2024-05-02 12:53:37, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_009863539 619 bp mRNA linear INV 22-OCT-2018 DEFINITION PREDICTED: Ciona intestinalis homeobox protein ceh-22-like (LOC104266693), partial mRNA. ACCESSION XM_009863539 VERSION XM_009863539.1 DBLINK BioProject: PRJNA187185 KEYWORDS RefSeq; includes ab initio. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_004190492.2) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Ciona intestinalis Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 100% of CDS bases ##RefSeq-Attributes-END## COMPLETENESS: incomplete on the 3' end. FEATURES Location/Qualifiers source 1..619 /organism="Ciona intestinalis" /mol_type="mRNA" /db_xref="taxon:7719" /chromosome="Unknown" gene 1..>619 /gene="LOC104266693" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins" /db_xref="GeneID:104266693" CDS 1..>619 /gene="LOC104266693" /codon_start=1 /product="homeobox protein ceh-22-like" /protein_id="XP_009861841.1" /db_xref="GeneID:104266693" /translation="
MHATKSSSFSVRDILQMPGHPTQWYHSNSDYGMPDDKRDYYEQERDKGIKEYDHSDVITGHSDIMTGHNTFQPPPYFHNDSINEHAIESTLTEDQADVTSSQLTSYPASGSSQSRDENISRESLDHVVADDVINDSCFIRHNEKPTSPDSDVIMNKRDEVEKRRKRRVLFSKQQTYELDRRFRHQKYLSAPEREALANTIGVNAHA"
misc_feature 496..>606 /gene="LOC104266693" /note="Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner; Region: homeodomain; cl00084" /db_xref="CDD:444687" ORIGIN
atgcacgcaaccaaaagcagcagtttttctgtgagggatattctacaaatgcccggccatccaacccagtggtatcatagcaacagtgattatgggatgcctgatgataagagagattattacgaacaagagagagacaaaggcatcaaggaatatgatcatagtgacgtcataacgggtcatagtgacataatgaccggtcacaatacatttcaaccacccccttattttcacaacgattcgattaacgaacacgccatagaaagcacattaacggaagatcaagcggatgtgacgtcatcacagcttacgtcataccctgctagcggttccagccaatcacgagatgagaatatttcgcgggaaagtttggaccacgtggtcgctgatgacgtcattaacgattcgtgtttcatacgtcacaatgagaaaccgacaagccctgatagtgacgtcataatgaacaaacgcgatgaggtagagaagcgtcgaaaacgaagggttttgttctcgaagcaacaaacatacgaactagatcgacggtttcgacatcaaaagtatttgtcggcgccagagagggaggcgttggcgaatactatcggngttaacgcccacgcag
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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