2024-05-15 19:18:45, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_018817356 3792 bp mRNA linear INV 22-OCT-2018 DEFINITION PREDICTED: Ciona intestinalis protein argonaute-2 (LOC100181160), transcript variant X1, mRNA. ACCESSION XM_018817356 VERSION XM_018817356.2 DBLINK BioProject: PRJNA187185 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_020167.2) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Oct 22, 2018 this sequence version replaced XM_018817356.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Ciona intestinalis Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3792 /organism="Ciona intestinalis" /mol_type="mRNA" /db_xref="taxon:7719" /chromosome="2" gene 1..3792 /gene="LOC100181160" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 184 ESTs, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 119 samples with support for all annotated introns" /db_xref="GeneID:100181160" CDS 98..2881 /gene="LOC100181160" /codon_start=1 /product="protein argonaute-2 isoform X1" /protein_id="XP_018672901.1" /db_xref="GeneID:100181160" /translation="
MKFTENNLSNPMYQPTGPGQPILPQYGALAGGVPPPQGPAPPGVPPNPMQQAPPAQLIPPNGRRLYSYPATMDPRFPIATVARDIDFQAPPRPNQGQVGKPIWLKANYFKVSIPNGDIHHYDIDIKPDKCPRRVNREIINTMVENFRSAIFQDRKPVFDGRKNLYTAQPLPIDKQKLEVEVTLPGEGRDRTFTVAIKWASRVSLYSLKLALEGKMHGIPFETVQSLDVVMRHLPSLRYTPVGRSFFSAPEGYTPPLGGGREVWFGFHQSMRPSQWKMMLNIDVSATAFYRAQSCVQFLCDVLELRIEDLRLIRGLTDSQRVKFTKEIRGLKVEITHCGTMRRKYRVCNVTRRAASTQTFPLQLESGQTIECSVARYFQEKHSKTLQFPFLPCLQVGQEQKHTYLPIEVCNIVQGQRCIKKLTDSQTSTMIKATARSAPDREKEIAQLVRKAQFNNDPYVKEFGIQVIDEMTEVRGRVLPPPKIQYGGDPLMQATPNQGVWDMRGKQFHSGISIDVWAIACFAHQRMCSDQHLRTFIKSLQRISEDAGMPIRGTPVFCKYAQGSEHVEPLFRHLCDEFRALQLIVVILPGKTPVYAEVKRVGDTLLGIATQCVQVKNVVKTSPQTLSNLCLKINVKLGGVNNILVPSLRPKVFNDPVIFFGADVTHPPAGDTRKPSIAAVVGSMDAHPSRYSATVRVQQHREEIIRDLAIMVRDLMVEFYKATHYKPVRVIMYRDGVSEGQFQQVLSTELRAIREACTMLEVGYQPGITFIVVQKRHHTRLFCRNHEDRSGKSGNIPAGTTVDIGICHPTEFDFYLCSHAGIQGTSRPSHYHVLWDDNNFMADELQVLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKDHDSGEGSLQSGHTQHDQDAQLQAMSKAVVVHENTVRNMYFA"
misc_feature 254..2875 /gene="LOC100181160" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 1466..2743 /gene="LOC100181160" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1877..1879,1889..1891,1925..1936,1943..1945, 1967..1969,1976..1978,1988..1990,2000..2002) /gene="LOC100181160" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2081..2083,2087..2089,2297..2299,2711..2713) /gene="LOC100181160" /note="active site" /db_xref="CDD:240015" ORIGIN
ttttagtgtgtatttttttctttataaaaagttttactaaaatttgcatcgctactggcgtcaaacgtcggtaccttgcccctggacactgccttttatgaagttcaccgagaacaatttgagtaatccaatgtatcagccgacgggtccgggccagccaatattgccacaatatggcgccctggcagggggggttccaccaccacagggtcctgccccacctggagtcccacccaaccccatgcagcaagcaccacctgcccagctgattccaccaaacggaagacgcttatattcctacccagctacaatggaccctcgcttccccatcgctactgtggcacgcgatatcgacttccaagctcctcccagaccaaaccaaggtcaagttgggaaaccaatctggttaaaagcaaactactttaaagtttccattcctaatggagatattcatcattatgatattgatattaaacctgacaagtgtccacgacgagtaaacagagagattattaacacgatggtagaaaactttcgttcagctatttttcaagatcgtaaacctgtgtttgatggacgcaagaacctatacacggcacaacctcttccaattgataaacagaagcttgaagttgaagttacattgcctggtgaaggcagagatcgtacatttactgtggcaatcaagtgggcatctagggtttccctttattctctcaagcttgcacttgaaggaaaaatgcatggcattccatttgaaacagtacagtctcttgatgtagtgatgcgtcatttgccatcactaagatacacccctgttggtcgatctttcttttcagcgccagaaggctacacccctccacttggtggtggtagagaggtgtggtttggatttcatcaatccatgcgcccatcacaatggaaaatgatgcttaacatcgatgtgtcagccactgctttctatcgggctcaatcatgtgttcaattcctttgtgacgttcttgaactaagaattgaagatttgagattgatcagaggtttgacagactcacagcgtgttaagttcacaaaagaaattcgtggattgaaggttgagataactcactgtggaacaatgcgtcgtaaatatcgtgtatgtaatgtgacaaggagagctgcttctacacaaacattcccacttcagttggaatctggtcaaaccattgaatgttctgttgccagatatttccaggaaaaacattcaaagactctgcagtttcccttccttccttgtttgcaagttggccaggaacaaaagcacacctaccttccaattgaagtatgtaatatcgttcaaggtcaaagatgtattaaaaaattaactgacagccaaacctcaacaatgatcaaggctactgcacgttcagcaccagatcgggagaaagaaattgcgcagttggttcgcaaagctcagtttaacaacgatccttatgtgaaggagtttggaatacaggttattgatgaaatgactgaggttcgtggaagagtgcttccaccacccaagattcaatatggtggagatcctctaatgcaagctactccaaaccaaggtgtgtgggatatgaggggaaaacaattccattctggtatcagcatagatgtgtgggcaatcgcttgttttgctcatcagagaatgtgctcggaccaacatttacgaacattcatcaagagtttgcaacgtatatcggaagatgctggcatgccaattcgtggcacccccgtcttctgtaaatatgcacaaggttctgagcatgttgaaccattgttcaggcacctgtgcgatgagttccgtgccctgcagttaattgttgttattctacctggcaaaactccagtatacgctgaggtaaagagagttggggatactctgcttggtattgctacccagtgtgtacaggtcaagaatgtggtaaaaacatcacctcaaactctttccaacctttgcttgaagatcaatgtgaaacttggtggtgttaataacatccttgttccatcactgaggccaaaggtatttaatgatcctgtaatattctttggtgctgatgttactcacccaccagctggagatacaagaaaaccttccattgctgctgttgtgggtagcatggatgcccacccatctcgttatagtgccacagtgagggtgcaacaacatcgagaagaaataatccgtgatcttgccatcatggttcgtgatctgatggtggaattttacaaagcaactcattataaacctgttagagttatcatgtacagagatggagtatctgaagggcagtttcaacaggtgctgtcaacggagcttcgtgccattcgtgaagcttgcacaatgcttgaggttggttaccaacctggcattacattcattgtggtacagaagcgacatcatactcgtctattttgtcggaatcacgaggacaggagtggtaaaagtggaaacataccagctggaaccactgttgatattggtatctgccatccaactgagtttgacttttacctctgcagtcatgctggtattcagggcacatccagaccctcgcattaccatgtgttatgggatgataataacttcatggctgatgagcttcaagttcttacctatcaactttgccatacatacgttcgctgcaccagatccgtatctatacctgccccagcatattatgctcacttggtggcgttcagagctcgttatcacttggtggacaaagaccacgacagtggtgaaggttccttacaaagtggacatacacaacacgatcaagatgcacagttgcaagccatgtccaaggcagttgttgtacatgagaatactgtgaggaacatgtactttgcatgagtgcattcaactacattagctcaagttttgcatgtttttaggaaaatctctgtttttgagtgttttatctaatttcattctattttatgcgatgaacagagtgctttccacacttgtagaatatgaacaataattaaactgtgataactccccacgatcaagtgtggttgtgagcaaatcatgttaatggtgtaaaccaccatttaattgtctgtacttaccaagttcacctaatatatataaacacatattgtaaaaaacctgattgtcattgtattcatccttactagattgtacaaaccataatatccaacatagctactacatatgtacaaaattgtacagtatgcgttatcccccttatactaatgattaataaaatgtacagcagtaaggataaacaaattgattccaaaattgactgtttatgttcgttcatttatgctgcgtgttgtgaagcagcagaaagttcttgtttgatcaatgcttgccaccgtggtgtttttatacaaggcgctgggttgccagacaaaagtgaacccatagcaaccaccgaaacccaaagaggttgcttacctgcgtatgaccgtgtcatcgcggaccttttgtctggcaagtataaccagtgcctgtaatggtttcctcaaaagattgtaaatgtgtaattacttgtcaatcctttgtactctgtacatattcttttactgtacatacacttcagtcgcatacaaaccataacaattccaactgtataatattaatctaaactttattttgtattgttgtgttatacaaccattttagaataactttttaacacaaaaataggcggaaattataatgaaactcctggagtagctgcttgtaaacatagcgcttgatgaaatgtaaataaaatgttaatcaattaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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