LOCUS       XM_005161279            3121 bp    mRNA    linear   VRT 12-MAY-2025
DEFINITION  PREDICTED: Danio rerio claudin 28 (cldn28), mRNA.
ACCESSION   XM_005161279
VERSION     XM_005161279.6
DBLINK      BioProject: PRJNA1248012
KEYWORDS    RefSeq.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_133196) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On May 12, 2025 this sequence version replaced XM_005161279.5.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_049306965.1-RS_2025_04
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 04/11/2025
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3121
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /strain="Tuebingen"
                     /isolation_source="Zebrafish international resource
                     center"
                     /db_xref="taxon:7955"
                     /chromosome="21"
                     /sex="male"
                     /tissue_type="Fibroblasts and whole tissue"
                     /dev_stage="adult"
                     /ecotype="United States"
                     /geo_loc_name="USA"
                     /collection_date="2022-07-19"
                     /collected_by="National Human Genome Research Institute"
                     /genotype="Double heterozygous"
     gene            1..3121
                     /gene="cldn28"
                     /note="claudin 28; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 268 long SRA reads, 93
                     Proteins"
                     /db_xref="GeneID:796314"
                     /db_xref="ZFIN:ZDB-GENE-201223-1"
     misc_feature    1
                     /gene="cldn28"
                     /experiment="COORDINATES: cap analysis [ECO:0007248]"
                     /note="transcription start site"
     CDS             93..662
                     /gene="cldn28"
                     /codon_start=1
                     /product="claudin-like protein ZF-A89"
                     /protein_id="XP_005161336.1"
                     /db_xref="GeneID:796314"
                     /db_xref="ZFIN:ZDB-GENE-201223-1"
                     /translation="

MRTRQFVAAFLALVGLCGTILICALPMWKVSAFVGANIVTAQVYWQGLWMNCVLQSTGHMQCMAYYSVLALTQDLQAARGLICASIGVSAIAFGMMVVGANCTRFYREDQLKKTNIGISAGALYIVGGVMCLVAVCWQTSIIVMNFYNPQVIAGTQGELGACIYIGWVAGFLLIIGGGLLLSTYSNRCC"

     misc_feature    105..599
                     /gene="cldn28"
                     /note="PMP-22/EMP/MP20/Claudin family; Region:
                     PMP22_Claudin; cl21598"
                     /db_xref="CDD:473919"
     polyA_site      3121
                     /gene="cldn28"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

agagaattcacattgtaaatagtctttcacttgcacaactaccacattttccttcctttcattgcagatggtttgtcttcgctctatgaaaaatgaggacacgacagttcgtggctgcatttctggctttggttggcctgtgcgggaccatcctgatttgtgccttgcctatgtggaaagtgtcggcctttgtcggagcgaacattgtgactgcacaggtctactggcaaggcttgtggatgaactgcgtcttgcaaagcactggccacatgcagtgcatggcgtattactctgttctggcactgactcaagatctccaggccgctcgtggtttgatttgtgcttctatcggtgtcagtgcaattgcctttggaatgatggttgttggggccaattgtacacggttttacagagaagatcaacttaaaaagaccaacattggaatatcagctggcgcattgtatatagttggaggtgtaatgtgccttgttgctgtctgctggcagacgtctattattgtcatgaacttttataatcctcaagtaatagcagggacacaaggagagctgggagcctgcatctatataggatgggtcgctggatttttgctaattattggcggtggactgcttttaagcacatactccaaccgatgttgttgaccagatttggggttaataagactcaactgactcagtttgacgccggattgtttctatttttccttggaggataaaatgtttttttctggatcccccaattcttcagagctgtttttaagactgtcaaatgtttgtttgtaatactgtgtatcagtacttactcaggcccgtagccagcctactaaaagtaaatctttttacagttattcaaggtttaaatactgtatttttaaacacattttaagcactaatttgtgctggattagcttgttgggtggttatcattaccacatttttcattaccacattttttgatccaacaaaaatacttcctacatttttatcaaagtgcttataatactatttttttgtttacaaaaatgtatgtttattcacaagttgtaacagttttatatgtaatgtattgagattagaatttttagaaatattgaaaaatactgatttttaaatgcttatttattatcatccatcattaaaaacaaacaaaaaaacaaacaagcaacaaaaacttaagaatatgttaaaactagtttttgatgaaaaactttagcctataggttggcccacatgaaatctgcacatgcagaattccacagatttttagcccattattgattctgtttatttacttgtgtaaatgtgattaaatttatatttattcagttttcaaattaattacagtaatattattgaataatatgaaaatattcatatgatttattcacaatacagtttgtaaagtaatattttctgacttttagtagatatatgtgagacttgctttgtttaccaagtaaagtggatcctaattggatttgcattgtaagcattagataaaagtttaaaagctattacttttttattacatatattggtaacgctttctttgacaacccgcaaagtactagttatgatacccctagattaattctgcataaatccacagatttttaagtctgcccagaaatagcaaaaaatctcagcagattctgtctggccctgcctataggccaataactataggtataaattgcctatttaaataataaaaaccttctttcattctttattttattatttattcttcttaaagtcttcttctcttggttattttcacaatttatgatggcatactgtcaaaaattggacaaatgtgctcggtttggagtcaaaacctggactttgtgggaaaggggatgggtctttcaaaccacccaaacctccctggctacttatgccagctgttttgacatattgactcagattaaacacttagctgtagaacggctactagttgcacagaaaaaaccatcagatgtagcacagtatataaataaatacatacatttgttgagaattacatgcaataatattcaataactgtttcaatgaatgtctccactgtaaaaagcgattattggttttactttaaaaatcgagtaaactaatttactcagtataaaattttacacaggttttacttcacacctgttcgactgcactgtcaccaaggttaagcttactgggaaatagggaacagatgccaaatattacaaaaagagagttcacagtgatcatggcgaggatttcagtaacggctagagtcatcttaaaaaactggtaaactccaaagttaaaataatgggacaatataatgactaaaacagcttcctgtgaatgtttactttattaatgaaataacaaggacaaaacacaggtccctgtatcccagtgtgggaagacttttggtcttatgtgacgacgtcttgtaacacaattgaaaatcactcaacaggttttctttataatattgcacttttgttgatagtaagcattgtatgcactctggctttatatgtagtaggcctaccagtgatcatttgtaatatgtgtctgtattattttgtcatgtataccaaaagaaaaaaataataatcaagtaatcaattgtaacttggaacggttaagctgacagtttaactgtataatcatgcacgtaattcatttactttaataggtttatggcaacgggtttactcactttaaaaagtacaatgtaaaaatgattatttagtactgacagcatatgctttaggtcattgtaacttattaagctaagttaataatgttctaacttaatttgataagttatgcaagctgttttaagtcagttcaacataatataggttcaatggactcataatattaatttgattcagcttaaaatcaaattttttaaggcaaccaggattttttttacagtgtaaagttatttagcttgtaaaactgcatcatttatatggtcataaatcagctgatttgattggtgatctagcattaattatatcatactatgtattttctttgtacatctgtgattacatttcttttgcaaaaaagtataaatatattttttgcataaaatagtaaaatcccaa

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