LOCUS       NM_200570               1772 bp    mRNA    linear   VRT 02-FEB-2025
DEFINITION  Danio rerio selenium binding protein 1 (selenbp1), mRNA.
ACCESSION   NM_200570
VERSION     NM_200570.1
KEYWORDS    RefSeq.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
REFERENCE   1  (bases 1 to 1772)
  AUTHORS   Fullone,M.R., Maftei,D., Vincenzi,M., Lattanzi,R. and Miele,R.
  TITLE     MRAP2a Binds and Modulates Activity and Localisation of
            Prokineticin Receptor 1 in Zebrafish
  JOURNAL   Int J Mol Sci 25 (14), 7816 (2024)
   PUBMED   39063058
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1772)
  AUTHORS   Li,E., Wang,Y., Li,Q., Li,L. and Wei,L.
  TITLE     Protective Effects of Sal B on Oxidative Stress-Induced Aging by
            Regulating the Keap1/Nrf2 Signaling Pathway in Zebrafish
  JOURNAL   Molecules 26 (17), 5239 (2021)
   PUBMED   34500674
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1772)
  AUTHORS   Feng,S., Wang,S., Wang,Y., Yang,Q., Wang,D. and Li,H.
  TITLE     Identification and expression of carbonic anhydrase 2, myosin
            regulatory light chain 2 and selenium-binding protein 1 in
            zebrafish Danio rerio: Implication for age-related biomarkers
  JOURNAL   Gene Expr Patterns 29, 47-58 (2018)
   PUBMED   29738878
REFERENCE   4  (bases 1 to 1772)
  AUTHORS   Bayes,A., Collins,M.O., Reig-Viader,R., Gou,G., Goulding,D.,
            Izquierdo,A., Choudhary,J.S., Emes,R.D. and Grant,S.G.
  TITLE     Evolution of complexity in the zebrafish synapse proteome
  JOURNAL   Nat Commun 8, 14613 (2017)
   PUBMED   28252024
  REMARK    Publication Status: Online-Only
REFERENCE   5  (bases 1 to 1772)
  AUTHORS   Han,B., Li,W., Chen,Z., Xu,Q., Luo,J., Shi,Y., Li,X., Yan,X. and
            Zhang,J.
  TITLE     Variation of DNA Methylome of Zebrafish Cells under Cold Pressure
  JOURNAL   PLoS One 11 (8), e0160358 (2016)
   PUBMED   27494266
  REMARK    Publication Status: Online-Only
REFERENCE   6  (bases 1 to 1772)
  AUTHORS   Benner,M.J., Settles,M.L., Murdoch,G.K., Hardy,R.W. and
            Robison,B.D.
  TITLE     Sex-specific transcriptional responses of the zebrafish (Danio
            rerio) brain selenoproteome to acute sodium selenite
            supplementation
  JOURNAL   Physiol Genomics 45 (15), 653-666 (2013)
   PUBMED   23737534
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC056590.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC056590.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA4476746 [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1772
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /db_xref="taxon:7955"
                     /chromosome="16"
                     /map="16"
     gene            1..1772
                     /gene="selenbp1"
                     /gene_synonym="MTO; zgc:65844"
                     /note="selenium binding protein 1"
                     /db_xref="GeneID:393542"
                     /db_xref="ZFIN:ZDB-GENE-040426-1436"
     exon            1..179
                     /gene="selenbp1"
                     /gene_synonym="MTO; zgc:65844"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    98..100
                     /gene="selenbp1"
                     /gene_synonym="MTO; zgc:65844"
                     /note="upstream in-frame stop codon"
     CDS             176..1549
                     /gene="selenbp1"
                     /gene_synonym="MTO; zgc:65844"
                     /EC_number="1.8.3.4"
                     /codon_start=1
                     /product="methanethiol oxidase"
                     /protein_id="NP_956864.1"
                     /db_xref="GeneID:393542"
                     /db_xref="ZFIN:ZDB-GENE-040426-1436"
                     /translation="

MASTCSGCGPGYKTPLDAMKGPREEIVYLPCIYRNTDIQKPDYLATVDINPQSPNFCKVIHRLPMPNLKDELHHSGWNACSSCFDDPSKRRNRLILPSLISSRIYVVDVGTDPRAPRLHKTVEPTDLFWKCGLANPHTSHCLGSGQIMISTMGDPSGNGKGGFVLLDGETFEVIGNWEQPGDAAPFGYDFWYQPRHNVMISTEWGAPKALGNGFNPADVKAGHYGQRLHVWDWTTHKRIQTLDLGEEGAIPLEVRFLHDPAAAEGFVGCALQSTVFRFYKTPKGDWAAEKVIKVPSKKVEGWALPDMPGLITDILISLDDRFLYFSNWLHGDIRQYDITDRKNPRMVGQVFLGGSVLKDGPVKVLEDKELDSQPTPRILKGKRLYVTTSLYSAWDKQFYPDLIKEGSVMMQIDVNTDTGGLKLNENFLVDFGAEPEGPALAHELRYPGGDCTSDIWL"

     misc_feature    197..1546
                     /gene="selenbp1"
                     /gene_synonym="MTO; zgc:65844"
                     /note="56kDa selenium binding protein (SBP56); Region:
                     SBP56; pfam05694"
                     /db_xref="CDD:461716"
     exon            180..236
                     /gene="selenbp1"
                     /gene_synonym="MTO; zgc:65844"
                     /inference="alignment:Splign:2.1.0"
     exon            237..349
                     /gene="selenbp1"
                     /gene_synonym="MTO; zgc:65844"
                     /inference="alignment:Splign:2.1.0"
     exon            350..535
                     /gene="selenbp1"
                     /gene_synonym="MTO; zgc:65844"
                     /inference="alignment:Splign:2.1.0"
     exon            536..656
                     /gene="selenbp1"
                     /gene_synonym="MTO; zgc:65844"
                     /inference="alignment:Splign:2.1.0"
     exon            657..839
                     /gene="selenbp1"
                     /gene_synonym="MTO; zgc:65844"
                     /inference="alignment:Splign:2.1.0"
     exon            840..1021
                     /gene="selenbp1"
                     /gene_synonym="MTO; zgc:65844"
                     /inference="alignment:Splign:2.1.0"
     exon            1022..1100
                     /gene="selenbp1"
                     /gene_synonym="MTO; zgc:65844"
                     /inference="alignment:Splign:2.1.0"
     exon            1101..1222
                     /gene="selenbp1"
                     /gene_synonym="MTO; zgc:65844"
                     /inference="alignment:Splign:2.1.0"
     exon            1223..1315
                     /gene="selenbp1"
                     /gene_synonym="MTO; zgc:65844"
                     /inference="alignment:Splign:2.1.0"
     exon            1316..1386
                     /gene="selenbp1"
                     /gene_synonym="MTO; zgc:65844"
                     /inference="alignment:Splign:2.1.0"
     exon            1387..1751
                     /gene="selenbp1"
                     /gene_synonym="MTO; zgc:65844"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

cgaggtggtaatcgacatttgatcttcctatcctttatatccgggtgtgttttttagggattatctcagtcccgcgtggtttagccgcggaaagagttgatttaacaacaacaaaatctgcatcttcttcgccgcgttatttagttttcgccagtggaagcagcagcagcagaatatggcttcaacctgttcaggatgtggtccgggatataaaacccctctggatgcaatgaaaggacctcgagaagagatcgtctacctgccatgcatttaccgaaacacagacatccagaaacctgactaccttgcaactgttgatatcaacccacaatcccccaacttttgcaaggtgattcacaggctgcccatgcccaatctgaaggatgagttgcaccactccggctggaacgcctgcagcagctgttttgacgatccctccaaaaggcgcaatcgactcattctgccgtccctcatctcctccagaatctacgtcgttgatgtaggaacggatcctcgggccccacgacttcacaagacagtggagcccacagatctgttctggaaatgcggtctggcaaaccctcacacttctcattgcttgggcagtggccaaatcatgatcagcaccatgggcgatccctctggcaatgggaagggcggttttgtgttgctggatggcgagacgtttgaagttattggtaactgggagcagccaggagacgcggcaccgtttggttatgacttttggtaccagcctcgccacaacgtcatgatcagcactgaatggggagcgcctaaagcactgggaaatggcttcaaccctgctgacgtcaaagctggtcactatggtcagcggctccacgtctgggactggaccacacacaagcgcattcagactctggatttgggggaagagggcgctattcctctagaggtccgctttctgcatgacccggccgcggctgaggggtttgtgggctgtgcactccagagcaccgtcttccgcttctataagactccgaagggggactgggctgcggagaaagtcatcaaagttcctagtaaaaaagtggaaggttgggctcttcctgacatgccaggtctcattacggacatcctaatctcgttggatgatcgcttcctctactttagtaactggcttcatggagacattcgacagtatgacatcactgacaggaagaatccacgaatggttggtcaggtcttccttgggggcagcgtcttgaaagatggaccggtaaaagtgttggaggacaaagaactggacagccaaccaacaccacgtatactgaagggaaagcggctgtacgtcaccacttctttatacagcgcctgggacaagcagttctaccccgacctcatcaaggagggttcggtcatgatgcagattgacgtgaacacggatacaggaggcctaaaactcaacgagaatttccttgtggatttcggagcggagccagaaggtcctgcactcgcccatgagctccggtatcctggcggagactgtacttctgatatctggctataaagctaggagcaaaccatgtcgttccaagttgaagagttattattcctcagatacatcgtcattattatgatcacgtttagtttttgtgtggagcaaatcatataacacaaactaatttccatcatctttgtgtaacatctattactattatcaaaatgaataccaaactatttgtaaaataaatattttgtattccagtgaaaaaaaaaaaaaaaaaaaaaaa

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