LOCUS       NM_001014333            2624 bp    mRNA    linear   VRT 19-OCT-2024
DEFINITION  Danio rerio CUB domain containing protein 1a (cdcp1a), mRNA.
ACCESSION   NM_001014333 XM_696648
VERSION     NM_001014333.1
KEYWORDS    RefSeq.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
REFERENCE   1  (bases 1 to 2624)
  AUTHORS   Lazzaroni,F., Meessen,J.M.T.A., Sun,Y., Lanfranconi,S., Scola,E.,
            D'Alessandris,Q.G., Tassi,L., Carriero,M.R., Castori,M., Marino,S.,
            Blanda,A., Nicolis,E.B., Novelli,D., Calabrese,R., Agnelli,N.M.,
            Bottazzi,B., Leone,R., Mazzola,S., Besana,S., Catozzi,C., Nezi,L.,
            Lampugnani,M.G., Malinverno,M., Grdseloff,N., Rodel,C.J., Rezai
            Jahromi,B., Bolli,N., Passamonti,F., Magnusson,P.U.,
            Abdelilah-Seyfried,S., Dejana,E. and Latini,R.
  TITLE     Circulating biomarkers in familial cerebral cavernous malformation
  JOURNAL   EBioMedicine 99, 104914 (2024)
   PUBMED   38113759
REFERENCE   2  (bases 1 to 2624)
  AUTHORS   Elkon,R., Milon,B., Morrison,L., Shah,M., Vijayakumar,S.,
            Racherla,M., Leitch,C.C., Silipino,L., Hadi,S., Weiss-Gayet,M.,
            Barras,E., Schmid,C.D., Ait-Lounis,A., Barnes,A., Song,Y.,
            Eisenman,D.J., Eliyahu,E., Frolenkov,G.I., Strome,S.E., Durand,B.,
            Zaghloul,N.A., Jones,S.M., Reith,W. and Hertzano,R.
  TITLE     RFX transcription factors are essential for hearing in mice
  JOURNAL   Nat Commun 6, 8549 (2015)
   PUBMED   26469318
  REMARK    Publication Status: Online-Only
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC091838.1.
            
            On Jul 6, 2005 this sequence version replaced XM_696648.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC091838.1, BC164573.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA3505370,
                                           SAMEA3505371 [ECO:0006172]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..2624
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /strain="Singapore"
                     /db_xref="taxon:7955"
                     /chromosome="16"
                     /map="16"
     gene            1..2624
                     /gene="cdcp1a"
                     /gene_synonym="zgc:113071"
                     /note="CUB domain containing protein 1a"
                     /db_xref="GeneID:541520"
                     /db_xref="ZFIN:ZDB-GENE-050327-55"
     misc_feature    101..103
                     /gene="cdcp1a"
                     /gene_synonym="zgc:113071"
                     /note="upstream in-frame stop codon"
     CDS             110..2491
                     /gene="cdcp1a"
                     /gene_synonym="zgc:113071"
                     /codon_start=1
                     /product="CUB domain-containing protein 1a precursor"
                     /protein_id="NP_001014355.1"
                     /db_xref="GeneID:541520"
                     /db_xref="ZFIN:ZDB-GENE-050327-55"
                     /translation="

MRSWRVTCFSLVLLVFSLSSVLELTGGAELNVAVEQGTTILINTSSSTSTQCKVCMRVRNQPLCQAYVVLRSDTLLDFSCSQPEKVFIVQIIRDTGTMNIEPKDHSAFIKFNRTFTWNLKPLVSKSLQLNFSSTGLRQIEPEDSCPDNHRYILAVENISIGTFCQNGVIRQIDVRNAGKLSAEVTGGQSLSTKVIAVSVGRLMNSLVNIHAVLPEKSSIQDFITPNTTPENAETMWFFSMPNAYYADVRILKYTLPTCLSSESIPTMKYTWQGRDALVKRMNENQPSVEPGNFNISIKNCKMSTVSSLNRLMVHFQISAIKRRKGQCEGDLPDKQVLKIQVMKKDPKSVCVLKLDSVIMDTVTIASGNHFILNTFDCNKDELELTVIQTEECKEWRNCTSTLFPLHFNYEQQCIPGVLKMITWYIQGPVNSAVELQSPTDGLRYCLPEDNCNSILLLNVSQVMNPGTTVGQFCPKGSVQKIQIRESKIAVTASVTSFSDRSVAAKPILSYSFTQGISENYIFSVTPKMDNPTTLATPGWPSAMKASSTVSWIVNMEPQYTSVLTFRNVSQPKCKQVHTNIAVQTIRSQTVLYTTTKDDKMKDLLLPEGFYLNMTNCKSPTGAFRAMMEVTVQSNTNKLLGIILGVVGVVLAIAVAVVIWFVLRKKKRNKAPPVSVYNPSEHAFLPGLHGIPKTQEEDEENHTYAYIDDTLVYSHLLNDDADNKQHYEDTSGPHLNKPPLPDRPDRNVDSHALDKALLPNELYGYVQGQSTTSGPTRTAGKSSEEHTYETRLCV"

     sig_peptide     110..190
                     /gene="cdcp1a"
                     /gene_synonym="zgc:113071"
                     /inference="COORDINATES: ab initio prediction:SignalP:6.0"
ORIGIN      

gggggaagaagctgctttatctcctctgaggaaaactcgcgtccatggcggagtctttattacaccttattaacctactgtaaggagtttactggatatttaaaaagccatgcgaagttggcgtgtgacctgcttttcgcttgttttgctggtgttttccctctcgtcagtcctggagctcacaggtggagctgagctcaacgttgctgttgaacagggcacaaccatcctcatcaacacaagttccagcacaagcacacagtgtaaagtgtgtatgagagtgcgaaaccagcccttgtgccaggcttatgtggtcctcagaagtgatacgcttttggatttcagctgttcgcagccagagaaagtgtttattgtgcagatcatcagagacacggggacgatgaacattgaacccaaagatcacagtgcttttataaagtttaatcgcacgttcacctggaatctgaagcctttagtttcaaaatccctccagttgaatttcagtagcacgggtttacgacagattgagcctgaggacagctgtcctgacaatcacagatacatactcgcggtggagaacatcagcatcgggacattttgtcagaatggagtcatcagacaaattgacgtgcgtaatgctggaaaactgtctgcggaagtgactggaggtcagagtctaagcacgaaagtcatcgctgtatcagtgggacgtttaatgaactctctggttaacatccatgctgttctcccagagaagagctcaatccaggacttcataacaccaaacacaacccctgaaaatgcagagaccatgtggtttttcagcatgcccaatgcatactatgcagatgtgcgcattctgaagtacactcttccaacatgcctgtcgtctgaaagcatccctacaatgaagtacacctggcagggcagggatgctctggtcaagcgtatgaatgaaaaccagccgtcagtggagcctggaaactttaacatctccataaagaactgcaaaatgtccacggtgtcttcattgaacagattgatggtgcactttcagatctctgccatcaagagaaggaagggccagtgtgaaggagatctgccagacaagcaagtactgaagatacaagtaatgaaaaaggatcccaagtcggtctgtgtgttgaaactggattcggtcataatggacacagtcaccatcgcttcagggaaccattttattcttaatacctttgactgcaacaaggatgagctggagttaactgtaatccagactgaggaatgtaaagaatggaggaactgtacatccactctgttcccgcttcacttcaattatgagcagcagtgtatcccaggagtcctgaagatgatcacgtggtacattcagggtccagtcaacagtgcagtggagctacagtctcctacagacggcctgcgctactgtttgcctgaagacaattgcaacagcatcctactgctaaacgtctcccaggttatgaacccaggcaccactgttggccagttctgtccaaagggatccgttcagaagatacagatccgggagtccaagattgcagtaactgcttctgttacaagtttcagcgaccggagtgtggcagcaaaaccaatcttaagctattcgttcacacaaggcatatcggaaaactacatattcagtgtcacaccaaagatggataatcctaccacgctggcgaccccaggctggccgtctgcaatgaaagcgtccagcacagtgtcctggatagtgaacatggagccgcagtatacaagcgtgctgacattcagaaatgtcagtcagcccaagtgtaaacaagtgcacacaaacatcgcagtgcagaccattcgctctcaaacggtgctgtacaccactacaaaagatgataagatgaaggatctcctgctgccagaaggtttttacctcaacatgacgaactgcaagtcaccgacaggagccttcagggcaatgatggaggtcacggtgcagagcaacacaaacaagcttctgggcatcatcctgggcgttgtgggcgttgtgttggccatcgcagtagctgtggtaatctggtttgttctcaggaaaaagaagaggaataaggctcccccggtgtccgtgtacaaccccagtgagcacgccttccttccaggcttacatggcatcccgaaaacacaagaggaggatgaggagaaccacacgtacgcatacatagatgacactctagtgtacagccatctgcttaacgatgacgctgacaataaacagcattatgaagacacctccggcccacatctgaataaaccgccgttaccggacagaccagacagaaacgtggacagtcacgctctagacaaagcattgcttcccaatgagctgtacgggtatgtgcaggggcagtcaactacatctggaccaacaagaacagcaggcaaaagctctgaggagcacacctatgaaaccagactctgtgtgtgaccgagagctttatgaagacgtttgacgtttagcgatgttttgcgtgagcagattgcttttttttaaaaatgactgcatgcttttgatattaaaatgtctgtgcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa

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