2024-11-01 08:25:41, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS XM_002130541 4859 bp mRNA linear INV 22-OCT-2018 DEFINITION PREDICTED: Ciona intestinalis piwi-like protein 2 (LOC100181639), mRNA. ACCESSION XM_002130541 VERSION XM_002130541.5 DBLINK BioProject: PRJNA187185 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_020176.2) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Oct 22, 2018 this sequence version replaced XM_002130541.4. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Ciona intestinalis Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4859 /organism="Ciona intestinalis" /mol_type="mRNA" /db_xref="taxon:7719" /chromosome="11" gene 1..4859 /gene="LOC100181639" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 27 ESTs, 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 32 samples with support for all annotated introns" /db_xref="GeneID:100181639" CDS 128..2932 /gene="LOC100181639" /codon_start=1 /product="piwi-like protein 2" /protein_id="XP_002130577.2" /db_xref="GeneID:100181639" /translation="
MDKFNLPSVGRGRGLSVLKLLQEKSDSEAKSEECGSTTTLAAGDNTGVDSAVSKLSLTSSLGRGQTVGLIGRGQALSPPFQLQGAAGRGQMSFLSKGRGSALLQELGIGKSAEALKPCESLPVVLREKTPEVELKKQKTLTTQPQSIAQPSITSQDITKVDEVVKYHGQSGRRNDIRVNCVRVKCINLAVYQYHVSFEPVVDSRNMRFMLLNQHREVIGNTKAFDGTILYLPMKLELNELRLKSKRVTDEADIVVLIRFTKAIDPASSQLIPFYNTVLKRCMRLLDMCPVGRNYYDPTSPKTIEKLQLILWPGYVTAIKKFEDGLMLNIDVSHKVLRQDTAKHVMVEAYKRSPNQYRDACVKELVGAIVLTRYNNKNYRVDDIAWDMTPSSSFTNSKGDKLTFVEYYKVQYKIEITDLKQPMLVHRPKKQTQRDFKRNEGEDYCICLVPELCYLTGLSDKLRSDFRAMREIRDNTSFDPTRRNACLEEFLKRVNMNTNAKNELLRWGLELDMKTCSTFSRSLPSEKIMVGRNQVFSCGPDADFGREVTRSPVITPIPINNWLLVFVKRDSNKAENFFQKMMECTRKLGIDLSKPRFLQLNDDRTTSYKDAISQSLNPSTQLVVCIFPTSRDDRYNAIKKLCCVDMPVPSQVIISRTLPDDAKMGKFRSVTMKIALQINCKLGGELWTVDIPLKGLMVCGIDVYHDPLKRGKSVAAFIASSNRLMSTWFSKAIIQQPHQELIDSLKQCFVNALKNYYELNHALPERIVIFRDGVGDGQLNIVAEHEVVQLQSCFEMFSKVKGDKYNPMLTVVVVSKRINTKYFSLDSKGLSNPCPGSVLDHTVTRPNWPDYFLVSQHVRQGTVSPTHYIVVSGHEHLKPDHMQRLSYKLTHMYYNWPGTVRVPAPCQYAHKLAYLVGQSLGQHPAPQLCNKLFYL"
misc_feature 992..1141 /gene="LOC100181639" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 1103..1501 /gene="LOC100181639" /note="PAZ domain, Piwi_like subfamily. In multi-cellular organisms, the Piwi protein appears to be essential for the maintenance of germline stem cells. In the Drosophila male germline, Piwi was shown to be involved in the silencing of retrotransposons in the...; Region: PAZ_piwi_like; cd02845" /db_xref="CDD:239211" misc_feature order(1271..1273,1310..1312,1334..1336,1346..1348, 1400..1402,1460..1462,1466..1468) /gene="LOC100181639" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239211" misc_feature 1523..2878 /gene="LOC100181639" /note="PIWI domain, Piwi-like subfamily found in eukaryotes. This domain is found in Piwi and closely related proteins, where it is believed to perform a crucial role in germline cells, via RNA silencing. RNA silencing refers to a group of related...; Region: Piwi_piwi-like_Euk; cd04658" /db_xref="CDD:240016" misc_feature order(2027..2029,2039..2041,2075..2086,2093..2095, 2132..2134,2141..2143,2153..2155,2165..2167) /gene="LOC100181639" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240016" misc_feature order(2228..2230,2234..2236,2438..2440,2852..2854) /gene="LOC100181639" /note="active site" /db_xref="CDD:240016" ORIGIN
caagttgtttgcctttaattatagataccttgaatgttaatgaatgtcgaaaactaatgtattttgtgccgttaaattaatgcaactaagtctttgaacgtactttctgcgaattcgtttgtataagatggataagtttaacttaccaagcgttggaagaggccgcgggctttcagttttaaaattacttcaagaaaaatctgattctgaagctaaatctgaagaatgtggttccaccaccacacttgctgcaggggataacacaggggttgattctgccgtgtcaaaactaagtctgacaagctcactaggccgaggtcaaactgttgggttgataggtcgtgggcaagctttgtcgcccccatttcaactgcaaggtgctgctggtcgtggacaaatgtcatttttgtcaaaaggacgaggctctgctttacttcaggagcttggtattggtaaatcagcagaagctctaaaaccttgtgaaagtctgcccgttgtattgagagaaaagacaccagaagttgaacttaaaaagcagaaaactttaaccactcaaccacaatcaattgctcaaccatcaataacatcacaggatatcactaaggtggatgaggttgttaaataccatggtcaaagtggtcgacgaaacgatatacgagttaactgtgttcgtgtgaaatgcattaaccttgctgtatatcaataccatgtctcctttgaaccagtggttgacagcagaaacatgaggtttatgttgttaaaccagcatcgagaagttataggaaacacaaaagcctttgacgggaccatcctctatttaccaatgaagcttgagcttaatgaacttcgtctgaaatctaagcgtgtcacagatgaagcagatatcgttgtgttgatcaggttcacaaaagcaattgatcctgcctcttcccagctgatacctttttataacacagtattgaaacggtgtatgagactccttgatatgtgccccgttggccgaaactattatgaccctacatctccaaaaaccattgaaaagctgcaactgattttgtggcctgggtatgtcactgctatcaagaaatttgaggatggtttgatgttaaatattgatgtatcgcataaggttctgcgtcaggatacggccaaacatgtaatggttgaagcctacaaaagatccccaaaccaatatcgtgatgcttgtgtaaaggagttagttggagcgattgtgcttacgcggtacaacaataaaaactaccgtgttgatgatatagcgtgggacatgacaccctcaagctcttttaccaattcaaaaggtgacaagctcacttttgttgaatactacaaagttcaatacaaaatagaaatcactgacttgaagcaaccaatgttggtacatcgacctaaaaagcaaacgcagcgagatttcaagagaaatgaaggggaagattattgcatttgtttggtccctgagttgtgctaccttactggattatccgataagctgagatctgatttccgagcgatgcgagagatacgtgacaacacatcctttgatccaacccgacgaaatgcttgtctggaggagtttcttaagcgagttaacatgaacaccaatgcaaagaacgaactactcagatggggtcttgaactcgacatgaaaacttgctccactttttctcgctctcttccttctgaaaagatcatggtaggaagaaaccaagtgttctcatgcggtccagatgcagattttggaagagaagttacgcgctcacctgttattactccaatcccaattaataactggctacttgttttcgtaaagagagattcgaacaaggctgaaaatttctttcaaaagatgatggaatgtacaagaaagttggggattgatctcagcaagcccagatttcttcaattgaatgatgacagaacaacaagctataaagatgccatctctcaatcactgaacccatccacacagctggtggtgtgtatattccctacttcccgtgatgatagatacaacgccataaagaaattatgctgcgtcgacatgcctgtcccttcgcaagtcatcatttcacgcactttacccgatgacgcaaaaatgggaaagtttcggtcagtgacaatgaaaattgctcttcagatcaactgtaagcttggtggggaactctggacagttgacatccctcttaaaggacttatggtttgtgggattgacgtttatcatgatccattaaaaagaggaaaatctgttgcagcatttattgcaagttctaacaggttaatgtctacttggttttcaaaagcaatcattcaacaacctcaccaagagttaatcgatagtttgaaacagtgctttgtaaatgcattgaagaattactatgagctaaatcatgctttgccagagcgtatcgttattttccgagatggagtcggtgatggtcaactaaacatagtggctgaacacgaagtggttcaacttcaatcatgttttgaaatgttctcaaaggttaagggggataaatataacccaatgctaacagttgtggtagtttctaaacgcatcaacacaaagtatttttcacttgattcgaaaggtttgtctaatccctgcccaggctctgtgttagatcatactgtgacacgaccaaactggccggattacttcttggtgtctcagcacgtaagacagggtaccgtctcacctacacattacattgtagtcagtggtcatgaacatttaaaacccgatcacatgcaacgtctgtcatataaactcacacacatgtactacaactggccaggaaccgtaagagtgcccgcaccttgccaatatgctcataaacttgcttaccttgttggtcaaagccttgggcagcaccctgcaccgcaactttgtaacaagctgttttatttataattgtgtagccggtatattaaaatgtgttaccgatttttgatggtttgcctgtatttgctttctatgccagcaaattttgtgtaagttatccaaaacaaggcgtgccaaattattgaatataagcttcagccatttaaaaaactgttatttggagttcaaattttacctgcttcaagtttttttaactgccgagtaactacacacacaccatatttaatatgcattgttttataattttaatacatcgtgctttttcaacatttttatctcaatgtcttctacaatttgcttaatgtttaattcaatagtatcattcagtacaaagtcaacaattcaaaacataaccaacatttttcatcaaatgtaaatgagacatgctgttaaatatatgggaactttatttaataatgtggtcgaatgcaacagtataactggacactaaaacataatgtcactgctgtaactttgttgactttcaattgtctgaacacaaaccgttccattttctatttctttgttcgttctttatatttcacagattgcatgttcgcagcatttataatttaaaatatcatttggacgattttgcaataatttttttataggtaaaattgccaatcctaattttatgtcaccaaatttctttattgcagaagagtttctcaattaacgctatgtttatataatatttcaaaatctgtcaccttgaaaatacaaaaacaagcaagatctttttaaagttatttggtaatttacgctggttatgctaaaaccggtaccaagacaatggctgccgtgttcaatgagttcggctacaatacgtacgacttctttgagaactcgttttacctcggtaaggattgggtaaaaataatcaacgaaggtggaaccgtggaagattttcgaagaatgtacaaaggtgttgattcgccaacttttattttctgggaggaaatatcagaagcttacccggaagctaagataatcttttctgtgcgggatgaagaatcctggcttcgtagtttggagaagcaagtacattctcatgtgtctgaaccgaagtatcttttaatgcaaatgctctcttactcaggatggggcctctttaggtttactcaagctactgctcttgtggttatcggtgccgcaataaagtggccttggggaccagtaaattataacccaacattatggaagagaatttataggaatcacaacagcaacgttctgcaaaacgcaccaaaagataaactgttgatagtcaactttaaagacggttggggaccaatctgtgaattcctgggggagaaagttccagacaagcccttcccgcatgcgaacaagggagcatcgcttataaaggaatcgatggaaagtcacccgatcgtgataaaaatgctcagagagacaatgtttactctcggagttcttactctcattggggcgtatggtgggtacaaggtttaccaaaacccagcaagtataagtggttggttcaataatacgatgataaggtttaagttctggtaactcgtaatcctaattttaaaagcagagtctctaggttacagtgttataattttttgaaagttctttgtttactaccaaacgggacgagaaaatagaacgaaaaggtgtcccatcttccccactctactatataaaactccaatacattaacatctgccagctttactagtattgtgcttgtcaggaacttgagagctcaagtgtgtctgcataagttggtaattcaaagttcgtagatgtattgtttgcattaattgtctagctctttctacgaagttagatttgtttacatgtagaaatcataaaggccttgtaggcctatactgcttactgtttgtcattgtcaacttattgttcgccagtgctgtaaaataaaactgctatgggctataacgta
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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