LOCUS       XM_021474236            7859 bp    mRNA    linear   VRT 08-SEP-2024
DEFINITION  PREDICTED: Danio rerio trinucleotide repeat containing adaptor 6Ba
            (tnrc6ba), mRNA.
ACCESSION   XM_021474236
VERSION     XM_021474236.2
DBLINK      BioProject: PRJNA13922
KEYWORDS    RefSeq.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_018395301.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 8, 2024 this sequence version replaced XM_021474236.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_000002035.6-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/15/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7859
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /strain="Tuebingen"
                     /db_xref="taxon:7955"
                     /chromosome="12"
                     /map="unlocalized"
     gene            1..7859
                     /gene="tnrc6ba"
                     /note="trinucleotide repeat containing adaptor 6Ba;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 13 ESTs, 133 long SRA reads, 7 Proteins,
                     and 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 67 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:321362"
                     /db_xref="ZFIN:ZDB-GENE-030131-13"
     misc_feature    1
                     /gene="tnrc6ba"
                     /experiment="COORDINATES: cap analysis [ECO:0007248]"
                     /note="transcription start site"
     CDS             280..6234
                     /gene="tnrc6ba"
                     /codon_start=1
                     /product="trinucleotide repeat-containing gene 6B protein"
                     /protein_id="XP_021329911.2"
                     /db_xref="GeneID:321362"
                     /db_xref="ZFIN:ZDB-GENE-030131-13"
                     /translation="

MEDKKRKKEDKRKRETSQKVAEQKNKVPELTKPPSAQSPAAPNSASPSPGPVPSSTPSAATPAAGTLPQGGNNAKRPAVANGQPSPSTPNSQRYMPREVPPRFRCQQDHKVLLKRGQPPLSSMLLGGGNSGGDSPNETVASASDPSQGPVGPAAPSLPHTSSASSIAASSSSNYANSMWGTSSGSHPLSQGREKVIVDRSDLEEWPSIAAGDGSKSGDAAGTGGTDSGAILNCNASWGERHLQQQAKVVGGGNGRKGVNSGSPSPPTSSGSPNECMQSGSVWASSSHELIGGNAVAAGSLPPISKAAPLPGSSDSSFGVSCGIPGANFTPNANPSAWPALVQEGAGTVATEGGSSSLQSSSLSASNPLSVNQASHQHQLHQMQSRDREPSCGEWGGTALEPGAGPKNTGVTEGADMDSGSTGGGAGSASSSSSTSSSLWRTQPFPANFKTGASRTESWDDGAGGSSLSAEGGKAWGYPGQDDRGDLTGAGAWGTGSGGQTPGVSQGAWGGDHLLGGEWGASSGVGGVSDQGGKDGSSSNSSSSGGSVSIPTTTSSTPSTMTRAWDNQKAVGDVGAGDLSEWGGQGSRGGEGTSSSSGGGNSRSGNQRHGHHRTHKPPDPEVALQDLLSRSDLDPRVLSNTGWGQTQIRQNVAWDLEDGGRAKAPGGANSLSIGASAHAQPYSGPSGSTTTDPSSPSLLQAASLNANLNSNSILGPPAVSSGEGWDNSSSNSSSLHTRGPPPSGVNIQNPSVSQSGGGGGSSAGGQGMPSGGWGGTASSEGQVKGWESEGHEWRERRAGGSSGGWGDFQTQGTPSTGGSGWGDSQEEKGTRSSGWKEMGRVDAGSWGPRGTSDWGEKESKSCSGGWDGKGGGGTSGDSEVGTWGNWDDGTPGGTWGGVGGDMGGKSHQGWGGKMHPSQMPNSQSASQKGPAQQQQQPQSQPQQCQSVDTGAMQGGWGRPAGPSVQSQSSGWNSGPIPQISNGPGETSEPSGWEEPSPQSISRKMEIDDGTSAWGDPSNYNYKSVNLWDKNNAPSGQAQSVSPQQGPPPLQQPPPGRMPTGLGNRDMNIAHSASKGPGIASGWGGRGSPSSPCVDNGTSAWGKPTEAPTGWDDSGKASSWGDPSSNPVKSGSKSMQEGWVEGEGSVSASRNPSWEEEDESGGVWNSAGSQGSSSSYNSGGWGAKKGNKGSLKGAGDSWMNPMSRQFSNMGILGEDAGGRSLDLAPGPPQDKKMEGEKRGMGLNEYNGEMRKGGRGGGAGAVFRSPGSKEVGACEPGPYYDKASGQLFSSGGGMAQSRHQPGVPPINPSVRAQVPHQFLSPQVPGSVLKQMPPPSGGVGGGIFPPQLSPQHIAMLSSIYPPHLQFQLACQLLLQQQPQQQQQQQLLQNQRKFPPNIRQQADPQQLARIMAVLQQQRQQQQHVGGTGGSSKLSPSHLGGSGPKMPMSDPLSHPGLAGSVADIHQKTQGAYSGFGPGMSLSGLELGPMVGGPAGLKDSGGQQSRFKWMMEGHSPAPSPPDSTLHKNGPIAAPLKMRGGSPYSQYEMLGGGEGLGVPPQGPSDHWHRSPGNKMGTKTGTSSWPPEFQPGVPWKGRPNVDTDSDPYMTPGSMLGSSMSSLNDTEHQLLRDNTESNPSLNTLLPSPGAWPYSASESPLTNAHNPAKYTDYKPSWPPEPIGHNKPWKTNRNNSHLPRPPPGLTHQKQPSVSPWTSGGPRVGRGWGGSGGSQENRFGPGSAWSDGGASKGSCWLVLSNLTPQIDGSTLRTICMQHGPLLTFHLGLTQGSALIRYSSRQEAAKAQSALHMCVLGNTTILAEFVSEEEVARYFAHSQAGAAGSGSGGSGAGGVAVSGPAGVAGSSGAGAVGTISAASGDRERAAVGSLTAGGSSNSGGTGPSGSTWQSLDGTGSSSDPASAQGAGLSIFAQWSSNGAGGSNAAGVDPGRAGLWGGMTPGYTGSSLWASPAMEDRHQMNSPAALLPGDLLGGGADSI"

     misc_feature    3556..>3768
                     /gene="tnrc6ba"
                     /note="Argonaute hook; Region: Ago_hook; pfam10427"
                     /db_xref="CDD:463088"
     misc_feature    4678..5496
                     /gene="tnrc6ba"
                     /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg;
                     pfam16608"
                     /db_xref="CDD:465195"
     misc_feature    5500..5748
                     /gene="tnrc6ba"
                     /note="RNA recognition motif (RRM) found in vertebrate
                     trinucleotide repeat-containing gene 6B protein (TNRC6B);
                     Region: RRM_TNRC6B; cd12712"
                     /db_xref="CDD:410111"
     polyA_site      7859
                     /gene="tnrc6ba"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

attcacaccgagcagtaaaatggccgaccgtcaaccaactgactttacagcgctttaaacatagattccgcctctttcgtttacattatcgtatttcatatttaaaacctacagaaggagtgttttcatgactagctcatagatattgatggagtattgtatttcacgttgcctcaaaacccagaaattcgcacttaagcactttagctgtagctagaagactagctgcggtgcatgtaattcctgagaaaggagcaccaggaaagggaacagcagttcatggaagacaagaaaaggaaaaaggaagataaaaggaaacgggaaacctcgcagaaggttgcagagcaaaaaaataaagtgccagaattgaccaagcctccatctgcacagtctcctgccgcccccaactcagcttcccccagccctggccccgtcccctcttcaaccccatccgctgccaccccggctgctggcaccctccctcagggtgggaacaatgctaagcggccggcggtggccaacggacagccctcccccagcacaccgaattctcagcgctacatgccccgtgaagtgccccctcgattccgttgccagcaggaccataaagtgctactgaagaggggccagccaccactgtcctccatgctgctggggggaggcaacagcgggggagacagccccaatgaaacagtggcttctgcctcagatccaagccagggccctgtgggtccagctgctccctcactgccccatacgtcatccgcctcatcaatcgctgcttcttcttcttcaaattatgcaaattccatgtgggggaccagctctggcagccatcccctctctcagggcagggaaaaggtgatagtggaccggtcagacctggaggaatggcccagtattgctgctggggatggatcaaagtcaggggatgcagcaggtacaggaggtacagacagtggtgcgattctgaactgcaatgcctcgtggggtgagaggcatctccagcagcaagcgaaagttgtgggaggagggaacggaaggaaaggagtcaattctggcagtccctctccgcccacatcctctggatcacccaatgaatgtatgcagtctggtagtgtttgggcttcatcctcccatgaactcataggggggaatgcagtagcagcaggctcattgccccccatatccaaagctgcccctctcccagggagctctgatagctcctttggtgtcagctgtgggattccaggtgccaattttacccctaatgccaatccctctgcttggccagccctagtacaggaaggggctgggacagttgcaacagagggtggctcctcttccctccaaagctcatctttgtctgccagcaaccctctttctgtgaatcaagcctctcatcagcaccaacttcaccaaatgcaatccagagacagagagccatcctgtggagaatggggtggcacagcactggaaccaggagcaggaccaaaaaacactggggtgacagagggggctgatatggactctggaagcacaggtggaggagcaggctctgcttcgtcttcctcctccaccagctcatcattgtggagaactcagcctttccctgcaaacttcaaaacgggtgcctcaaggactgaatcttgggatgatggagcaggagggagctccttgtctgctgaaggtgggaaggcatggggatatcccggccaggacgatcgaggagatttgacgggggcaggtgcctggggaacaggaagtgggggtcagacccccggggtatctcagggagcgtggggtggggaccatttgttgggtggggaatggggggcatccagtggtgttggaggtgtcagtgatcaaggtgggaaagacggctcaagcagtaacagcagcagtagtggtggtagtgtcagcatcccgacgacaacctcctccacaccttcaactatgacaagagcttgggacaatcagaaagcagttggggatgtgggagcaggagatttgagtgagtggggaggccagggtagcagaggtggggaaggtacctcatcctccagtggtggaggaaactccagaagtggcaatcagcgccatggccaccaccgcactcataagcctcctgaccctgaagtggccttacaggatctgcttagccggtcggatctggaccccagagtgctgtccaatactggttggggtcagacacaaatccgtcagaatgtggcatgggatttggaagatggaggcagagcaaaagcacctggtggtgcaaattctttgtctattggtgcatctgctcatgcccagccatactctggtcctagtgggagcacaactactgatccatcttccccctctctgctccaagctgcatctctaaatgccaacttaaactcaaactccatccttggaccacccgcagtttcatctggtgaaggttgggacaacagtagtagcaacagcagttctttgcatacccgaggccctccaccctcaggtgtcaatatccaaaaccctagcgtctcacaatctggaggtggaggaggtagctcagctggtgggcagggcatgccatctgggggttggggagggactgcatcatcagaaggccaagtaaagggctgggaaagcgagggacatgagtggcgagaacggcgagcaggaggttcgtcaggtgggtggggagatttccaaacacagggtactccatcaacaggaggaagtggctggggagatagtcaggaggagaaaggaacaagatcaagtggatggaaagaaatggggagggtggatgcaggcagctggggaccgagaggtaccagcgactggggagaaaaagagtctaaatcgtgtagtggggggtgggatggaaagggtggtggaggtactagtggagactcagaagtgggtacatggggtaattgggatgatggaactcctggagggacatggggaggggtgggtggagacatgggtggaaaatctcaccaaggttggggtgggaagatgcacccttcacaaatgccaaacagccaatcagcctcacagaaaggcccggcacagcagcagcagcaaccacaatcacagcctcagcagtgtcagtcagtggacacaggggccatgcaagggggctggggaagaccagcaggtccttcagtccagagccaaagttcagggtggaattcagggcctataccccaaatttccaatggccctggagagacttcagagcccagcggttgggaggagccttctccacagtccatcagcaggaaaatggaaattgatgatggaacatctgcttggggtgaccccagcaactacaactacaaaagtgtcaacttgtgggataaaaacaatgccccatctggccaggcacaatcagtgtcccctcagcagggccccccacccctgcaacagccgccaccaggaagaatgccaacaggtcttgggaatagggacatgaacattgcacattcagcaagcaaggggccaggaatagcttctgggtggggaggtcgtggctctccttccagtccttgtgtggacaatggtacttcagcctggggtaaacctactgaagctcccactggttgggatgacagtggcaaggcctcaagttggggggatccctcatccaatccagtgaagtctggttcaaagtctatgcaagaaggttgggtagaaggagagggttcagtcagtgcttcgcgtaaccctagctgggaggaggaggatgagagtggtggtgtttggaatagtgctggttcccaaggcagcagctcttcatataattctggaggctggggagccaaaaagggcaacaagggctccttgaagggtgcaggagattcttggatgaacccaatgtcaagacagttttcaaatatgggaattttgggagaggacgcaggtggccgttccttggatttggcccctggtcctccacaggacaaaaagatggaaggagagaagcgtggcatgggcttaaacgagtacaatggagagatgcgtaaaggaggtcgtggaggtggggcaggagcagtcttccgttcacctggttccaaagaggtgggagcttgtgaacctgggccttactatgacaaggcaagtggtcagttgtttagtagcggaggagggatggcacagtcaaggcaccaaccaggggtgccacccatcaacccatcagtgcgagcacaagtgcctcatcagttcctgtcacctcaggtgccaggctctgtgctgaaacagatgcctcctcccagtggaggtgttgggggaggcatctttcctccacagctttcccctcagcacattgccatgctcagcagcatctacccaccacatcttcagttccagctggcctgtcagctcctactgcaacagcaaccgcagcaacaacagcagcagcagctgttacagaaccagcgcaagttccccccaaacatacgacaacaagcagacccccaacagctggccagaatcatggctgttcttcagcagcaaagacaacagcagcagcatgtgggaggtacagggggcagctccaaactctctccttctcatcttggaggaagtggcccaaagatgccaatgtccgaccccctttcacaccctggcttggcaggatctgttgcggacatacatcagaaaacacaaggagcttactctgggtttggtcctggaatgagtctctctggtctggaattgggtcccatggttggtgggccagctgggctgaaagacagtggggggcagcagtctcgtttcaaatggatgatggaaggccattctccagcaccttcacctcctgatagcactcttcataaaaatggtcccattgctgctcctcttaaaatgagaggtggttccccgtattcccagtacgagatgctaggaggtggtgagggtttaggtgttcctccacaggggccatcagatcactggcacagaagtcctggaaacaaaatgggcaccaaaactggcacatcaagctggcctccagagtttcaacctggagtgccttggaaaggacgtccgaatgtggacactgactctgatccctacatgacccctggaagtatgttgggttcatcgatgtcaagcctcaatgacactgagcatcaactgctaagagacaacacagaatcaaatccctccctcaacaccttgctgccttcacctggtgcctggccctacagtgcctcagagagccccctaaccaatgcacacaatccagctaagtacacagactacaagcccagctggccacctgagccaatagggcacaacaagccttggaagaccaatcgcaacaactctcatctgccacgcccacctcctggactgacccatcagaagcagccttcagtttctccctggacgagtggaggcccacgagtgggtagaggatggggcggctctggaggcagccaagaaaacagatttgggcctggttctgcgtggagtgatggaggagcctctaaggggagctgctggctggttttgagtaatcttacccctcagattgatggctccactttgaggactatctgtatgcagcatggaccgcttttgacctttcacctcggtttgacccaaggtagtgctctaattcgctacagctctcgccaagaagcagccaaagcccagagcgcacttcacatgtgtgttttaggtaacaccacaatcctggccgagttcgtaagcgaagaggaggtcgctcgctattttgcacattcccaggccggagcagctggaagcggcagcggagggagcggggccggcggtgtggccgtctcagggccggcaggtgtggcgggatcatcaggggctggagccgtgggtacaatcagtgctgcgagtggtgaccgagaacgtgccgcagtaggaagtctaacagcaggaggaagcagcaacagtggtggaaccggcccctcaggctctacgtggcagagtttggatggtacgggcagctcgtctgacccagcctcagcacagggagcaggcctgagcattttcgcccagtggagcagcaacggtgctggtggcagcaatgcagcgggcgttgatcccggaagagccgggctgtggggcggcatgactccaggctacacaggcagcagtctgtgggcttcaccagccatggaagatcggcatcagatgaacagtcctgccgcgctgctacccggagacctgctaggaggaggtgcagactcaatctgactgatgcagacacttacagacaaataaaaacacacacgcacacacatgacagatatataaatataaccgttatgttatctcaaacacacgcaggaacacattaatacgaatacaggcggtttatgtatatggcctctgcaactcagacagccacataacgcataaatatacaacaaaatatttagtatacattcgtaacacctatgtagaccagattcagtgataagcactcaaacagcagatgccaggtaaacacttaaggagcagatccactgcattaccaaacctagcaaaacgcattaagatgaaattgttaatgacactggttacaaatgtacacacactgttattattattattaatattattattttttacctgagcagtgttttaagctcctcgtaaatctaatgttggtaggagcgcagaggagcagtgtgtggacataaggcagtactgatagacacgcgcacacacatatagatacacacacacacacacactcatttcttcttattcttaaatgaagacttcagcaagacttgaacaggacatgcaaacagttggacttaaatactgactcaactggatgaatcctaaaccttgaggtcataaagatcacactcgcatactgagacgctctcactcaggcgtgcactgtaaaggaaaaagcagacaaaaaacaaaacaaaggacaaaaatatgcatcatacaatgttcgttgaacgctcgcgttgttacggctccatttccatgcagacttaaattactcaaacactgttctgatgtctgacaaactgtaacttctcgttgtcttttttatttttgttttttggtttgttttaaatgatggtgaaatccagaatttgttttttttccaaaaaaaaaaaaaaaaaacgctgacctcggttttttttttctttcttcttaatcgagtatgttctcataatgacgatcacttggatgttacttagctgtacaaggtgccctttctgcctgtgcgtgcatgagtgaagtcccaggtgatggaggcgacgttcctagtgttttgcgaggcatcgatgaatgtgtggcagccagagattaacaagcgtggtgtatttacaaagatcagtgctggattagggaggtgagtaaatgtatgagtgacagctttatttcaggtgtttgatgtctatgtgtgcatgatatgtatgcagctgtggctgtgagtgtgtgtgtgagagtgagcgagtgtgtgtagacagcaagttcaagaacattggcactaatgaatatttcttaagttgtggttttagcagccttttctgttttatatattgtctgaattgcaataattataataaagaaaaaaagatttttttagaagatgcaaccaactgaaggcattcatactgaaacatgaaacatgccaaaccttattgtaccaagctgagctggatatatgggtgttttaggaacacttaaaaagtaccagttgtttatttttgttgttgtgtaccattataaattaaggcgggctttatcactcgtgttcaggtttttttttctgtttgtttgtttctgattttacaaaagaaattaatttaaaaaagaacaagacaattaataaaggttgaatttaa

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