcagcatgcattacaggacgctcctgatgcacactgaaatggtgtgttttgtggtgtgtgtgtgcggctggctgctggtctgctccaccgtgcccactgaatgctgggcgtactctgaggtgcacacttcagtgctcacatccgcgcactatttctccaacctgtggaaggactgtctctccgactccaccggcgtcaccgactgcaaagtcttccccacatttctggctctgcgcccctacatccacgtgtgccgatccttcctcttcacatctatactcctgggcttgttcggctccattctggctttggtggggatgaagtgcaccaaactgggaggatctgaaactgtcaacgctaaagtcaccttcgctggaggcatcaattacctgacgtcaggtctgtgcgggatgttcacctacagctggtacggccacagggttgtgtctgagttcatggacccaggttttgtcggaaagaggtatgagctggggccggctctgtttgtgggatggggaggatcggctctgctgatgctgggaggactggtgttcagctttactgcaggcaatcaaggattccagtcaaggacagagaagcagccgtctccactgtcaggagacaagcagatcatcctgagctcttcttcatcttcatcttcagacaagcagaagtccagcagagcagcgtacggactcgacgcttacgtctgagctgatgatgatgatgaggtttaataatgttgtttagtggtggagcaaagcctgcagtaaaaccttcagcagtgggattacaccagtgtaatgcagtataatattgagctactcacagaaaaagtctctagttgcgatagtctccatggtcagtaatgctctgtggtacttttttttcacctggctaaggcttgatctctttcacaactttttattaatagagaatctctgcaatgagcaacacactgaaaacccttcattcagcttaaaaacaccaataacactgggatgatgtgatctcctcagatttttcctctgttattggatgtgtaattatgggatggctttgtaaactgccgggtcataatataagggacaaatctgaaagttaacagcaacatatatagtgacggaccgatctggacttttcatggatgattatgaataattttaattttagttttttttaaagaaacttttcccattctgatacagatctccattcacacctttttaagctaaaaagagagccctagtgaaccccaatctgatcatgtatagattagtgtatgctccatcagctctgtgttaactaaagcattaaaaaacaattaaggctcagagaaat

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