LOCUS       NM_201190               2024 bp    mRNA    linear   VRT 16-SEP-2024
DEFINITION  Danio rerio negative elongation factor complex member C/D (nelfcd),
            mRNA.
ACCESSION   NM_201190
VERSION     NM_201190.1
KEYWORDS    RefSeq.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
REFERENCE   1  (bases 1 to 2024)
  AUTHORS   Cal L, MegIas M, Cerda-Reverter JM, Postlethwait JH, Braasch I and
            Rotllant J.
  TITLE     BAC Recombineering of the Agouti Loci from Spotted Gar and
            Zebrafish Reveals the Evolutionary Ancestry of Dorsal-Ventral
            Pigment Asymmetry in Fish
  JOURNAL   J Exp Zool B Mol Dev Evol 328 (7), 697-708 (2017)
   PUBMED   28544213
REFERENCE   2  (bases 1 to 2024)
  AUTHORS   Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M,
            Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD,
            Ait-Lounis A, Barnes A, Song Y, Eisenman DJ, Eliyahu E, Frolenkov
            GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W and
            Hertzano R.
  TITLE     RFX transcription factors are essential for hearing in mice
  JOURNAL   Nat Commun 6, 8549 (2015)
   PUBMED   26469318
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 2024)
  AUTHORS   Meng S, Ryu S, Zhao B, Zhang DQ, Driever W and McMahon DG.
  TITLE     Targeting retinal dopaminergic neurons in tyrosine
            hydroxylase-driven green fluorescent protein transgenic zebrafish
  JOURNAL   Mol Vis 14, 2475-2483 (2008)
   PUBMED   19112533
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC045357.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC045357.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA3505370,
                                           SAMEA3505378 [ECO:0006172]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..2024
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /strain="AB"
                     /db_xref="taxon:7955"
                     /chromosome="6"
                     /map="6"
     gene            1..2024
                     /gene="nelfcd"
                     /gene_synonym="th1l; zgc:55482"
                     /note="negative elongation factor complex member C/D"
                     /db_xref="GeneID:394165"
                     /db_xref="ZFIN:ZDB-GENE-040426-720"
     exon            1..115
                     /gene="nelfcd"
                     /gene_synonym="th1l; zgc:55482"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    38..40
                     /gene="nelfcd"
                     /gene_synonym="th1l; zgc:55482"
                     /note="upstream in-frame stop codon"
     CDS             59..1798
                     /gene="nelfcd"
                     /gene_synonym="th1l; zgc:55482"
                     /note="TH1-like"
                     /codon_start=1
                     /product="negative elongation factor C/D"
                     /protein_id="NP_957484.1"
                     /db_xref="GeneID:394165"
                     /db_xref="ZFIN:ZDB-GENE-040426-720"
                     /translation="

MDEEYYSHAGEWEAQDGSMEDGYGDAEADGKVQEDCLQKFSSRDYIMEPTVFNTLKSYFQAGGSPEHVIQLLSENYSAVAQTVNLLAEWLIQMGVEPAQVQERVENHLKSLLIKHFDPQKADSIFTVEGETPAWLEQMIAHTTWRDLFYKLAEAHPDCLMLNFTVKLISDAGYQGEITSVSTACQQLEVFSRVLRTSLATLLDGGEQNLEKNLPEFAKMVCHGEHTYLFAQAMMSILAQEEQGGSAMRRIGQEVQKYAHERGHDASQITLALGTAAAYPRACQALGAMLSKGALNPADITVLFKMFSSMDPPPVELIRVPAFLDLFMQSLFKPGAKINQDHKHKYIHILAYAASVVETWKKNKRVNINKDELKSTSKAIETVHNLCCNENKGATELVAGLSTLYQCIRFPVVAMGVLKWVDWTVSEPRYFQLQTDHTPVHLALLDEISTCHQLLHPQVLQLLIKLFETEHSQLDVMEQMELKKTLLDRMVHLLSRGYVLPVVGYIRKCLEKLNTDISLIRYFVTEVLDVIAPPYTSDFVQLFLPILENDSIAGTIRTEGENDPVAEFIAHCKSNFIMMN"

     misc_feature    62..1786
                     /gene="nelfcd"
                     /gene_synonym="th1l; zgc:55482"
                     /note="TH1 protein; Region: TH1; pfam04858"
                     /db_xref="CDD:398497"
     exon            116..228
                     /gene="nelfcd"
                     /gene_synonym="th1l; zgc:55482"
                     /inference="alignment:Splign:2.1.0"
     exon            229..338
                     /gene="nelfcd"
                     /gene_synonym="th1l; zgc:55482"
                     /inference="alignment:Splign:2.1.0"
     exon            339..448
                     /gene="nelfcd"
                     /gene_synonym="th1l; zgc:55482"
                     /inference="alignment:Splign:2.1.0"
     exon            449..556
                     /gene="nelfcd"
                     /gene_synonym="th1l; zgc:55482"
                     /inference="alignment:Splign:2.1.0"
     exon            557..709
                     /gene="nelfcd"
                     /gene_synonym="th1l; zgc:55482"
                     /inference="alignment:Splign:2.1.0"
     exon            710..840
                     /gene="nelfcd"
                     /gene_synonym="th1l; zgc:55482"
                     /inference="alignment:Splign:2.1.0"
     exon            841..1006
                     /gene="nelfcd"
                     /gene_synonym="th1l; zgc:55482"
                     /inference="alignment:Splign:2.1.0"
     exon            1007..1141
                     /gene="nelfcd"
                     /gene_synonym="th1l; zgc:55482"
                     /inference="alignment:Splign:2.1.0"
     exon            1142..1281
                     /gene="nelfcd"
                     /gene_synonym="th1l; zgc:55482"
                     /inference="alignment:Splign:2.1.0"
     exon            1282..1396
                     /gene="nelfcd"
                     /gene_synonym="th1l; zgc:55482"
                     /inference="alignment:Splign:2.1.0"
     exon            1397..1492
                     /gene="nelfcd"
                     /gene_synonym="th1l; zgc:55482"
                     /inference="alignment:Splign:2.1.0"
     exon            1493..1633
                     /gene="nelfcd"
                     /gene_synonym="th1l; zgc:55482"
                     /inference="alignment:Splign:2.1.0"
     exon            1634..1763
                     /gene="nelfcd"
                     /gene_synonym="th1l; zgc:55482"
                     /inference="alignment:Splign:2.1.0"
     exon            1764..2010
                     /gene="nelfcd"
                     /gene_synonym="th1l; zgc:55482"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

gcgaatgttgtaaacagtcattttgttttgtataaaataactacattttccctcctcaatggacgaagaatactacagccatgcaggagaatgggaagcacaagacggcagcatggaggatggatacggggatgctgaggctgacggaaaagttcaggaagattgtttgcagaaattctccagcagagactacatcatggagcccaccgtgtttaacaccctgaaatcgtatttccaggcaggtggttcacctgagcatgtgattcagctcctctcggagaattactctgctgtcgcacagaccgtcaatctgctggccgagtggctcattcaaatgggtgtggagcccgctcaggtgcaggagcgtgtagagaatcatttaaagagtctcttgatcaaacattttgaccctcagaaagcagactctattttcactgtggagggagagacacctgcatggctggagcagatgatagctcacacaacatggagagacctgttctataaactagctgaagctcatccagactgtctgatgcttaactttaccgtcaagttgatttcagatgccggataccaaggagagatcacaagcgtttccacagcctgccaacagctggaggttttctccagagtcctgcgcacctctctggccacactgctggacggaggagaacaaaacctggagaaaaatctgcctgaatttgcgaaaatggtgtgtcacggtgaacacacatacttattcgctcaggccatgatgtccatccttgctcaggaggagcagggcgggtcagcaatgaggcgaatcggacaggaagtacagaagtatgcccatgagaggggacatgatgccagtcagatcacattggcgctgggcacggctgctgcatatccgcgtgcatgccaggctcttggtgccatgctgtccaaaggggctctgaacccagcagacatcacagtcctgttcaagatgttcagcagtatggatccgcctcctgtagagctgattcgagttcctgccttcttagatctgttcatgcagtcactattcaaacccggagctaaaatcaaccaagaccacaagcacaaatacatacacatattagcgtacgccgctagtgttgtggagacatggaaaaagaacaaacgagtgaatataaataaggacgagctcaagtcgacttctaaggccattgagactgttcataatctctgctgcaatgaaaacaaaggagccactgagctagtagcagggctcagcacgttataccagtgcataaggtttccagtggtggccatgggagtgctgaagtgggtggactggacggtgtctgagcctcgttactttcagttacaaactgaccacactcctgtccatctggctctgctggatgagatcagcacctgccatcagcttctccatcctcaggtgctgcagttgctgatcaagctgtttgagaccgaacactcgcagcttgacgtcatggagcagatggagctcaagaagaccctgctggaccgcatggttcacctgttgagtcgaggttatgttcttcctgtcgtcggctacatccgcaaatgtcttgaaaagctcaacactgatatttcactcatcagatattttgttacggaggttctggacgtgatagcgcctccatatacctcagactttgtccagctgtttttgccgatcctagaaaacgacagcatagcaggaacaatccgcacagaaggagaaaacgatcctgtggccgagttcattgctcactgcaaatccaacttcatcatgatgaactaatacattcagaagagttgagtgcttctccatggacggatgatttcagtgtacagagcttttgtgttgaacttcagaaagaaaatattgacaaatgctgaactttgaacatttgttttgaggtcaaaagtcatggaggctttattttgctttaaaatggcttgtgattttgatttttgtacatttgaaatttttattaaacatgtttgtattaaaaaaaaaaaaaaaa

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