LOCUS       XM_004226774             802 bp    mRNA    linear   INV 21-JAN-2026
DEFINITION  PREDICTED: Ciona intestinalis small ribosomal subunit protein uS7
            (LOC100186730), transcript variant X1, mRNA.
ACCESSION   XM_004226774
VERSION     XM_004226774.4
DBLINK      BioProject: PRJNA1397229
KEYWORDS    RefSeq.
SOURCE      Ciona intestinalis (vase tunicate)
  ORGANISM  Ciona intestinalis
            Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia;
            Cionidae; Ciona.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_136105) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2026 this sequence version replaced XM_004226774.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_018327825.1-RS_2026_01
            Annotation Pipeline         :: NCBI Eukaryotic Genome Annotation
                                           Pipeline (EGAP)
            Annotation Software Version :: 10.5
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 01/16/2026
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..802
                     /organism="Ciona intestinalis"
                     /mol_type="mRNA"
                     /db_xref="taxon:7719"
                     /chromosome="13"
                     /geo_loc_name="France:Roscoff"
                     /collection_date="2018-11-26"
     gene            1..802
                     /gene="LOC100186730"
                     /note="small ribosomal subunit protein uS7; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 ESTs, 4266 long SRA reads, 32 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 102 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:100186730"
     CDS             150..764
                     /gene="LOC100186730"
                     /codon_start=1
                     /product="small ribosomal subunit protein uS7"
                     /protein_id="XP_004226822.1"
                     /db_xref="GeneID:100186730"
                     /translation="

MEEDYEADVIVAEAPEVKLFGRWTTSDVQINDISLTDYLPVKDKYSKYLPHSSGRYQIKRFRKAQCPIVERLVNSMMMHGRNTGKKLLTVRIIKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQSVDVSPLRRVNQAIWLLCTGAREASFRNIKTIAECLADELINAHKGSSNSYAIKKKDELERVAKSNR"

     misc_feature    201..761
                     /gene="LOC100186730"
                     /note="Eukaryota homolog of Ribosomal Protein S7; Region:
                     uS7_Eukaryote; cd14867"
                     /db_xref="CDD:271246"
     misc_feature    order(201..203,288..296,300..311,408..410,420..422)
                     /gene="LOC100186730"
                     /note="S9 interface [polypeptide binding]; other site"
                     /db_xref="CDD:271246"
     misc_feature    order(300..302,306..308,318..329,336..338,360..362,
                     369..371,375..389,399..413,420..422,540..548,552..554,
                     582..584,603..605,624..626,633..635,651..656)
                     /gene="LOC100186730"
                     /note="rRNA binding site [nucleotide binding]; other site"
                     /db_xref="CDD:271246"
     misc_feature    order(432..434,441..446,453..455,651..653,657..662)
                     /gene="LOC100186730"
                     /note="S25 interface [polypeptide binding]; other site"
                     /db_xref="CDD:271246"
     misc_feature    order(537..539,546..548,552..554,759..761)
                     /gene="LOC100186730"
                     /note="S11 interface [polypeptide binding]; other site"
                     /db_xref="CDD:271246"
     polyA_site      802
                     /gene="LOC100186730"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

tttgttatcgaatgcagattatgtgttttatttaaccatactgctcccctataaactttaccgtttagcgccgacagtggcggaaaatcgcgtgtagtttctcttctctaagtcgtcatttcccttttcagaaaagtcgccacgaaaatatggaggaagactacgaagcagacgttatcgtagctgaagcacctgaggtgaaattgttcggacgatggacaaccagtgatgtgcagatcaatgacatctcacttacggactacttacccgtgaaggacaaatactccaagtatcttccccacagctccgggcgttaccagatcaaacgcttccgtaaagcacaatgtcccattgtggagcgcttggttaactccatgatgatgcatgggcgtaataccggcaagaaactgctgactgttcgaatcattaaacatgcgttcgagattatccatctcttgactggtgaaaacccactccaagtgttggtgaatgcgattatcaacagtggtccacgtgaagattccactcgtattgggcgtgctggtactgtaagaagacagtctgtagacgtatcaccactgcgacgtgtcaaccaagctatctggttattgtgcaccggcgcacgtgaggcttctttccgtaacattaagacaattgctgagtgcttagctgatgaactcattaacgctcataagggctcatctaactcgtatgccatcaagaagaaggacgaacttgagagagtcgcgaaatccaaccgttaaaatgcatcggcattaatggaaataaaatcttaaaccaa

//