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2026-03-04 08:01:36, GGRNA : RefSeq release 233 (Jan, 2026)

Summary:

Results:

Matches are highlighted with green background. Overlapping matches are dark colored.

PREDICTED: Ciona intestinalis uncharacterized LOC100175924 (LOC100175924), mRNA. (1104 bp)
ORIGIN // gacgttttagtatccagaaaacgtgttaaaagtttaaccattgcacaacactgtaggtaatttcccacccacggaaattgtaattctccctctcgtaaattattcaaaacgcgttgtaccctttgtaaatattacaacgacaaacatgagcttcgaaaaatcagtgatcgaggaggcaaacaaacacctttcagctttaaacaacaaagtttcgaatctagaagcaacggtgaaagagcaggctatgcaacttattttaaaagacaaagcacatcaagaagagattgaaaatttggtaagaaaacaggaagctgaaattaacaatctaaagacgtggcttgatggaactcaagctgagatacgtcggatgaagattcgggagagagaacaagagatgatgatttcacatcttaaacatagatgttctgttctcgacagtgcaaccaagtattcatcaagcctggaaggtttattgacatgtttgatggaagctgataaactgaaaaaggtgaactatgaagatatggtaaagcgtcagctgtccgatgcttcctctttctccgcaagtgcagatataaaacatcgtggcc...
position 275
XM_078632571.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
PREDICTED: Ciona intestinalis sphingosine-1-phosphate phosphatase 2 (LOC100182290), mRNA. (2049 bp)
COORDINATES: polyA evidence [ECO:0006239]" ORIGIN // attgtaagacattgtgttgccctttaccctcaatgtgctttctgtttactttgcacttctgttgtcccagcattgtgtagctctaaacttaacaatcggtgtgaatattaaacttttgcaccccgtgctggcgatgcatttctcttttgtcactcggagcacttgccggtttgcgctttgtttcttttattctctcgttgagcatacagatcatgcgctctgtcacggggctgacaagaagagattgtaaagcaaacgttcgttggttgctatagcgtatataacagcgtgggcgcgcccctttcaacgatagtttgtcggctggcgctgtgagtggtaactaagtttcattataatggatcttctttggaggtttactgattactttatggactttaacaaggtccgacattttcaagaactatgcggactacaagaggcaaaacttaatttagacagtgcatcgaatggcacaatatgcgaggaacaagatggaacaggatcgttgtactccagcgccagcaaaaaccacctgaagacagattta...
position 235
XM_002130226.5 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
Ciona intestinalis beta-catenin (cibeta-catenin), mRNA. (2732 bp)
aacaactggaacactccatatattggctcgtgaacctcacagtagatcggtcatccgaggacttaacacaatccctctgtttgtgcaacttctttattcacaggttgagaacatccagcgggtggcagcaggcgtgttgtgcgaattagcgcaagacaaggaaagtgccgacctcatcgagaacgagggggcgagcgctccattgaccgagttgttgcattccaaaaatgaaggagttgccacgtacgcggctgctgcattattccgcatgtccgaggataaatcgcaagattacaagaagagattgtctgttgagttgacgagctccttgttcaaggatgatggagctttatataatggtgcggacctaatggacccctgcatgcaaggttaccaacaccagatgacccccccgatgtctcatcaaagctccgtcagttcagttcataactcgcaccattctgggttcccacaagcagaaggccaacaacccatggactttcaacaacacctcgtccccccggcagattacccgctaccagacctttcaaacgacttggaccttgaaccaatgattggtgttcaacaaccatggctcga...
position 2065
Synonym: CTNNB1
NM_001032607.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
PREDICTED: Ciona intestinalis ribosome biogenesis protein bop1-A-like (LOC100177341), mRNA. (2863 bp)
ttacatccaataaataatgcccctgcacataaaagaagtttcaccccttctatggtggaaaaacgcaaagttggcaagcttgtccatgctattaaaatgggttggcttaaagttggcaagtccaagcaagatgatgaagaacaaatcaagttctatgatttatgggcagatgtgaatgatgataaaaagagccacagtgaacttgcgagacagaaaatgcatattcctgcccctaaaccagcactgccagggcatgaagcatcttataatccacccccagagtatttaccaagtcaagaagagattgaccaatggaaagaagacgacccagaagatcggaagtttgatttcatccccgggaagtacgatgcattgagaagagttcctcaatatcccaagttcatccaggaaagattcgctcgatgcctcgacctttatttgtgtcctcgtcagagaaaaatgaagtttaacgtgaaccctgatgacctcatccctgaccttcctaaacctcgtgaccttcgacctttccccaccgtacaagctctgtgttacaggggtcaccaggccatggtccgtactatatcggtggatactacagga...
position 1328
XM_078629648.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
PREDICTED: Ciona intestinalis regulator of nonsense transcripts 1 (LOC100181729), mRNA. (4039 bp)
cagttgatcttagttggtgaccattgtcagttgggacctgtagttatgtgcaagaaagcagccaatgcagggcttgcccaatcactgtttgagaggctggtggtgcttgggattcgaccaatcagattgcaggtacaataccgtatgcacccagctttatctgccttcccatccaatatattctatgaaggatctctacagaatggagtgactgcaggtgaaagaatgcgaaagaacctaagctttgtttggccatcccctgataaaccaatgttcttctataaaacatcagggcaagaagagattgcaagttctggtacttcataccttaatagaactgaagccgcggttgttgaacgaattacaaccaagttccttaaatctggtatcaaacctgagcagatagggattataactccatatgaaggacagagatcttacttggtgcagtacatgcagtattctggctccctgcattctaagctgtatatggaggtagagatagccagtgttgatgctttccaaggtcgtgagaaagactttatcatcctgtcatgtgtgagggccaatgaacatcaaggcatcgggttcctgaacgat...
position 2273
XM_078632381.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
PREDICTED: Ciona intestinalis uncharacterized LOC100175432 (LOC100175432), mRNA. (4084 bp)
atacaggtttgggaagcagttctaagtcgaagttcggatgacggtcgagtcttcatcttccaacctcactcgtggaacgaggagctacgggatgactttagtttcctcattatccctgagatgtcatcagagggtttaccacaagtcgtcatgttcctttgtccaagagaagtcactcctaatttaaactgggatggaatatttagagatagatcaactaccagcagcaatgaagctgtcagccctgaagagagagatcgtttaagaagcagacaggaacaattgcgccaaagacaagaagagattgcaagagaacaaagaaggcaagtagaagaaagaagaaggcagcaagaattggagagacagcaaagagaagaagggcaatcaacccaggtaacaactacaacacaactacaaacacaaagaactcagccagcaacaacacaaacaacaagaagacccccaacaagaagaccaacaacaagaagaccaacaacacgaagaccaacaacaagaagaccaacaagaagaccaaacacatcatcgtcaaggagatgttcgaacccgatgggaattcccccttctaaccccggacaaaca...
position 2228
XM_078632150.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
PREDICTED: Ciona intestinalis zinc finger (C-x8-C-x5-C-x3-H/C2H2)-1 (zf(c3h/c2h2)-1), transcript variant X2, mRNA. (5295 bp)
atattgcgcaatccacttcacgatacgcacgagtttaaactcggatgttccgactgtgtcttgaggaccggaccaagggtcacagacttcagacacgatgagaatattgtccattcctgctacaaaaacattgtactttgtcgacgtcgtggcaacaaggattggttgaaaatacgaccaagacctcaaccgcagtccaaggcccagttatatgatggtccttattatatatgcaaggatctgatggctgggcaggattgcacgtaccctgctgtgtgtacattcgcttacaaccaagaagagattgatgtatggacacttgaaagaaaaggaatgcttaacagggcatggctgtgcaagtcaatggatctgaattatgtgaacaagctttctttagttggtttgcttatctgcaaacatcgtggaacgtttgactttctctgtcgatcttgcttccagaacaaacctcgcatcattagtatgttttcaggcaactcaaacaaatgtaccaatgagagcagccctcatttaaatacagaagaaaaccaacagttgactcatatattgcgcgaatcttcagttcgtttcactgagataagg...
position 3208
XM_002126622.5 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
PREDICTED: Ciona intestinalis zinc finger (C-x8-C-x5-C-x3-H/C2H2)-1 (zf(c3h/c2h2)-1), transcript variant X1, mRNA. (5319 bp)
atattgcgcaatccacttcacgatacgcacgagtttaaactcggatgttccgactgtgtcttgaggaccggaccaagggtcacagacttcagacacgatgagaatattgtccattcctgctacaaaaacattgtactttgtcgacgtcgtggcaacaaggattggttgaaaatacgaccaagacctcaaccgcagtccaaggcccagttatatgatggtccttattatatatgcaaggatctgatggctgggcaggattgcacgtaccctgctgtgtgtacattcgcttacaaccaagaagagattgatgtatggacacttgaaagaaaaggaatgcttaacagggcatggctgtgcaagtcaatggatctgaattatgtgaacaagctttctttagttggtttgcttatctgcaaacatcgtggaacgtttgactttctctgtcgatcttgcttccagaacaaacctcgcatcattagtatgttttcaggcaactcaaacaaatgtaccaatgagagcagccctcatttaaatacagaagaaaaccaacagttgactcatatattgcgcgaatcttcagttcgtttcactgagataagg...
position 3208
XM_018817911.3 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
PREDICTED: Ciona intestinalis uncharacterized LOC101242752 (LOC101242752), mRNA. (5448 bp)
ggaacaaccagcccgacaggaagcccaacatcaacaattgttcacgccaacccaacagcccacctacaaccagcaggaaccggtctcatccggttttagatccagtcagagtcggagtaagcttagctcctctgaagtaagcaacagtactcggcaaagtagtctccgcagatcagagtcggctggaggtcatgacgcgaggcgggaaccggagagcgggagcaactgggaacagagctgttttaacaacatgccagacgagctgaggcaaaagaaaggttacttgtcctcaatcaagaagagattgacgttttcgaggcctccgaagaacacggatacagatacttttcttaccgagctgagcgcacagtttgacgaagcaatgaacttgattgatgacattgaacttcccgaggaagaggaaacgataaagtatggcgagaagtggagctaccttccaaaagccgaaacagaaccggagcttgaaagtacaaagcaggaagcacctgttgtgacaacagaagaaatagtttcccttcccgaaccgtcacccgtggtagaaccggtttcgggccaaaagtcaacagatagagaacgtgt...
position 2982
XM_078626522.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

Data Export:

Maximum 10000 results can be retrieved as Tab-delimited text or JSON format.

Debug Info:

Redirect URI : https://ggrna.dbcls.jp/ci/seq%3acaagaagagattg
lang : en | div : | spe : ci | query_string : seq:caagaagagattg | format : html | download : 

0.000 | 0.000 | search_start;
0.417 | 0.417 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:caagaagagattg)?source=Ciona intestinalis (vase tunicate)?to=0&format=json
0.950 | 0.533 | search_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:caagaagagattg)?source=Ciona intestinalis (vase tunicate)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.951 | 0.001 | cgi_end;

GGRNA ver.2 by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]