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2024-04-20 00:46:09, GGRNA : RefSeq release 222 (Jan, 2024)

Summary:

Results:

Matches are highlighted with green background. Overlapping matches are dark colored.

Drosophila melanogaster uncharacterized protein, transcript variant A (CG4984), mRNA. (1969 bp)
misc_feature 562..>729 /gene="CG4984" /locus_tag="Dmel_CG4984" /gene_synonym="Dmel\CG4984" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" misc_feature <1378..1689 /gene="CG4984" /locus_tag="Dmel_CG4984" /gene_synonym="Dmel\CG4984" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" ORIGIN // REFERENCE 1 (bases 1 to 1969) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase...
Synonym: Dmel\CG4984
NM_137410.4 - Drosophila melanogaster (fruit fly) - NCBI - UCSC - FlyBase
Drosophila melanogaster uncharacterized protein, transcript variant B (CG4984), mRNA. (3112 bp)
misc_feature 1705..>1872 /gene="CG4984" /locus_tag="Dmel_CG4984" /gene_synonym="Dmel\CG4984" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" misc_feature <2521..2832 /gene="CG4984" /locus_tag="Dmel_CG4984" /gene_synonym="Dmel\CG4984" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" ORIGIN // REFERENCE 1 (bases 1 to 3112) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase...
Synonym: Dmel\CG4984
NM_001144223.3 - Drosophila melanogaster (fruit fly) - NCBI - UCSC - FlyBase
Drosophila melanogaster uncharacterized protein, transcript variant C (CG4984), mRNA. (1990 bp)
misc_feature 562..>729 /gene="CG4984" /locus_tag="Dmel_CG4984" /gene_synonym="Dmel\CG4984" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" misc_feature <1393..1710 /gene="CG4984" /locus_tag="Dmel_CG4984" /gene_synonym="Dmel\CG4984" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" ORIGIN // REFERENCE 1 (bases 1 to 1990) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase...
Synonym: Dmel\CG4984
NM_001169711.2 - Drosophila melanogaster (fruit fly) - NCBI - UCSC - FlyBase
Drosophila melanogaster uncharacterized protein, transcript variant D (CG4984), mRNA. (3133 bp)
misc_feature 1705..>1872 /gene="CG4984" /locus_tag="Dmel_CG4984" /gene_synonym="Dmel\CG4984" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" misc_feature <2536..2853 /gene="CG4984" /locus_tag="Dmel_CG4984" /gene_synonym="Dmel\CG4984" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" ORIGIN // REFERENCE 1 (bases 1 to 3133) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase...
Synonym: Dmel\CG4984
NM_001169712.2 - Drosophila melanogaster (fruit fly) - NCBI - UCSC - FlyBase
Drosophila melanogaster uncharacterized protein, transcript variant B (CG6398), mRNA. (1972 bp)
misc_feature 539..1189 /gene="CG6398" /locus_tag="Dmel_CG6398" /gene_synonym="Dmel\CG6398" /note="PMP-22/EMP/MP20/Claudin tight junction; Region: Claudin_2; pfam13903" /db_xref="CDD:372799" ORIGIN // REFERENCE 1 (bases 1 to 1972) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication...
Synonym: Dmel\CG6398
NM_001298462.1 - Drosophila melanogaster (fruit fly) - NCBI - UCSC - FlyBase
Drosophila melanogaster uncharacterized protein, transcript variant A (CG6398), mRNA. (1860 bp)
misc_feature 539..1189 /gene="CG6398" /locus_tag="Dmel_CG6398" /gene_synonym="Dmel\CG6398" /note="PMP-22/EMP/MP20/Claudin tight junction; Region: Claudin_2; pfam13903" /db_xref="CDD:372799" ORIGIN // REFERENCE 1 (bases 1 to 1860) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication...
Synonym: Dmel\CG6398
NM_133016.3 - Drosophila melanogaster (fruit fly) - NCBI - UCSC - FlyBase
Drosophila melanogaster kune-kune (kune), mRNA. (1060 bp)
misc_feature 140..664 /gene="kune" /locus_tag="Dmel_CG1298" /gene_synonym="CG1298; Dmel\CG1298; Kune" /note="PMP-22/EMP/MP20/Claudin tight junction; Region: Claudin_2; pfam13903" /db_xref="CDD:372799" ORIGIN // REFERENCE 1 (bases 1 to 1060) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK...
Synonym: CG1298; Dmel\CG1298; Kune
NM_136335.3 - Drosophila melanogaster (fruit fly) - NCBI - UCSC - FlyBase
Drosophila melanogaster pickel (pck), transcript variant C, mRNA. (1289 bp)
misc_feature 252..770 /gene="pck" /locus_tag="Dmel_CG14779" /gene_synonym="CG14779; Dmel\CG14779; EG:80H7.2; l(1)G0044; mega; Mega; Pck; PCK" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" ORIGIN // REFERENCE 1 (bases 1 to 1289) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3...
Synonym: CG14779; Dmel\CG14779; EG:80H7.2; l(1)G0044; mega; Mega; Pck; PCK
NM_130563.4 - Drosophila melanogaster (fruit fly) - NCBI - UCSC - FlyBase
Drosophila melanogaster pickel (pck), transcript variant A, mRNA. (1399 bp)
misc_feature 362..880 /gene="pck" /locus_tag="Dmel_CG14779" /gene_synonym="CG14779; Dmel\CG14779; EG:80H7.2; l(1)G0044; mega; Mega; Pck; PCK" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" ORIGIN // REFERENCE 1 (bases 1 to 1399) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3...
Synonym: CG14779; Dmel\CG14779; EG:80H7.2; l(1)G0044; mega; Mega; Pck; PCK
NM_166887.3 - Drosophila melanogaster (fruit fly) - NCBI - UCSC - FlyBase
Drosophila melanogaster uncharacterized protein, transcript variant F (CG45049), mRNA. (1516 bp)
misc_feature <373..672 /gene="CG45049" /locus_tag="Dmel_CG45049" /old_locus_tag="Dmel_CG17618" /old_locus_tag="Dmel_CG6982" /gene_synonym="CG17618; CG6982; Dmel\CG45049" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" ORIGIN // REFERENCE 1 (bases 1 to 1516) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL...
Synonym: CG17618; CG6982; Dmel\CG45049
NM_001300544.1 - Drosophila melanogaster (fruit fly) - NCBI - UCSC - FlyBase
Drosophila melanogaster uncharacterized protein, transcript variant B (CG45049), mRNA. (3318 bp)
misc_feature <689..988 /gene="CG45049" /locus_tag="Dmel_CG45049" /old_locus_tag="Dmel_CG17618" /old_locus_tag="Dmel_CG6982" /gene_synonym="CG17618; CG6982; Dmel\CG45049" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" ORIGIN // REFERENCE 1 (bases 1 to 3318) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL...
Synonym: CG17618; CG6982; Dmel\CG45049
NM_001104406.3 - Drosophila melanogaster (fruit fly) - NCBI - UCSC - FlyBase
Drosophila melanogaster sinuous (sinu), mRNA. (2065 bp)
misc_feature 233..772 /gene="sinu" /locus_tag="Dmel_CG10624" /gene_synonym="6524; CG10624; Dmel\CG10624; i8; l(3)06524; Sinu" /note="PMP-22/EMP/MP20/Claudin tight junction; Region: Claudin_2; pfam13903" /db_xref="CDD:372799" ORIGIN // REFERENCE 1 (bases 1 to 2065) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015)...
Synonym: 6524; CG10624; Dmel\CG10624; i8; l(3)06524; Sinu
NM_139714.4 - Drosophila melanogaster (fruit fly) - NCBI - UCSC - FlyBase
Drosophila melanogaster uncharacterized protein, transcript variant C (CG45049), mRNA. (3708 bp)
misc_feature <1079..1378 /gene="CG45049" /locus_tag="Dmel_CG45049" /old_locus_tag="Dmel_CG17618" /old_locus_tag="Dmel_CG6982" /gene_synonym="CG17618; CG6982; Dmel\CG45049" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" ORIGIN // REFERENCE 1 (bases 1 to 3708) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL...
Synonym: CG17618; CG6982; Dmel\CG45049
NM_001104407.3 - Drosophila melanogaster (fruit fly) - NCBI - UCSC - FlyBase
Drosophila melanogaster uncharacterized protein, transcript variant E (CG45049), mRNA. (3417 bp)
misc_feature <788..1087 /gene="CG45049" /locus_tag="Dmel_CG45049" /old_locus_tag="Dmel_CG17618" /old_locus_tag="Dmel_CG6982" /gene_synonym="CG17618; CG6982; Dmel\CG45049" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" ORIGIN // REFERENCE 1 (bases 1 to 3417) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL...
Synonym: CG17618; CG6982; Dmel\CG45049
NM_001300543.1 - Drosophila melanogaster (fruit fly) - NCBI - UCSC - FlyBase
Drosophila melanogaster uncharacterized protein, transcript variant D (CG45049), mRNA. (1931 bp)
misc_feature <788..1087 /gene="CG45049" /locus_tag="Dmel_CG45049" /old_locus_tag="Dmel_CG17618" /old_locus_tag="Dmel_CG6982" /gene_synonym="CG17618; CG6982; Dmel\CG45049" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" ORIGIN // REFERENCE 1 (bases 1 to 1931) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL...
Synonym: CG17618; CG6982; Dmel\CG45049
NM_001300542.1 - Drosophila melanogaster (fruit fly) - NCBI - UCSC - FlyBase
Drosophila melanogaster stargazin-like protein (stg1), mRNA. (3438 bp)
misc_feature 844..1428 /gene="stg1" /locus_tag="Dmel_CG46498" /old_locus_tag="Dmel_CG11566" /old_locus_tag="Dmel_CG33670" /gene_synonym="CG10985; CG11566; CG11568; CG11569; CG32514; CG32514-ORFA; CG33670; CG46498; Dmel\CG46498; Dro STG1; Stg1; STG1" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" ORIGIN // REFERENCE 1 (bases 1 to 3438) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model...
Synonym: CG10985; CG11566; CG11568; CG11569; CG32514; CG32514-ORFA; CG33670; CG46498; Dmel\CG46498; Dro STG1; Stg1; STG1
NM_001414114.1 - Drosophila melanogaster (fruit fly) - NCBI - UCSC - FlyBase

Data Export:

Maximum 10000 results can be retrieved as Tab-delimited text or JSON format.

Debug Info:

Redirect URI : http://ggrna.dbcls.jp/dm/claudin
lang : en | div : | spe : dm | query_string : claudin | format : html | download : 

0.000 | 0.000 | search_start;
0.078 | 0.078 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=((full_search:*:claudin)%7C(nt:claudin)%7C(aa:claudin))?source=Drosophila melanogaster (fruit fly)?to=0&format=json
0.123 | 0.045 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=((full_search:*:claudin)%7C(nt:claudin)%7C(aa:claudin))?source=Drosophila melanogaster (fruit fly)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.125 | 0.002 | cgi_end;

GGRNA ver.2 by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]