LOCUS       XM_078630966            1722 bp    mRNA    linear   INV 21-JAN-2026
DEFINITION  PREDICTED: Ciona intestinalis vacuolar protein sorting-associated
            protein 37B-like (LOC100179674), mRNA.
ACCESSION   XM_078630966
VERSION     XM_078630966.1
DBLINK      BioProject: PRJNA1397229
KEYWORDS    RefSeq; corrected model.
SOURCE      Ciona intestinalis (vase tunicate)
  ORGANISM  Ciona intestinalis
            Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia;
            Cionidae; Ciona.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_136099) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_018327825.1-RS_2026_01
            Annotation Pipeline         :: NCBI Eukaryotic Genome Annotation
                                           Pipeline (EGAP)
            Annotation Software Version :: 10.5
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 01/16/2026
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-717               AP043573.1         8416257-8416973
            718-830             AP043573.1         8417274-8417386
            831-831             "N"                1-1
            832-891             AP043573.1         8417387-8417446
            892-974             AP043573.1         8418090-8418172
            975-1722            AP043573.1         8418428-8419175
FEATURES             Location/Qualifiers
     source          1..1722
                     /organism="Ciona intestinalis"
                     /mol_type="mRNA"
                     /db_xref="taxon:7719"
                     /chromosome="7"
                     /geo_loc_name="France:Roscoff"
                     /collection_date="2018-11-26"
     gene            1..1722
                     /gene="LOC100179674"
                     /note="vacuolar protein sorting-associated protein
                     37B-like; The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 91 long SRA reads, 4 Proteins, and 93%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:100179674"
     CDS             549..1307
                     /gene="LOC100179674"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: vacuolar protein
                     sorting-associated protein 37B-like"
                     /protein_id="XP_078487092.1"
                     /db_xref="GeneID:100179674"
                     /translation="

MSQWSYNQYSHHGNRPAPNPKDEDDFSELLEDASKDELQMLIDNEDKILEIVMDDKKVKDMKMDNVMQQASNRSIADDNISKEPHLTQLRDALAXKYETLKQLNDTFLLNQAKLESLQKDTNLETTLAVLQTTCAQTEEESEELAEAFFAGNLPIGEFLTQFKAKRMLAHNRHIKTDKMKELVLEVQRQTSTPAVPPRNQPTNQTPAYPGSSRSAPHHTPYSSGYGVPQQGKYPGTSFNQPTGQQYLASNWK"

     polyA_site      1722
                     /gene="LOC100179674"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

atttatcaatttaaactcgtctatttaatggatcgaaactccataaaatttcaaacgtgttggaatgtaaatgtgagccttacacctgaccaatcgaaccacaaaattttagttaagttactaacttttgtaataaacaaataagaaaatcaaagagaaaaagttaaacggtaacattggacaaaatgcgcctatcggcctatgtgtattttgacaaattgttttggcaggaattggggagtgcttaaatttatcgtttacaaaactttaaataaaattgttaaaaaatataaacaaactgatatttttatatcaacgttaaatgtaacgatcaaagtagaaccgaagagattaaaaccactcattggttttaatctctttggtagaacaatatatacggcaacactgtacgttttcatcacatgacaatcggaattcttcggagatattcggatttatcctgagcccctgttcaattttataaccaaaaagttgtaaacgcttgtacgaattttacatttgactgatatacgagaatattatttacaatgtcacaatggagttacaaccaatacagccatcatggtaatcgtccagcaccaaacccaaaagatgaagacgacttttccgaactcctggaagatgcgtctaaagacgagctgcagatgttgattgacaacgaagataaaatattagaaatagtaatggatgataaaaaggttaaagacatgaagatggataacgtaatgcagcaagcatcaaacagaagtattgcagatgataatatcagtaaagaacctcatcttacccaactaagagatgctttggcangaaaatatgagacattgaaacaactgaatgatactttcttattaaaccaagctaaattagaatcacttcaaaaagacacaaacctcgaaacaactcttgctgttcttcaaacaacatgtgcacaaactgaggaagaatcagaggaacttgctgaagcttttttcgctggaaatcttccaattggagaattccttactcagtttaaagcgaaacgaatgttggcacacaaccgacacattaaaactgataaaatgaaggaattagttttggaagtacaaaggcaaacttccacaccagcggtgccaccaaggaaccaaccaaccaaccaaaccccagcttaccctggatcttcaaggagcgctccccaccacaccccatattctagtgggtatggagtaccacaacaggggaagtacccaggtaccagtttcaaccagccaacaggacaacagtacctagcatctaattggaagtgaaaaaaagattttagaaatatggaatatttttcctagttgctactaaagtggttgaattagaaaacaaatattataaagtcaacaaaagtgaaaactaaacaattcaaactctaacgctggtgatgaaatacattatttcataaatccaaagaaatatttcaactcgttacatggaagatcatattaactcattgcttatttaattctggtagaaatttttaaaaaaattcttaattttttccgccttttcttacatgtgtaacaatggaattagtgatgttatagcaaggtttactacagcacaattaaacttctctctccttctttcttgtctttatgtgctcttgaattattattgttattgtactccacttactatagccaccgtacacttccattaaaaatcattaccttg

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