LOCUS       XM_005157696            1850 bp    mRNA    linear   VRT 12-MAY-2025
DEFINITION  PREDICTED: Danio rerio odorant receptor, family 42, subfamily E,
            member 1 (or42e1), transcript variant X1, mRNA.
ACCESSION   XM_005157696
VERSION     XM_005157696.4
DBLINK      BioProject: PRJNA1248012
KEYWORDS    RefSeq.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_133190) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On May 12, 2025 this sequence version replaced XM_005157696.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_049306965.1-RS_2025_04
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 04/11/2025
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1850
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /strain="Tuebingen"
                     /isolation_source="Zebrafish international resource
                     center"
                     /db_xref="taxon:7955"
                     /chromosome="15"
                     /sex="male"
                     /tissue_type="Fibroblasts and whole tissue"
                     /dev_stage="adult"
                     /ecotype="United States"
                     /geo_loc_name="USA"
                     /collection_date="2022-07-19"
                     /collected_by="National Human Genome Research Institute"
                     /genotype="Double heterozygous"
     gene            1..1850
                     /gene="or42e1"
                     /gene_synonym="olfr2.6; or111-1; or15.40; or2.6; orzf1i;
                     ZF1I; ZF1l; zgc:194674; zgc:194699"
                     /note="odorant receptor, family 42, subfamily E, member 1;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 3 mRNAs, 83 long SRA reads, 62 Proteins"
                     /db_xref="GeneID:58116"
                     /db_xref="ZFIN:ZDB-GENE-000329-16"
     CDS             94..1074
                     /gene="or42e1"
                     /gene_synonym="olfr2.6; or111-1; or15.40; or2.6; orzf1i;
                     ZF1I; ZF1l; zgc:194674; zgc:194699"
                     /codon_start=1
                     /product="odorant receptor 111-1 isoform X1"
                     /protein_id="XP_005157753.1"
                     /db_xref="GeneID:58116"
                     /db_xref="ZFIN:ZDB-GENE-000329-16"
                     /translation="

MSSVNASFSKNISIVHPEYFFVIGLTGIGYSSYYYIFLFITYFITVVGNTAVILIIVLDRRLHSAKYIGMFNLALADFGEANALIPNMMKTFLFDSQYIYYNACMANMFFVFLFSTMQSFTLVVMAYDRLIAICLPLRYHSIVNNSNMILIFSAIWAFNSSVVALMVSLIDRLSFCESNMIQSYFCDHGPVYRLACSDISKNKIMAYVISAMYIIAPMVVIVFSYLGIFLALIKITTWEGRLKALKTCVSHLLLVGIFFLPLFCTYLAQLLLSLNPNARVISTSLSYAIPPMLNPIIYVLNTGEIKDLIRKMLKSRSAPIRENISK"

     misc_feature    199..993
                     /gene="or42e1"
                     /gene_synonym="olfr2.6; or111-1; or15.40; or2.6; orzf1i;
                     ZF1I; ZF1l; zgc:194674; zgc:194699"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; Region: 7tm_GPCRs; cl28897"
                     /db_xref="CDD:475119"
     misc_feature    199..267
                     /gene="or42e1"
                     /gene_synonym="olfr2.6; or111-1; or15.40; or2.6; orzf1i;
                     ZF1I; ZF1l; zgc:194674; zgc:194699"
                     /note="TM helix 1 [structural motif]; Region: TM helix 1"
                     /db_xref="CDD:320092"
     misc_feature    292..360
                     /gene="or42e1"
                     /gene_synonym="olfr2.6; or111-1; or15.40; or2.6; orzf1i;
                     ZF1I; ZF1l; zgc:194674; zgc:194699"
                     /note="TM helix 2 [structural motif]; Region: TM helix 2"
                     /db_xref="CDD:320092"
     misc_feature    406..474
                     /gene="or42e1"
                     /gene_synonym="olfr2.6; or111-1; or15.40; or2.6; orzf1i;
                     ZF1I; ZF1l; zgc:194674; zgc:194699"
                     /note="TM helix 3 [structural motif]; Region: TM helix 3"
                     /db_xref="CDD:320092"
     misc_feature    541..591
                     /gene="or42e1"
                     /gene_synonym="olfr2.6; or111-1; or15.40; or2.6; orzf1i;
                     ZF1I; ZF1l; zgc:194674; zgc:194699"
                     /note="TM helix 4 [structural motif]; Region: TM helix 4"
                     /db_xref="CDD:320092"
     misc_feature    700..771
                     /gene="or42e1"
                     /gene_synonym="olfr2.6; or111-1; or15.40; or2.6; orzf1i;
                     ZF1I; ZF1l; zgc:194674; zgc:194699"
                     /note="TM helix 5 [structural motif]; Region: TM helix 5"
                     /db_xref="CDD:320092"
     misc_feature    826..894
                     /gene="or42e1"
                     /gene_synonym="olfr2.6; or111-1; or15.40; or2.6; orzf1i;
                     ZF1I; ZF1l; zgc:194674; zgc:194699"
                     /note="TM helix 6 [structural motif]; Region: TM helix 6"
                     /db_xref="CDD:320092"
     misc_feature    910..993
                     /gene="or42e1"
                     /gene_synonym="olfr2.6; or111-1; or15.40; or2.6; orzf1i;
                     ZF1I; ZF1l; zgc:194674; zgc:194699"
                     /note="TM helix 7 [structural motif]; Region: TM helix 7"
                     /db_xref="CDD:320092"
     polyA_site      1850
                     /gene="or42e1"
                     /gene_synonym="olfr2.6; or111-1; or15.40; or2.6; orzf1i;
                     ZF1I; ZF1l; zgc:194674; zgc:194699"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

actgtcattgctggctctaaaactttggagttattcaaatattatgcaaagttattttaaaagatttttcaaaacacaagacgcaaagctgccatgagttctgtaaatgcaagtttttccaagaatatctccatcgttcatcctgaatactttttcgtcattgggctcacaggtatagggtacagcagttattactatatattcttattcatcacgtatttcataactgtagttgggaatactgcagtcattctcattatagttcttgaccggaggctgcacagtgcaaagtacattggtatgtttaacttggccttggctgactttggggaagctaacgcactgattcctaacatgatgaagacttttctgtttgactctcagtacatctactacaatgcttgtatggcaaatatgttttttgtgttcctctttagtactatgcaaagtttcactcttgttgttatggcgtatgatcgtttaattgcaatttgtttgccattgagatatcatagcattgtcaataattccaatatgattttaattttctcagcaatatgggcttttaattcttctgtggtggccttgatggtgtctttgattgaccgactttcattctgtgaatctaatatgatacagagttatttttgtgatcatggaccagtgtataggttggcatgcagtgacattagcaaaaataagattatggcgtatgtcatttcagctatgtacattatagcaccaatggtcgttattgtcttttcatatctgggcatttttcttgctttaatcaaaatcacaacttgggaaggacgattaaaagcactgaagacctgtgtgtctcacctgttgttagtaggaatttttttcctccccttattctgcacataccttgcccagctcttgctttcactgaatcctaatgccagagtcatcagcacatctctgtcatatgcaattccaccaatgctaaatcctattatttatgttttaaacacaggtgaaattaaggacctaattcgaaaaatgcttaaaagcagatctgcaccgatcagagagaacatttccaaatgaggctgtaaaatttttcattatttaattgggtctgtttgacgctagaaaagtttgttaattatatatcctcataatcaattcaaattctcaaagaaatataatatatgaaactgttctgtgacctttattaatcaagctggtttgcttttgttctattgatattgtgacagtaaatgaagaagtaaaaaacgtgatttaagtgaccaatcattgccatagtatgttgacatattttatacaaccttaaacacatcattcactgtgatttacttgtatttttggttgataaaatcaacttaaaagtgtgattaaaataaatattatttcaaaatgtttttctttttttccataagctaatgttataatgagcatgttggtctccacatttcccattcttctctgtatagtatacataacatgaaagcataatacacacaaatgtaagtttccatttattgtgtctgtttttaaaggtcatcaaaggtcataatgacctctttgatactgaaaggtaataacacacatcaatgtaaagtctcagcctcataatggtcttttactgccctctactggtatcttcaagtaggtgcataatgtttgagtctatgtatcttaacccagacagtgtcatataattattatttcttcaaaatgtctttaaatttggaaaccaatgtttatcctgaaatatgcttgttggtgtaactttaatatgtttaactctaaaattttgtaagaatataactgttgtaaaaataaaagtcttctaatcttta

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