LOCUS       NM_001078492            2230 bp    mRNA    linear   INV 26-JAN-2026
DEFINITION  Ciona intestinalis transcription factor protein (pou-like), mRNA.
ACCESSION   NM_001078492
VERSION     NM_001078492.1
KEYWORDS    RefSeq.
SOURCE      Ciona intestinalis (vase tunicate)
  ORGANISM  Ciona intestinalis
            Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia;
            Cionidae; Ciona.
REFERENCE   1  (bases 1 to 2230)
  AUTHORS   Imai KS, Hino K, Yagi K, Satoh N and Satou Y.
  TITLE     Gene expression profiles of transcription factors and signaling
            molecules in the ascidian embryo: towards a comprehensive
            understanding of gene networks
  JOURNAL   Development 131 (16), 4047-4058 (2004)
   PUBMED   15269171
REFERENCE   2  (bases 1 to 2230)
  AUTHORS   Satou Y and Satoh N.
  TITLE     Genomewide surveys of developmentally relevant genes in Ciona
            intestinalis
  JOURNAL   Dev. Genes Evol. 213 (5-6), 211-212 (2003)
   PUBMED   12736827
REFERENCE   3  (bases 1 to 2230)
  AUTHORS   Satou Y, Yamada L, Mochizuki Y, Takatori N, Kawashima T, Sasaki A,
            Hamaguchi M, Awazu S, Yagi K, Sasakura Y, Nakayama A, Ishikawa H,
            Inaba K and Satoh N.
  TITLE     A cDNA resource from the basal chordate Ciona intestinalis
  JOURNAL   Genesis 33 (4), 153-154 (2002)
   PUBMED   12203911
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AB210645.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AB210645.1, AK112159.1 [ECO:0000332]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..2230
                     /organism="Ciona intestinalis"
                     /mol_type="mRNA"
                     /db_xref="taxon:7719"
                     /chromosome="7"
                     /map="7"
     gene            1..2230
                     /gene="pou-like"
                     /note="transcription factor protein"
                     /db_xref="GeneID:778929"
     exon            1..278
                     /gene="pou-like"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    65..67
                     /gene="pou-like"
                     /note="upstream in-frame stop codon"
     CDS             98..1912
                     /gene="pou-like"
                     /codon_start=1
                     /product="transcription factor protein"
                     /protein_id="NP_001071960.1"
                     /db_xref="GeneID:778929"
                     /translation="

MKPINLDTQSSSDVRYLNLSNIPKSYEDVVNTVLEERQSLSVVEVDKVKGYVVNIENENQDVCDLTLTAHEVGKFATEFRTKRIWLGISIETFHSSFDSWVGEEVKFNIRDFETLDLTMEESIYLLPDLKEWLEQVEKAKAEGDVALAKFLGKDLKAKQRKCLNEKTKAKLMKLYEDTPNPTKKQMQELSKEIMIAEFSIEQWFHKKRRFDKRENRIKARLEAKKKNEERLNKEKNAYWDEKLKNLMSDYYKEKEFNKKLFERLKSEGKRTSKGRKRKLKQTTKETEKKNLMEDKVASATSEDVPPQRNLRERKNRKKYIEDESFNNDEVSVSEMQENIQQQQNDLFSHMSNSQTIEKEENDNKDNPTPHNYSDPLPPVNSIFSRQVTSTIPTSTVTKHISDQNNTTQVCSSQTPVETSPNQIMYPRNISTLCSNMKTTPVRCVIKIPSNTNLKAQQQNLINGQVSGKAKDKEFHKQTLSDMPITLTDTESKFFNSSIPICELVPQISDSTKSNTANTPHISDIGNEIPQQLLKPTPSKVAQDNFKVAGPPKLNCSKTNVLLMVFSQTHHPDISMIQFLSAQLKLSTSSVEKWFEMMRLQNNIS"

     misc_feature    296..508
                     /gene="pou-like"
                     /note="Pou domain - N-terminal to homeobox domain; Region:
                     Pou; pfam00157"
                     /db_xref="CDD:459692"
     misc_feature    <488..1111
                     /gene="pou-like"
                     /note="MAEBL; Provisional; Region: PTZ00121"
                     /db_xref="CDD:173412"
     misc_feature    <1769..1891
                     /gene="pou-like"
                     /note="Homeodomain; Region: HOX; smart00389"
                     /db_xref="CDD:197696"
     exon            279..429
                     /gene="pou-like"
                     /inference="alignment:Splign:2.1.0"
     exon            430..523
                     /gene="pou-like"
                     /inference="alignment:Splign:2.1.0"
     exon            524..645
                     /gene="pou-like"
                     /inference="alignment:Splign:2.1.0"
     exon            646..738
                     /gene="pou-like"
                     /inference="alignment:Splign:2.1.0"
     exon            739..818
                     /gene="pou-like"
                     /inference="alignment:Splign:2.1.0"
     exon            819..881
                     /gene="pou-like"
                     /inference="alignment:Splign:2.1.0"
     exon            882..1190
                     /gene="pou-like"
                     /inference="alignment:Splign:2.1.0"
     exon            1191..1742
                     /gene="pou-like"
                     /inference="alignment:Splign:2.1.0"
     exon            1743..1798
                     /gene="pou-like"
                     /inference="alignment:Splign:2.1.0"
     exon            1799..2214
                     /gene="pou-like"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

ctaacgcatgtgcgtatagtgttcgtttttaaggtttgtgagtatagccgaaagtgtgtgtaaataggaatcttgtagctgtgacatttccaccaatatgaagcctatcaatttggatacccagtcgtcaagtgacgtgcgatatttaaatttgtccaatatccctaaaagttatgaagatgtagtaaatactgttttggaagaacggcagtcactttctgtggtcgaagtggataaagtgaaaggatatgttgttaatattgaaaacgagaatcaagatgtttgtgacctaacattaactgctcacgaagttggaaagtttgcaacagaattccgaacaaagagaatttggcttggaatctccattgaaactttccattcatcttttgactcctgggttggcgaagaagtgaagttcaacattagagactttgaaacattggatttaaccatggaagaatcgatttacttactgccagatctaaaagagtggttggaacaagttgaaaaggctaaggcagagggtgatgtggctcttgccaaattcttgggtaaagatttaaaagcaaaacaacggaaatgtttgaatgaaaaaaccaaagcaaaactcatgaaactgtacgaagacacacctaatccgacaaagaaacaaatgcaagagctatcaaaggaaataatgattgcagagttctccatagaacagtggttccacaaaaagaggagatttgacaagagagagaatcgtataaaagctagattggaggcaaagaagaaaaatgaagaacggttaaacaaggaaaagaatgcgtattgggatgaaaaattgaaaaatctgatgagtgattactacaaggaaaaagaatttaataagaaattgttcgaaagactaaaaagtgaaggaaaacgaacttcaaaaggtagaaaacggaaattaaaacaaacaaccaaagaaacggagaagaaaaacttaatggaggacaaagttgcttctgcgacctctgaggatgttccaccacaaagaaacctccgggaaagaaaaaatcggaaaaaatatattgaagatgaatcttttaataacgatgaagtttccgtgtcagaaatgcaagaaaatatacaacagcaacaaaatgacctattttctcacatgtctaattcacaaactattgaaaaagaagagaacgataataaagataatcccactccccacaattattccgatcctctgcctcccgtaaacagcatatttagtagacaagtcacttctacaataccaacttccactgtgaccaaacatattagtgatcaaaacaataccacccaagtctgctcatctcaaacaccagttgaaaccagtccaaaccagatcatgtaccctagaaacatcagcactttgtgttcgaacatgaaaactactcctgtaagatgtgtaataaaaatcccatcaaacactaacttaaaagctcaacagcaaaacctgataaatggccaggtatcaggtaaagcaaaagacaaagaattccacaagcaaactcttagtgacatgccaataacactaacagatacagagtcgaagttttttaatagttccattccaatttgtgagcttgtaccacagatttctgacagtacaaaatcgaatacagcaaatactccacatatatcagatattgggaacgaaattccccaacaacttttaaaacccacaccctcaaaggttgctcaagataactttaaagttgcaggtccgccgaaattgaactgctcaaaaaccaatgttcttttgatggtcttcagccagacacaccatcctgatattagtatgatccaattcttatcagcacaacttaaattaagcacctcatccgtagaaaagtggtttgaaatgatgagattgcaaaacaacatctcttagtccagctaggcatttgcctatgttgaatccgcaagcgttgcttactttatttatattaaaatactggtcaatactgttattttattacagtgggcgtaatattcatgcttcgaaaaactttcttttggataaatttcctgttgagaaataagaagaaaattactgtttttttttattttgttacgctgtgatcatattttttcataacttttgttttaaatttacactgcccatgatgtgccattgtactttcgttgagtttttctgttttattgttcacatatacacaatatcttcatcaaaaaaaaaaaaaaaaaa

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