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2024-04-20 16:50:52, GGRNA : RefSeq release 222 (Jan, 2024)

Summary:

Results:

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Drosophila melanogaster uncharacterized protein, transcript variant A (CG5877), mRNA. (3696 bp)
misc_feature 663..>1169 /gene="CG5877" /locus_tag="Dmel_CG5877" /gene_synonym="Dmel\CG5877" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:429988" ORIGIN // REFERENCE 1 (bases 1 to 3696) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status:...
Synonym: Dmel\CG5877
NM_132786.4 - Drosophila melanogaster (fruit fly) - NCBI - UCSC - FlyBase
Drosophila melanogaster uncharacterized protein, transcript variant D (CG5877), mRNA. (3171 bp)
misc_feature 663..>1169 /gene="CG5877" /locus_tag="Dmel_CG5877" /gene_synonym="Dmel\CG5877" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:429988" ORIGIN // REFERENCE 1 (bases 1 to 3171) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status:...
Synonym: Dmel\CG5877
NM_001272634.2 - Drosophila melanogaster (fruit fly) - NCBI - UCSC - FlyBase
Drosophila melanogaster argonaute 2, transcript variant E (AGO2), mRNA. (3784 bp)
Ago2; Ago2a; argonaute2; CG13452; CG7439; dAgo2; dAGO2; Dm Ago2; DmAgo2; Dmel\CG7439; eIF2C2" /note="PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a...; Region: PAZ; cd02825" /db_xref="CDD:239207" misc_feature order(1788..1790,1860..1862,1872..1874,1923..1925, 1944..1946,1950..1952) /gene="AGO2" /locus_tag="Dmel_CG7439" /gene_synonym="AG02; ago; AGO 2; ago-2; Ago-2; AGO-2; AGO1; ago2;...
Synonym: AG02; ago; AGO 2; ago-2; Ago-2; AGO-2; AGO1; ago2; Ago2; Ago2a; argonaute2; CG13452; CG7439; dAgo2; dAGO2; Dm Ago2; DmAgo2; Dmel\CG7439; eIF2C2
NM_001274953.1 - Drosophila melanogaster (fruit fly) - NCBI - UCSC - FlyBase
Drosophila melanogaster argonaute 2, transcript variant B (AGO2), mRNA. (4050 bp)
Ago2; Ago2a; argonaute2; CG13452; CG7439; dAgo2; dAGO2; Dm Ago2; DmAgo2; Dmel\CG7439; eIF2C2" /note="PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a...; Region: PAZ; cd02825" /db_xref="CDD:239207" misc_feature order(2054..2056,2126..2128,2138..2140,2189..2191, 2210..2212,2216..2218) /gene="AGO2" /locus_tag="Dmel_CG7439" /gene_synonym="AG02; ago; AGO 2; ago-2; Ago-2; AGO-2; AGO1; ago2;...
Synonym: AG02; ago; AGO 2; ago-2; Ago-2; AGO-2; AGO1; ago2; Ago2; Ago2a; argonaute2; CG13452; CG7439; dAgo2; dAGO2; Dm Ago2; DmAgo2; Dmel\CG7439; eIF2C2
NM_140518.3 - Drosophila melanogaster (fruit fly) - NCBI - UCSC - FlyBase
Drosophila melanogaster argonaute 2, transcript variant C (AGO2), mRNA. (4117 bp)
Ago2; Ago2a; argonaute2; CG13452; CG7439; dAgo2; dAGO2; Dm Ago2; DmAgo2; Dmel\CG7439; eIF2C2" /note="PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a...; Region: PAZ; cd02825" /db_xref="CDD:239207" misc_feature order(2121..2123,2193..2195,2205..2207,2256..2258, 2277..2279,2283..2285) /gene="AGO2" /locus_tag="Dmel_CG7439" /gene_synonym="AG02; ago; AGO 2; ago-2; Ago-2; AGO-2; AGO1; ago2;...
Synonym: AG02; ago; AGO 2; ago-2; Ago-2; AGO-2; AGO1; ago2; Ago2; Ago2a; argonaute2; CG13452; CG7439; dAgo2; dAGO2; Dm Ago2; DmAgo2; Dmel\CG7439; eIF2C2
NM_168626.3 - Drosophila melanogaster (fruit fly) - NCBI - UCSC - FlyBase
Drosophila melanogaster Argonaute-1 (AGO1), transcript variant B, mRNA. (5738 bp)
argonaute1; CG6671; dAgo1; dAGO1; Dm Ago1; dmAgo1; DmAgo1; Dmel\CG6671; l(2)04845; l(2)4845; l(2)k00208; l(2)k08121; MRE20" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1382..1384,1427..1429,1469..1471,1481..1483, 1535..1537,1556..1558,1562..1564) /gene="AGO1" /locus_tag="Dmel_CG6671" /gene_synonym="Ago...
Synonym: Ago; ago-1; Ago-1; AGO-1; ago1; Ago1; ago1-1; Agp1; anon-WO0257455.29; argonaute1; CG6671; dAgo1; dAGO1; Dm Ago1; dmAgo1; DmAgo1; Dmel\CG6671; l(2)04845; l(2)4845; l(2)k00208; l(2)k08121; MRE20
NM_079010.4 - Drosophila melanogaster (fruit fly) - NCBI - UCSC - FlyBase
Drosophila melanogaster Argonaute-1 (AGO1), transcript variant D, mRNA. (7888 bp)
argonaute1; CG6671; dAgo1; dAGO1; Dm Ago1; dmAgo1; DmAgo1; Dmel\CG6671; l(2)04845; l(2)4845; l(2)k00208; l(2)k08121; MRE20" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1510..1512,1555..1557,1597..1599,1609..1611, 1663..1665,1684..1686,1690..1692) /gene="AGO1" /locus_tag="Dmel_CG6671" /gene_synonym="Ago...
Synonym: Ago; ago-1; Ago-1; AGO-1; ago1; Ago1; ago1-1; Agp1; anon-WO0257455.29; argonaute1; CG6671; dAgo1; dAGO1; Dm Ago1; dmAgo1; DmAgo1; Dmel\CG6671; l(2)04845; l(2)4845; l(2)k00208; l(2)k08121; MRE20
NM_001259385.1 - Drosophila melanogaster (fruit fly) - NCBI - UCSC - FlyBase
Drosophila melanogaster Argonaute-1 (AGO1), transcript variant A, mRNA. (3481 bp)
argonaute1; CG6671; dAgo1; dAGO1; Dm Ago1; dmAgo1; DmAgo1; Dmel\CG6671; l(2)04845; l(2)4845; l(2)k00208; l(2)k08121; MRE20" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1253..1255,1298..1300,1340..1342,1352..1354, 1406..1408,1427..1429,1433..1435) /gene="AGO1" /locus_tag="Dmel_CG6671" /gene_synonym="Ago...
Synonym: Ago; ago-1; Ago-1; AGO-1; ago1; Ago1; ago1-1; Agp1; anon-WO0257455.29; argonaute1; CG6671; dAgo1; dAGO1; Dm Ago1; dmAgo1; DmAgo1; Dmel\CG6671; l(2)04845; l(2)4845; l(2)k00208; l(2)k08121; MRE20
NM_166020.2 - Drosophila melanogaster (fruit fly) - NCBI - UCSC - FlyBase
Drosophila melanogaster Argonaute-1 (AGO1), transcript variant C, mRNA. (7528 bp)
argonaute1; CG6671; dAgo1; dAGO1; Dm Ago1; dmAgo1; DmAgo1; Dmel\CG6671; l(2)04845; l(2)4845; l(2)k00208; l(2)k08121; MRE20" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1510..1512,1555..1557,1597..1599,1609..1611, 1663..1665,1684..1686,1690..1692) /gene="AGO1" /locus_tag="Dmel_CG6671" /gene_synonym="Ago...
Synonym: Ago; ago-1; Ago-1; AGO-1; ago1; Ago1; ago1-1; Agp1; anon-WO0257455.29; argonaute1; CG6671; dAgo1; dAGO1; Dm Ago1; dmAgo1; DmAgo1; Dmel\CG6671; l(2)04845; l(2)4845; l(2)k00208; l(2)k08121; MRE20
NM_166021.2 - Drosophila melanogaster (fruit fly) - NCBI - UCSC - FlyBase
Drosophila melanogaster Dicer-1 (Dcr-1), mRNA. (6913 bp)
gene="Dcr-1" /locus_tag="Dmel_CG4792" /gene_synonym="cg4792; CG4792; Dcr; dcr 1; dcr-1; DCR-1; dcr1; Dcr1; DCR1; dicer; Dicer; DICER; dicer-1; DICER-1; dicer1; Dicer1; dmDcr1; Dmel\CG4792" /note="PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named...; Region: PAZ_dicer_like; cd02843" /db_xref="CDD:239209" misc_feature order...
Synonym: cg4792; CG4792; Dcr; dcr 1; dcr-1; DCR-1; dcr1; Dcr1; DCR1; dicer; Dicer; DICER; dicer-1; DICER-1; dicer1; Dicer1; dmDcr1; Dmel\CG4792
NM_079729.3 - Drosophila melanogaster (fruit fly) - NCBI - UCSC - FlyBase

Data Export:

Maximum 10000 results can be retrieved as Tab-delimited text or JSON format.

Debug Info:

Redirect URI : http://ggrna.dbcls.jp/dm/%22RNA+interference%22
lang : en | div : | spe : dm | query_string : "RNA interference" | format : html | download : 

0.000 | 0.000 | search_start;
0.081 | 0.081 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=((full_search:*:RNA+interference)%7C(nt:RNA+interference)%7C(aa:RNA+interference))?source=Drosophila melanogaster (fruit fly)?to=0&format=json
0.127 | 0.046 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=((full_search:*:RNA+interference)%7C(nt:RNA+interference)%7C(aa:RNA+interference))?source=Drosophila melanogaster (fruit fly)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.128 | 0.001 | cgi_end;

GGRNA ver.2 by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]