LOCUS       NM_001386269             918 bp    mRNA    linear   VRT 08-SEP-2025
DEFINITION  Danio rerio vimentin-related 1 (vimr1), mRNA.
ACCESSION   NM_001386269 XM_009295062
VERSION     NM_001386269.2
KEYWORDS    RefSeq.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
REFERENCE   1  (bases 1 to 918)
  AUTHORS   Goto,H., Kimmey,S.C., Row,R.H., Matus,D.Q. and Martin,B.L.
  TITLE     FGF and canonical Wnt signaling cooperate to induce paraxial
            mesoderm from tailbud neuromesodermal progenitors through
            regulation of a two-step epithelial to mesenchymal transition
  JOURNAL   Development 144 (8), 1412-1424 (2017)
   PUBMED   28242612
REFERENCE   2  (bases 1 to 918)
  AUTHORS   Pasquier,J., Cabau,C., Nguyen,T., Jouanno,E., Severac,D.,
            Braasch,I., Journot,L., Pontarotti,P., Klopp,C., Postlethwait,J.H.,
            Guiguen,Y. and Bobe,J.
  TITLE     Gene evolution and gene expression after whole genome duplication
            in fish: the PhyloFish database
  JOURNAL   BMC Genomics 17, 368 (2016)
   PUBMED   27189481
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 918)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JBMGRA010000021.1.
            
            On Jun 25, 2025 this sequence version replaced NM_001386269.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: EH600882.1, EH598846.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA3505371, SAMEA3505372
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-379               JBMGRA010000021.1  457957-458335       c
            380-665             JBMGRA010000021.1  456491-456776       c
            666-918             JBMGRA010000021.1  454213-454465       c
FEATURES             Location/Qualifiers
     source          1..918
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /strain="Tuebingen"
                     /db_xref="taxon:7955"
                     /chromosome="21"
                     /map="21"
     gene            1..918
                     /gene="vimr1"
                     /gene_synonym="zmp:0000000719"
                     /note="vimentin-related 1"
                     /db_xref="GeneID:572200"
                     /db_xref="ZFIN:ZDB-GENE-130530-722"
     exon            1..379
                     /gene="vimr1"
                     /gene_synonym="zmp:0000000719"
                     /inference="alignment:Splign:2.1.0"
     CDS             14..724
                     /gene="vimr1"
                     /gene_synonym="zmp:0000000719"
                     /codon_start=1
                     /product="vimentin"
                     /protein_id="NP_001373198.1"
                     /db_xref="GeneID:572200"
                     /db_xref="ZFIN:ZDB-GENE-130530-722"
                     /translation="

MILREFRQDVDNATLQKADLEKRIEQLVAEIEFLKKLHDEEVADLLKQIEDSKVTVELDSDRPDLAAYLRNMRAEIESVAARNVQEAEKWYKGKFDTLKEQANKHEDQMKSKKDEILTFHNQVTELQNQIDGLRARNGALETQLEDMEAAHLEKVSALEAVIAQLENQLCETRMEMGKYMADYQELLHIKLKLDAEIATYRTLLEGEEQRLGIAITEVSESSSVSRSVETHSTTIA"

     misc_feature    <20..643
                     /gene="vimr1"
                     /gene_synonym="zmp:0000000719"
                     /note="Intermediate filament protein; Region: Filament;
                     pfam00038"
                     /db_xref="CDD:459643"
     exon            380..665
                     /gene="vimr1"
                     /gene_synonym="zmp:0000000719"
                     /inference="alignment:Splign:2.1.0"
     exon            666..918
                     /gene="vimr1"
                     /gene_synonym="zmp:0000000719"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

agaggaggccgagatgattctgcgtgagtttcgtcaggatgtggataacgccacgctccagaaagccgatctggagaagcggatcgagcagctggtggcggagatcgagttcctgaagaaactgcatgatgaagaggtggctgaccttctgaagcagatcgaggactccaaggtgacggtggagctggactcggacagacccgatctggctgcatacctgagaaacatgcgtgcagagatcgagagcgttgccgctcgtaatgtccaggaggccgagaagtggtacaagggcaagttcgacacgctgaaggagcaggccaacaaacatgaagaccagatgaagagcaagaaggacgagatcctgaccttccacaaccaggtgacagagctgcagaaccagatcgacggtctgcgggcgcgtaacggtgcgctggagacgcagctggaggacatggaggcggctcacctggagaaggtgtccgctctggaggcagtcattgctcagctggagaaccagctctgcgagaccaggatggagatggggaaatacatggcggactatcaggagctgctgcacatcaagctgaagctggacgctgagatcgccacctacaggacactgctggagggagaagagcagcgcctcggcatcgccatcactgaagtgagcgagagcagctctgtgtcccgcagtgtggagactcacagcaccaccatcgcctgagggagaaacacacaaccgtctgctagaacacaacccgtgtcactgaatgaagctggatttcactgcacacttgtcaactttatgcttcatcatgagtcctcagtttttctgaactgatgaaattagaaacgctagtgtttttgacccgcacgtctttcagagtcttcattaaatgcatgatgcaaaaattacaa

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