LOCUS       XM_002129655             806 bp    mRNA    linear   INV 21-JAN-2026
DEFINITION  PREDICTED: Ciona intestinalis small ribosomal subunit protein uS7
            (LOC100186730), transcript variant X2, mRNA.
ACCESSION   XM_002129655
VERSION     XM_002129655.4
DBLINK      BioProject: PRJNA1397229
KEYWORDS    RefSeq.
SOURCE      Ciona intestinalis (vase tunicate)
  ORGANISM  Ciona intestinalis
            Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia;
            Cionidae; Ciona.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_136105) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2026 this sequence version replaced XM_002129655.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_018327825.1-RS_2026_01
            Annotation Pipeline         :: NCBI Eukaryotic Genome Annotation
                                           Pipeline (EGAP)
            Annotation Software Version :: 10.5
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 01/16/2026
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..806
                     /organism="Ciona intestinalis"
                     /mol_type="mRNA"
                     /db_xref="taxon:7719"
                     /chromosome="13"
                     /geo_loc_name="France:Roscoff"
                     /collection_date="2018-11-26"
     gene            1..806
                     /gene="LOC100186730"
                     /note="small ribosomal subunit protein uS7; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 ESTs, 1900 long SRA reads, 32 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 64 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:100186730"
     CDS             154..768
                     /gene="LOC100186730"
                     /codon_start=1
                     /product="small ribosomal subunit protein uS7"
                     /protein_id="XP_002129691.1"
                     /db_xref="GeneID:100186730"
                     /translation="

MEEDYEADVIVAEAPEVKLFGRWTTSDVQINDISLTDYLPVKDKYSKYLPHSSGRYQIKRFRKAQCPIVERLVNSMMMHGRNTGKKLLTVRIIKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQSVDVSPLRRVNQAIWLLCTGAREASFRNIKTIAECLADELINAHKGSSNSYAIKKKDELERVAKSNR"

     misc_feature    205..765
                     /gene="LOC100186730"
                     /note="Eukaryota homolog of Ribosomal Protein S7; Region:
                     uS7_Eukaryote; cd14867"
                     /db_xref="CDD:271246"
     misc_feature    order(205..207,292..300,304..315,412..414,424..426)
                     /gene="LOC100186730"
                     /note="S9 interface [polypeptide binding]; other site"
                     /db_xref="CDD:271246"
     misc_feature    order(304..306,310..312,322..333,340..342,364..366,
                     373..375,379..393,403..417,424..426,544..552,556..558,
                     586..588,607..609,628..630,637..639,655..660)
                     /gene="LOC100186730"
                     /note="rRNA binding site [nucleotide binding]; other site"
                     /db_xref="CDD:271246"
     misc_feature    order(436..438,445..450,457..459,655..657,661..666)
                     /gene="LOC100186730"
                     /note="S25 interface [polypeptide binding]; other site"
                     /db_xref="CDD:271246"
     misc_feature    order(541..543,550..552,556..558,763..765)
                     /gene="LOC100186730"
                     /note="S11 interface [polypeptide binding]; other site"
                     /db_xref="CDD:271246"
     polyA_site      806
                     /gene="LOC100186730"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

tgatgtattttggacgtttttagctaaaattgcacccgttttttggtatttttcgttaaaaatgatgaccagatagtgtagggatacgttatataattttttaagccaaatttagcccataaactcagactaaatcggcgatacacttttgacatggaggaagactacgaagcagacgttatcgtagctgaagcacctgaggtgaaattgttcggacgatggacaaccagtgatgtgcagatcaatgacatctcacttacggactacttacccgtgaaggacaaatactccaagtatcttccccacagctccgggcgttaccagatcaaacgcttccgtaaagcacaatgtcccattgtggagcgcttggttaactccatgatgatgcatgggcgtaataccggcaagaaactgctgactgttcgaatcattaaacatgcgttcgagattatccatctcttgactggtgaaaacccactccaagtgttggtgaatgcgattatcaacagtggtccacgtgaagattccactcgtattgggcgtgctggtactgtaagaagacagtctgtagacgtatcaccactgcgacgtgtcaaccaagctatctggttattgtgcaccggcgcacgtgaggcttctttccgtaacattaagacaattgctgagtgcttagctgatgaactcattaacgctcataagggctcatctaactcgtatgccatcaagaagaaggacgaacttgagagagtcgcgaaatccaaccgttaaaatgcatcggcattaatggaaataaaatcttaaaccaa

//