2024-05-02 08:11:31, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_002121178 1158 bp mRNA linear INV 22-OCT-2018 DEFINITION PREDICTED: Ciona intestinalis homeobox protein MSH-B (LOC778698), mRNA. ACCESSION XM_002121178 VERSION XM_002121178.4 DBLINK BioProject: PRJNA187185 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_020177.2) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Oct 22, 2018 this sequence version replaced XM_002121178.3. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Ciona intestinalis Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1158 /organism="Ciona intestinalis" /mol_type="mRNA" /db_xref="taxon:7719" /chromosome="12" gene 1..1158 /gene="LOC778698" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 58 samples with support for all annotated introns" /db_xref="GeneID:778698" CDS 57..932 /gene="LOC778698" /codon_start=1 /product="homeobox protein MSH-B" /protein_id="XP_002121214.1" /db_xref="GeneID:778698" /translation="
MTLNFSIDVILGKTSLDKKSSSNARTQAGQVKATRNNYTVQWRTCKQEPTERRFDKSRSEHTEPQYPYNTFHLQHNRRFDICATKPYQPILQNQAYHNLQGPLRLGDNSSSTSCGAFPLDGSSSDDSDTDVRNRLNDSSEISTGEKSDRLNSSLPTSDTSPQSSKSSSARIGRRLFTGFQILELDKAFSIKPYLTRSERALLAQKVNLTECQIKTWFQNRRTKEKRRGHETDDDDVATSDVITSKPYFPKCTRIPGHGVQVRPTFGPPDKHLQAAIFDYLRRRSHEEISVK"
misc_feature order(564..578,582..584,633..635,651..653,690..692, 696..701,708..713,717..725,729..734) /gene="LOC778698" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(570..572,579..581,699..701,708..713,720..722) /gene="LOC778698" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 573..731 /gene="LOC778698" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" ORIGIN
tgctacaggtattcaaatcaatcgttacagcttgcaggtaacaagacaacagaaaaatgacgttaaacttttctatcgatgttattcttggcaagacatctttagataaaaaaagttcctccaatgctagaactcaagcaggtcaggttaaagcgacaaggaacaattacacagtccagtggagaacttgtaagcaggaaccaacagaacgaagatttgataagagtcgatccgaacacacagaaccgcagtatccatacaacacgtttcatttacaacataaccgaagatttgacatctgcgccacgaaaccgtaccaacctatcctacagaaccaagcttaccacaacctacagggaccattacgtcttggtgataattcatcaagtacatcttgcggtgctttcccactggatggttcctcatcagatgatagcgatactgacgtcaggaatcgtctcaacgattcttctgaaatatcaactggtgaaaagagcgatcgtttaaactcctccctcccaacctctgacacatctccacaatcctcgaaatcatcctccgcccgcattggacgtcgtctcttcacaggtttccagatccttgagctcgacaaagcattttccataaagccgtatctcacacgatccgagagagcactactcgcgcaaaaagtgaatcttacagaatgtcaaatcaaaacctggtttcaaaaccgaagaacgaaagaaaaacgtcgcggtcacgagacggacgatgatgacgtagcgactagtgacgtcatcactagtaaaccgtacttccccaaatgcacaagaatacctgggcacggcgtgcaggtccgacctacgtttggtccacccgataagcatttgcaggccgctattttcgattatttaagaagaagatctcatgaagaaatttcggtcaaataagtttctgttgcaccggcgatgtttagtgtgctgactaataaaagccgcaaatttaaagccacaaattgaaatgccggaaattcgaaacggacaaatattaatagttacgaattttcggctttagatttgcaatcttgcatcttgttataaaatcgttatttttcttttttattcttttattaatcttacctttctttaaaataaacaaacaaaagaagttaggcta
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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