LOCUS       XM_002129739            2604 bp    mRNA    linear   INV 22-OCT-2018
DEFINITION  PREDICTED: Ciona intestinalis ribosome biogenesis protein
            bop1-A-like (LOC100177341), mRNA.
ACCESSION   XM_002129739
VERSION     XM_002129739.5
DBLINK      BioProject: PRJNA187185
KEYWORDS    RefSeq.
SOURCE      Ciona intestinalis (vase tunicate)
  ORGANISM  Ciona intestinalis
            Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia;
            Cionidae; Ciona.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_020171.2) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Oct 22, 2018 this sequence version replaced XM_002129739.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Ciona intestinalis Annotation
                                           Release 104
            Annotation Version          :: 104
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.1
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2604
                     /organism="Ciona intestinalis"
                     /mol_type="mRNA"
                     /db_xref="taxon:7719"
                     /chromosome="6"
     gene            1..2604
                     /gene="LOC100177341"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 66 ESTs, 4 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 202 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:100177341"
     CDS             98..2380
                     /gene="LOC100177341"
                     /codon_start=1
                     /product="ribosome biogenesis protein bop1-A-like"
                     /protein_id="XP_002129775.1"
                     /db_xref="GeneID:100177341"
                     /translation="

MKKKRPLSELQTSILGENEENLFTNKPIEEEESENEEENEENVAEESESDYSGLGEDEDSDSDDSMLGEEDSDVEEGEEVNEKSTEPTQHTEEKKETSEVVAKINEKLEKQTEDNDNDTSDEEDSRNTVGNIPMQWYEDFPHIGYDLDGKKIAKPIRNNDELDKFLDKMDNPEYWKTIHDKTTGRDHVLTEEELSLVNRVQRGYFYDAKYDPHEPYVDFFTNEKMLHPINNAPAHKRSFTPSLVEKRKVGKLVHAIKMGWLKVGKPKQDDEEQIKFYDLWADVNDDKKSHSELARQKMHIPAPKPALPGHEASYNPPPEYLPTQEEIDQWKEDDPEDRKFDFIPEKHDALRRVPQYPKFIQERFARCLDLYLCPRQRKMKFNVNPDDLIPDLPKPRDLRPFPTVQALCYRGHQAMVRTISVDTTGQWLASGSDDGVVRIWEVQTARCVRELKIDEKEAIKCISWCPNTSVCLLAITVDTKIIILNPYIGDRLVAQATDSLLQSYEPNEEEEEQSGSKSEKSNSLIPPWRSVETGLEYQDGYRLVITHPKAVSKVTWHAKGDYFAATVPNNSNAQVFLHQLTKRRSQNPFSKCKGAVQSVLFHPNRPFFFVATQQYVRVYNLVKQQLSKKLLSNAKWISSIAIHPGGDNLIVGSYDCRLSWFDMDLSSKPYRTMRYHKRAIRACCFHRKYPLFASAGDDGSIVVSHGMVYSDLMQNPLIVPVKVLKGHKVDRNLGVLDCCFHPHQPWIFSSAADNTIRLFS"

     misc_feature    506..1303
                     /gene="LOC100177341"
                     /note="BOP1NT (NUC169) domain; Region: BOP1NT; smart01035"
                     /db_xref="CDD:214986"
     misc_feature    1322..2377
                     /gene="LOC100177341"
                     /note="WD40 domain, found in a number of eukaryotic
                     proteins that cover a wide variety of functions including
                     adaptor/regulatory modules in signal transduction,
                     pre-mRNA processing and cytoskeleton assembly; typically
                     contains a GH dipeptide 11-24 residues from...; Region:
                     WD40; cl29593"
                     /db_xref="CDD:453027"
     misc_feature    order(1331..1333,1385..1387,1397..1399,1415..1420,
                     1454..1456,1460..1462,1577..1579,1589..1591,1607..1612,
                     1733..1738,1787..1789,1802..1804,1829..1834,1871..1873,
                     1922..1924,1952..1957,1991..1996,2048..2050,2060..2062,
                     2078..2083,2120..2125,2174..2176,2189..2191,2222..2227,
                     2273..2278,2342..2344,2354..2356,2372..2377)
                     /gene="LOC100177341"
                     /note="structural tetrad [active]"
                     /db_xref="CDD:238121"
     misc_feature    1346..1459
                     /gene="LOC100177341"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1472..1588
                     /gene="LOC100177341"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1751..1870
                     /gene="LOC100177341"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1883..1990
                     /gene="LOC100177341"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    2009..2119
                     /gene="LOC100177341"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    2135..2272
                     /gene="LOC100177341"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
ORIGIN      

ttttttgtattttgtacgtaaaagctaaaactaatcttatgatataaaatttagtatttaccagattaatctacgtttgttacataaaactacaagtatgaagaaaaagagaccactgagtgaattacagacctctatactgggagagaatgaggaaaacttattcacaaataagcccatagaagaagaagagtcagagaatgaagaagagaacgaagaaaatgtggcagaagagagcgagagcgattattctggacttggtgaggatgaggactctgattcagatgactctatgttgggtgaagaggatagtgatgtagaagaaggggaagaagtgaatgagaaatcaacagagccaacacaacacacagaagaaaaaaaggaaacaagcgaagttgtggcaaaaataaatgaaaaacttgagaaacaaactgaagataatgataatgacacttcagatgaggaggacagcagaaacacagttggtaacatacccatgcaatggtatgaagactttcctcatattggttatgacttggatgggaaaaagatcgcaaaaccaattcgaaataacgatgaattggataaatttctcgataaaatggacaacccagaatactggaaaacgatccatgataaaacaacagggagagaccatgttttaactgaagaggaattgagtttggttaacagagtacaacgaggttatttctacgatgctaaatatgaccctcatgaaccatacgttgactttttcaccaatgaaaaaatgttacacccaataaataacgcccctgctcataaaagaagtttcaccccttctctggtggaaaaacgaaaagttggcaagcttgtccatgctattaaaatgggttggctaaaagttggcaagcctaagcaagatgatgaagaacaaatcaagttctatgatttatgggcagatgtgaatgatgataaaaagagccatagtgaacttgcgagacagaaaatgcacattcctgcacctaaaccagcactgccagggcatgaagcatcttataacccacccccagagtatttgccaactcaagaagagattgaccaatggaaagaagacgacccagaagaccggaagtttgatttcatccccgagaagcacgatgcattgagaagagttcctcaatatcccaagttcatccaggagagattcgcccgatgcctcgatctttatctgtgtcctcgtcagaggaaaatgaagtttaacgtgaaccctgatgaccttatccctgacctccctaaaccccgtgaccttcgacctttccccaccgtacaagctctgtgttacaggggtcatcaagccatggtccgtactatatcggtggatactacaggacaatggttggcatcaggttctgacgatggtgtagttagaatatgggaagtacaaacagctcgttgtgtgcgtgaacttaaaatagatgaaaaggaagcaatcaaatgtatatcatggtgtcctaataccagtgtgtgtcttctagctatcacagttgacacgaaaattataattttgaacccctacattggagatcgactggttgcccaggcaaccgacagcctcctccaatcatatgagccaaatgaggaggaagaggagcagagtgggagcaagagtgagaagagcaattccctcattcctccctggagatctgtagaaacaggattagaatatcaagatgggtacaggcttgttataacacatccaaaagcagtatccaaggttacatggcatgccaagggcgattactttgcagccaccgtgcccaacaattccaatgcgcaagtattcttgcaccaactcactaaaagaaggtctcagaatcccttcagtaaatgcaagggagcagtacagagcgtgctgtttcatccgaaccgacctttcttctttgtggcaacgcagcaatacgtacgtgtctacaacttagtaaaacagcagctttcgaaaaaactcttgtcaaacgcaaaatggatttcatcaattgccattcatccaggaggtgataacttgatcgttgggagttacgactgccgtctttcatggtttgacatggacctatcttccaagccataccgcacaatgcgttatcataaacgcgctatacgtgcgtgttgcttccatcgaaaatatccactttttgcttcagctggtgatgatgggtcaattgtagttagccatgggatggtatacagtgatttaatgcaaaatccgctaatcgtgccggttaaagtactgaaaggtcacaaagtagatcgtaaccttggagtcctggattgttgtttccatcctcaccaaccatggatcttctcatccgcagcagataatacgattcgtcttttctcttgagtttaaagctcaactcttgggttgtgctgtatacctgttaaaacgctagtttttcttgggtgtcttaacgccaaaatccgtcttgagtgcaagtttttcttgtgctttgctaaaaaaagcaaaaagacgtaattctgaagcgtttttccactttctagtgtgactcgcttagttttactgtctccttgtttaaaaatattaaaagaattaatctgcggtcggta

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