LOCUS       XM_002128968            2975 bp    mRNA    linear   INV 22-OCT-2018
DEFINITION  PREDICTED: Ciona intestinalis protein NRDE2 homolog (LOC100177099),
            mRNA.
ACCESSION   XM_002128968
VERSION     XM_002128968.3
DBLINK      BioProject: PRJNA187185
KEYWORDS    RefSeq.
SOURCE      Ciona intestinalis (vase tunicate)
  ORGANISM  Ciona intestinalis
            Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia;
            Cionidae; Ciona.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_020175.2) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Oct 22, 2018 this sequence version replaced XM_002128968.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Ciona intestinalis Annotation
                                           Release 104
            Annotation Version          :: 104
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.1
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2975
                     /organism="Ciona intestinalis"
                     /mol_type="mRNA"
                     /db_xref="taxon:7719"
                     /chromosome="10"
     gene            1..2975
                     /gene="LOC100177099"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 21 ESTs, and 100% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 179 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:100177099"
     CDS             138..2945
                     /gene="LOC100177099"
                     /codon_start=1
                     /product="protein NRDE2 homolog"
                     /protein_id="XP_002129004.1"
                     /db_xref="GeneID:100177099"
                     /translation="

MSLFPSASAIASTSSNDKDKEWLQNKSFKKDAAKALRKHQESLKEELPVVFKEESPIVYSDPSSNHESESGSEQEERQPIEVKPEVNDAGSETIFVDKAADKNNLYFGKPYRVPIPKFYRCVDSCIGLPKHMQIIFKTKKKRKRKYVATDPRYFHKTINDDDTVEVAEDPFKTQTEILNIETRENPTNIEAWMELATLQDRTHGKRVKFANEKKVSILNKAIAANPKNVDLKLKRLSFLENISEDSDREWKNLVFQHPGDRRSWEAYIGHTMSGASFKVHKTLKAFEKCIQTLSSLRFQSFQTEETAAKTENDLLEIFEKLVEFFIESGLVERCVLLLILLMEVNLRTCSCSYVEDVKLFYESGEGILGEKKSSGWKIWSEKHQKGGWSSVVEEEEEEEFVDDLDVDPDLDLTHNWLVMESTRGKRDIYPWRLKQDCEDVGRKVSFEDIKGFIFFTKKVSSRLRLLELFVKTLGARNENVLERNFLLSQPCHLTHALHSTGSLGDISQLKFDCGTQCTDTMLPRTPHHELLCLVLEQLCSNCPTDVKKGVAEIGMDYFVVRATELSKFQGKKAELKKTEKEAKKFAKFALKTDPLNFVVWGKLARVEFLTGKAEDSLKVFQNSLCTCKQLEDALVLCVSYIECFYDSKPESVKPILAALGDGLNFKEVFQNPEKVTGAMLLRGGRGLERLCEDMACLYPSVCCSKKGDLSQFANILCCYAVFLALSSSTNVDKTLKQYISVIRKEFNSGNTQAAMDLKYIHNLRLRLISPCVAQTTQYRNAVLFALDDFPDCPEFALKLCQLEVGSAITSTARKLFSPATSIAAAFYSIYFELLSHQRTAVHGNYVNPSRVINLLERAVTKHNHSVLLWRLLIHFSKGSENVLTRAIFACPWSKSLACDQIRFKPDKISDVIKNMHDIGIRIRTPIEEVQLLLAM"

     misc_feature    420..662
                     /gene="LOC100177099"
                     /note="MTR4-interacting domain (MID) found in nuclear
                     exosome regulator NRDE2 and similar proteins; Region:
                     NRDE2_MID; cd22200"
                     /db_xref="CDD:412062"
     misc_feature    order(420..440,447..452,462..467,471..473,477..521,
                     528..536,540..548,567..575,585..590,594..599,606..626,
                     651..662)
                     /gene="LOC100177099"
                     /note="MTR4 binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:412062"
     misc_feature    669..1559
                     /gene="LOC100177099"
                     /note="necessary for RNA interference; Region: NRDE-2;
                     pfam08424"
                     /db_xref="CDD:429988"
ORIGIN      

gaagtatataaactttgtctctgtcacgcttggtcacacttacataagtatcagcagtcagcacctccacagtacgaagtctgaaacgtttgtagtacgtcttgtacctcacgttttaagaacaaaattcatttaacatgagtttgttcccttctgcgtctgctattgcttcaacatcaagtaatgataaagataaggaatggttgcaaaacaaaagcttcaagaaagatgctgctaaagcattaagaaaacaccaagaaagtttaaaagaagaactaccagttgtatttaaagaagaatcccccattgtatattctgacccttcaagtaaccatgaaagtgaatctgggtcagaacaagaagaacgccaaccaattgaagtaaaacctgaagttaatgatgccggtagtgaaacgatatttgtggataaagctgctgataagaacaacttgtattttggaaagccatatagagtgccgattccaaagttttaccgctgtgttgattcttgcattggactccccaagcatatgcaaattattttcaaaacgaagaaaaaaaggaaacgtaaatatgttgcaacagatccaagatattttcacaaaactataaacgacgatgatacagtagaggtagctgaagatccttttaagacacagactgagatattaaatattgaaactcgagaaaatccaaccaacattgaagcttggatggaacttgctacactacaggacagaacgcatggaaaaagagtgaaattcgcgaatgagaaaaaagtttcaatcctcaacaaagctattgctgccaatcctaaaaatgtagatcttaaacttaagagattatccttccttgaaaatatatccgaagattctgacagggaatggaagaatcttgttttccaacatccaggagacagaagatcatgggaggcttacatcggacacacaatgagcggagcttcatttaaagtacacaaaactcttaaagcttttgagaaatgtattcaaacattaagttcattaagattccaaagttttcaaacagaagaaactgctgcgaaaactgaaaatgacttgctggaaatttttgaaaaattagtcgaattttttatcgagagcgggttggtggagaggtgcgtgctcctcctcattttactcatggaagtcaacctccggacttgctcctgctcctatgtggaggatgtgaagctcttctatgagagcggggaggggattcttggcgagaaaaagtcttccggttggaaaatatggtccgaaaaacatcaaaagggaggatggtcctctgtggtggaggaagaagaagaagaggagtttgtggatgatctggatgttgatccggaccttgatcttactcataactggttggtgatggagtccacaagaggaaagagagacatttatccttggagattgaaacaagattgcgaagacgtgggcagaaaagtatcttttgaagatatcaaaggttttattttctttacaaaaaaagtttcaagtcgattacgtttgctcgaattgtttgtgaaaaccttgggggctaggaatgagaatgttctggaaagaaactttttactgagccagccctgccacctaacacatgcattacatagcactggctcattgggtgatatatcccagcttaagtttgattgtgggacacaatgtacagacactatgctaccaagaaccccacaccatgaactgttgtgtttggtgctagaacaactgtgttcaaactgtcccactgatgtgaaaaaaggtgttgccgaaataggaatggattattttgtcgtaagggctacggaattatctaaatttcaagggaaaaaagcggaattaaaaaaaactgaaaaagaagccaaaaagtttgcgaaattcgctcttaaaacggacccacttaattttgttgtatggggaaaattagcccgtgtggaatttcttacaggaaaggcagaggacagtcttaaagtatttcaaaactctctatgtacatgtaagcagctggaagatgccctagtcctttgtgttagttatattgaatgcttttatgactcgaaacctgaatcagtaaaacccatattagctgctcttggagatggactcaattttaaagaagtttttcagaatccagagaaagttacaggagcaatgttgttgagaggtggcagagggttggaaagattgtgtgaagatatggcatgcctttatccttctgtctgttgttctaagaagggggacttaagtcagtttgccaacatcttatgttgctatgccgtatttcttgctctgtcttcttcaacaaacgtggacaagacattgaaacaatatatcagtgttataagaaaagaatttaattcaggaaacacacaagccgcaatggacttaaaatacattcataatctaagacttcgtctgattagtccatgcgttgcacaaactactcaatatagaaatgctgttctgtttgcattggatgactttcctgattgccctgaatttgctctaaaactttgtcagcttgaagttggttctgcaattacgagcacagccagaaaacttttcagcccggccacaagcattgctgcagcattttactcgatatatttcgaactgttgtctcaccagcgtactgcagtgcatggtaactatgtcaacccatcacgcgtgatcaatttgcttgaaagggcggtcacaaaacacaaccacagcgttttactatggagattgcttatccatttttcaaagggcagtgaaaacgttttaacacgagcgattttcgcatgcccatggtcaaaatcactcgcatgtgaccaaatccgatttaaaccagataaaataagtgatgtgataaaaaatatgcatgatatcggtattagaattcgtactcctattgaggaagtccaactactgttagccatgtaaactttaataataaatttttttaaagtgaaa

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