2024-11-27 13:47:35, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS XM_017354872 2516 bp mRNA linear VRT 08-SEP-2024 DEFINITION PREDICTED: Danio rerio GTPase IMAP family member 8 (LOC108179126), transcript variant X1, mRNA. ACCESSION XM_017354872 VERSION XM_017354872.3 DBLINK BioProject: PRJNA13922 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007114.7) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Sep 8, 2024 this sequence version replaced XM_017354872.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_000002035.6-RS_2024_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/15/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2516 /organism="Danio rerio" /mol_type="mRNA" /strain="Tuebingen" /db_xref="taxon:7955" /chromosome="3" gene 1..2516 /gene="LOC108179126" /note="GTPase IMAP family member 8; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns" /db_xref="GeneID:108179126" CDS 152..2422 /gene="LOC108179126" /codon_start=1 /product="GTPase IMAP family member 8" /protein_id="XP_017210361.3" /db_xref="GeneID:108179126" /translation="
MRCFKEMFFCKCCRGAREEHDIIEGDKLLQDNDERTSSLQKRVDALKMREMTAGLNVVLLGKTGAGKSSSGNTILGRQAFITQKSVAQDVTVESGSFGELPVSVYDTPGLSDIEMSEEEIRQMINEKILQICSSGLCVFLLVIKADRFTEEDRKTVEKIEKILGENNQNNTWILFTRGDKLEGENMTIEKFIEETEELKTLVQKYEDRYHLFNNNKMKKEEEEEGGPSEQVKILFNKILKPYLDTMAGEKIWQQNTLKRKIPANIGAVSRVSGLPSRRIVLLGKSGVGKSAVGNTILGQKEFTSVMSTNSVTRVCSAAQSTVSGRSVSVVDTPGFFDTKMKPEELMMEIARSVYISSPGPHAFLIVFHVNTRFTEQEEQIPQMIELMFGEEVLKYSIILFTHGDLLDGESVEKLIEENFALRSLVQQCGGRYHVFNNKVNNREQVEDLQQKIDSMIQQNGGGHYTNQMYEDAQIFRQEEEEERKLQEEKQIQEEIEREIKETEERIKAEMEAENLKAERLSEEEQRRREKQRQEEIERVKKNTEERVRKEIKAKKETEERIRAENKAKLNEESGFLNFFSKYKHHFATAGHVVGGIAIGAAVLSGVGVGAAAGAGLAAFCAGVGSVSVAGAAVGGVVGGVVGGVAASKYEEEIKWKKRRREEEEREQQVDKKIQEEIERAIKEIDERFREEMVAKNLKAEKQSEEEQRRQEKQRLEEIKRVREKTEERIRAEIEAKKQRDGVRKNREDERNKNKRS"
ORIGIN
ctcagacagtgccacctgctgttgggtttgaggaaactgcaggtccagaaagccaactgcacgctcagaccaagtagcaacatcagacacgtgaaattaaaagcagtgaatacaaccatctgaagctcacattcacacaaatctcaaagagatgagatgtttcaaagagatgtttttctgtaagtgctgcagaggagccagagaagagcacgacattatagaaggagacaaactgcttcaagacaatgatgagaggacaagctcactccaaaaaagggttgatgcattgaaaatgagagaaatgaccgccggattgaacgtggtcctgctgggaaaaacaggagccggaaaaagctcatcaggaaacacaatcctgggtcgacaagctttcatcacacagaaaagtgtcgcacaagacgtcactgtggagtctggatcattcggtgaactaccagtctctgtttacgacactccaggattatcagatatagagatgagtgaagaagagattcggcagatgatcaatgagaagatcctccaaatatgttcatcaggtctgtgtgtgtttctgctggtcatcaaagcagacagattcactgaagaagacagaaaaactgtggagaagattgagaagatcctgggagaaaacaaccagaacaacacctggattctgttcaccagaggagacaaactggagggagaaaacatgacgatagagaagttcatagaggagactgaagaactgaagacactcgtgcagaaatatgaggacagataccatctgttcaacaacaacaagatgaagaaggaggaagaggaggaggggggaccaagtgaacaagtaaagatactgttcaataaaatactgaagccttacctcgacacaatggcaggagaaaagatatggcagcagaatacactgaagagaaaaataccagcaaatattggagcagtctctcgtgtctccggtctcccctccagacggattgttcttctcggtaaatctggtgttggtaaaagtgcagttggaaacacaatcctgggacagaaagagtttacatctgtgatgagcacaaattcagtaacccgcgtttgttcagcagctcagtccacagtttcaggcagatctgtgtctgtagtcgacactcctggattctttgacacaaagatgaaacctgaagagttaatgatggagatcgccagaagtgtgtatatctccagtcctggacctcacgctttcctcattgtgtttcatgtgaacacgagattcactgaacaggaggaacagattcctcagatgattgagctgatgtttggtgaagaagtgttgaaatactccatcattctcttcactcatggagatctgctggatggcgagtcagtagagaagctgatagaggagaactttgccttaagatctctagtccagcagtgtggaggcagatatcatgtgttcaacaataaagtgaataacagagagcaggtggaggatctacagcagaagattgactcaatgatacagcagaatggaggaggacactacactaaccagatgtatgaagatgctcagatattcagacaagaggaagaagaggagagaaaactacaagaggagaaacaaatacaagaggagattgagagagagataaaggagactgaggagagaatcaaagcagaaatggaagctgaaaatcttaaagcagagagactgagtgaggaagaacagagaagacgagagaaacaaagacaagaggagatagagagagtgaagaagaatactgaggagagggttagaaaagaaattaaagctaaaaaggagacagaagagagaatcagagcagagaataaggctaaattaaatgaggagagtggctttttaaactttttttccaaatacaaacatcattttgccacggcaggacatgttgttggaggaattgctatcggagctgcagttttatctggagttggagttggagctgctgctggagctggtttagcagctttttgtgctggagtaggaagtgtttcagttgctggagctgctgttggaggtgttgttggaggtgttgttggaggtgttgctgctagcaaatatgaggaagaaataaagtggaagaagagaagaagagaagaagaagagagagaacaacaagttgacaaaaaaatacaagaagagattgagagagcaataaaggagattgatgagagattcagagaagaaatggtagctaaaaatcttaaagcagagaaacagagtgaggaagaacagagaagacaagagaaacaaagactagaggagattaagagagtaagagaaaagacagaggagagaatcagagcagaaattgaagctaaaaagcagagagacggagtaaggaagaacagagaagacgagagaaacaaaaacaagaggagttagagtgataaaagagacagaggagagagtcagagcagaaaatgaggctaaattaaacgagaagagtggatttttttatttttttaagagaggaaga
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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