LOCUS       XM_021473407            2573 bp    mRNA    linear   VRT 08-SEP-2024
DEFINITION  PREDICTED: Danio rerio general transcription factor IIIC,
            polypeptide 4 (gtf3c4), mRNA.
ACCESSION   XM_021473407
VERSION     XM_021473407.2
DBLINK      BioProject: PRJNA13922
KEYWORDS    RefSeq.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_018395085.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 8, 2024 this sequence version replaced XM_021473407.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_000002035.6-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/15/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2573
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /strain="Tuebingen"
                     /db_xref="taxon:7955"
                     /chromosome="21"
                     /map="unlocalized"
     gene            1..2573
                     /gene="gtf3c4"
                     /note="general transcription factor IIIC, polypeptide 4;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 10 ESTs, 77 long SRA reads, 9 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 27 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:568510"
                     /db_xref="ZFIN:ZDB-GENE-041008-147"
     misc_feature    1
                     /gene="gtf3c4"
                     /experiment="COORDINATES: cap analysis [ECO:0007248]"
                     /note="transcription start site"
     CDS             12..2324
                     /gene="gtf3c4"
                     /codon_start=1
                     /product="general transcription factor 3C polypeptide 4"
                     /protein_id="XP_021329082.1"
                     /db_xref="GeneID:568510"
                     /db_xref="ZFIN:ZDB-GENE-041008-147"
                     /translation="

MAALRSNSSSEKAGTASEAPSGPEDDFWAGQGPIVLRDPAIKLLSPVSGVEPLSWAEDHRLAACNTNSVSLIELVCDIHSLSQNLVLHRTHIPVPTTTCELKVGSEKDVRAVKESFANSKDPVVSQMIMIDRVINPQCGPLHGVKYTSWSPLGCDKLGRCLLAFLTLDNRLTIHSSHLQLQWTLLLDLTELYGEMLKTRKYSAQNDGTPPVSFKDFDELQRRFRMQTPVRMEWSSLCSMQQVQSDNAHKDINTVLLAVLMENGDVVVWQFSLPLNGKESVVSCSTIKSGVSSPSALTWWQYEHSGRKMSGLIIGSSVGPVKILPVNIKAVKGYFTLRQPVVLWQESDQIPVHNIKCITLFHPHQKCNCSLVVAARGPYIFWCLLLISKAGLNVHNSHITGLHSTPIISMTACHNNGTVLTCSLDGKVKKLTTVFTDLAVEFKQEEIVLPEGVAGRRIHGISISPNSAYLAVLSNEGMNNGFHPVALNYQVQFITFKTPDEAAAKMLDAHSLFRNSDLLDLLRWRILKDKSIPSAYENNLEEKLQTSGSTYLWRLKLFFLRTLHKSMQKTPSEALWQPRRRSGQSLVGDGDEGGGGDEDEMMEDRQGDAEIREREERMKEIGSRIEAVESHLIRENMKKVLGEVYLHTCVTQNTRVPTKGVCDFLTNDPANEDRAAKVLIGHIMNKMNKQTFPEYCALCKEILPFTDCKRAECKNGHRWLRCALSYQACQGVTYRRCLLQDSIASVAEPEDSDWIKKILQGPCIFCDSPFY"

     misc_feature    147..713
                     /gene="gtf3c4"
                     /note="Transcription factor IIIC subunit delta N-term;
                     Region: TFIIIC_delta; pfam12657"
                     /db_xref="CDD:463658"
     misc_feature    744..2015
                     /gene="gtf3c4"
                     /note="Domain of unknown function (DUF5921); Region:
                     DUF5921; pfam19336"
                     /db_xref="CDD:466046"
     misc_feature    2088..2306
                     /gene="gtf3c4"
                     /note="Putative zinc-finger of transcription factor IIIC
                     complex; Region: zf-TFIIIC; pfam12660"
                     /db_xref="CDD:372246"
     polyA_site      2573
                     /gene="gtf3c4"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

atacagaaaaaatggcggcgttacgctcaaacagttcttcagagaaagcagggaccgcgtctgaagccccgtcaggaccggaggatgatttttgggcgggacagggaccaatagtgctgcgggatcctgcgattaaattgttgagtccggttagcggtgtggagccgctgtcgtgggcagaagatcacagactggcggcctgcaacacgaacagcgtgtctctgattgagctggtgtgtgacatacacagtctcagtcaaaacctggtgctgcatcgcactcacatccccgtcccgaccaccacatgtgaactcaaggtgggctcagaaaaagatgtgagggctgttaaagaaagctttgccaatagtaaagacccagtagtaagccaaatgatcatgatagacagagtcatcaatcctcaatgtggacctctccatggcgtcaagtacactagttggtcaccgttaggctgtgacaaactcggccgctgccttcttgctttcctaacacttgacaatcgtctcacaatccacagcagtcacttgcaactgcagtggacgctactgctggaccttacagaactatatggcgaaatgttaaaaaccaggaaatactccgctcagaatgatggcacaccaccggtctcctttaaagacttcgatgaactgcagcgtcggtttcgtatgcagacaccagtgcgcatggagtggtccagtttgtgcagtatgcagcaagttcagagcgataacgctcataaagatatcaacacagttcttctagctgtactcatggagaatggagacgtggtggtgtggcagttcagcttgcccctaaacggaaaggaatcagtggtgtcatgcagcaccatcaaatctggtgtgtcgtcaccaagcgcgctcacctggtggcaatatgagcacagtgggcggaaaatgagcggactgatcatagggagctccgtaggacctgtaaagatccttccagtcaacattaaggcagtgaagggttacttcaccctcaggcagcctgtggttttgtggcaggagagcgaccagattcctgtccacaacatcaaatgcatcacactcttccatccgcaccagaaatgcaactgcagtttagtggttgcggcacgtggtccgtatatcttctggtgcttactgctgatctccaaagctggtctgaatgttcacaattcccacatcacgggtcttcattccacccctatcatatccatgacggcttgccacaataatgggactgttttaacatgctcactagatgggaaggttaagaagctaacgactgttttcacagacctagctgtcgagttcaagcaagaagagattgttctgcctgaaggagtcgcgggtcgacggatacacggtatatcaatcagtccaaacagtgcctacttggctgttctctccaatgagggtatgaacaatggcttccatcctgtcgctctcaactaccaggtacagttcatcacctttaagactccagatgaagcagcagctaagatgcttgatgctcacagtctctttagaaactctgatttgctggatttgttacgatggcggatactaaaagacaaaagcatcccttcggcctacgagaataatctagaagagaagctgcaaacctcagggtccacttacctgtggcgtcttaagcttttctttctcagaacgctccacaagtccatgcagaaaactccttcagaggctctgtggcagccaaggcgaagaagtggtcagagtttagttggtgatggtgatgaagggggtggaggtgatgaagatgagatgatggaggacagacagggggatgcagaaattagggaaagagaggagagaatgaaagagattggcagcaggatcgaagctgtggagtcccatctgatccgggagaacatgaagaaggtgctgggcgaggtgtatctgcacacctgtgtcactcaaaacacacgtgtacccactaaaggtgtgtgtgacttcctcacaaatgaccctgctaatgaagacagggcagccaaggtgctgataggtcatatcatgaataagatgaataaacagacatttccagagtattgcgctctctgtaaagaaattctgcccttcaccgactgcaagcgggcagagtgcaagaatggacacaggtggctcaggtgtgcgctgtcatatcaggcctgtcagggtgtgacataccgccgctgtctattgcaggacagtattgcctcagtagcagagcctgaggattcagactggatcaagaaaatcctccaaggtccctgcatcttctgcgattctcctttctactgaagcctcgggactaaataaaagtctccacgactgactactggatcacttaagcgggctacataaatgactaaaacgcctttctttacttgaaagagaaacatttgaaagccataaagtattctttaattattttgtaatataagacattcgggagatttttcctctcaacagatctttattttaaagccaaaaaagggtctaatttttatacaatgaaaactgtatatgttaataaattattccactgta

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