2024-05-02 12:46:16, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001032422 1698 bp mRNA linear INV 04-MAY-2019 DEFINITION Ciona intestinalis homeobox transcription factor Pax1/9 (pax1/9), mRNA. ACCESSION NM_001032422 VERSION NM_001032422.1 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. REFERENCE 1 (bases 1 to 1698) AUTHORS Satou Y, Kawashima T, Shoguchi E, Nakayama A and Satoh N. TITLE An integrated database of the ascidian, Ciona intestinalis: towards functional genomics JOURNAL Zool. Sci. 22 (8), 837-843 (2005) PUBMED 16141696 REFERENCE 2 (bases 1 to 1698) AUTHORS Imai KS, Hino K, Yagi K, Satoh N and Satou Y. TITLE Gene expression profiles of transcription factors and signaling molecules in the ascidian embryo: towards a comprehensive understanding of gene networks JOURNAL Development 131 (16), 4047-4058 (2004) PUBMED 15269171 REFERENCE 3 (bases 1 to 1698) AUTHORS Satou Y and Satoh N. TITLE Genomewide surveys of developmentally relevant genes in Ciona intestinalis JOURNAL Dev. Genes Evol. 213 (5-6), 211-212 (2003) PUBMED 12736827 REFERENCE 4 (bases 1 to 1698) AUTHORS Satou Y, Yamada L, Mochizuki Y, Takatori N, Kawashima T, Sasaki A, Hamaguchi M, Awazu S, Yagi K, Sasakura Y, Nakayama A, Ishikawa H, Inaba K and Satoh N. TITLE A cDNA resource from the basal chordate Ciona intestinalis JOURNAL Genesis 33 (4), 153-154 (2002) PUBMED 12203911 REFERENCE 5 (bases 1 to 1698) AUTHORS Ogasawara M, Wada H, Peters H and Satoh N. TITLE Developmental expression of Pax1/9 genes in urochordate and hemichordate gills: insight into function and evolution of the pharyngeal epithelium JOURNAL Development 126 (11), 2539-2550 (1999) PUBMED 10226012 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AB020762.1. ##Evidence-Data-START## Transcript exon combination :: AB020762.1, AB210627.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN08516546 [ECO:0000348] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..1698 /organism="Ciona intestinalis" /mol_type="mRNA" /db_xref="taxon:7719" /chromosome="11" /map="11" gene 1..1698 /gene="pax1/9" /gene_synonym="Ci-Pax1/9" /note="homeobox transcription factor Pax1/9" /db_xref="GeneID:445592" exon 1..124 /gene="pax1/9" /gene_synonym="Ci-Pax1/9" /inference="alignment:Splign:2.1.0" CDS 22..1293 /gene="pax1/9" /gene_synonym="Ci-Pax1/9" /codon_start=1 /product="homeobox transcription factor Pax1/9" /protein_id="NP_001027594.1" /db_xref="GeneID:445592" /translation="
MINMQTATQNQSVGFSSPLQNPGMVSMMPTSAASNQTFGEVNQLGGVFVNGRPLPNALRLRIIELAQLGIRPCDISRQLRVSHGCVSKILARYNETGSILPGAIGGSKPRVTTPGVVNAIKDYKVRDPGIFAWEIRDRLLSDAVCDKYNVPSVSSISRILRNKIGNVLHPNNPLNPNYVPISNIENSTPPQSTNMRPTYNSPIYNHYMVPPTGKPNMPNAPPTIRGSPMPCHPFYSHSVTEILRGSRFDQPQLQGTAPSNSMTSESISVAPPNGSYHHQLLPVSVPSVIPKLEEWNNMTPYGVPPPTQVTTGHLNGGEKSSPVSRDITSLQQSPTSEENRSAHPLSTLYVTPPANTPYVTSAPQMANNSHHYVTPGLHSIVXPSRLAATIFTDERCGPRLNRKPGTPEECTQLTKWRRTTRIP"
misc_feature 136..513 /gene="pax1/9" /gene_synonym="Ci-Pax1/9" /note="Paired Box domain; Region: PAX; cd00131" /db_xref="CDD:238076" misc_feature order(145..150,163..165,169..177,181..183,196..198, 232..234,238..240,265..267,274..276,280..285,295..297, 322..342,346..357,412..420,475..477,481..486,493..495, 502..504) /gene="pax1/9" /gene_synonym="Ci-Pax1/9" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238076" misc_feature 427..>1140 /gene="pax1/9" /gene_synonym="Ci-Pax1/9" /note="Sec24-related protein; Provisional; Region: PTZ00395" /db_xref="CDD:185594" exon 125..784 /gene="pax1/9" /gene_synonym="Ci-Pax1/9" /inference="alignment:Splign:2.1.0" exon 785..1035 /gene="pax1/9" /gene_synonym="Ci-Pax1/9" /inference="alignment:Splign:2.1.0" exon 1036..1319 /gene="pax1/9" /gene_synonym="Ci-Pax1/9" /inference="alignment:Splign:2.1.0" exon 1320..1698 /gene="pax1/9" /gene_synonym="Ci-Pax1/9" /inference="alignment:Splign:2.1.0" polyA_site 1698 /gene="pax1/9" /gene_synonym="Ci-Pax1/9" /note="18 a nucleoties" ORIGIN
gttagttacaaagttattattatgataaacatgcaaaccgccacacagaaccagtcggttgggtttagttcgccgttacaaaaccctggcatggtttccatgatgccaacatcagctgcaagtaatcaaactttcggggaggtaaaccaactcggcggggtatttgtgaacggacgaccgctgcccaacgctctaagactccgaataatcgagcttgctcaactggggattcggccttgcgacattagtcggcaactacgggtctcacatggctgtgtaagcaagatactagcccgttataatgagacaggctcgatcttaccaggagcaatcggtggtagcaaaccaagagtcacaacacctggtgttgtgaacgcgataaaggattacaaagtcagagaccctggtatatttgcatgggagatcagggaccgccttctaagcgacgcagtttgcgataaatacaatgtcccatcagtaagttccatcagccgaatattaaggaacaaaatcggaaacgtccttcacccaaacaatcctctcaaccctaactacgttcccatcagcaacatcgagaattcgaccccaccacaaagcactaacatgaggcccacctacaacagcccaatatacaatcattatatggtcccaccaacaggtaaacccaacatgccaaacgccccaccaaccatacgaggttccccaatgccttgtcatccgttctattctcattcagtgacagaaatactgagaggatctcgtttcgatcaaccacagttacaaggaaccgcacccagcaattcgatgacgtcagaatcgatctctgtggcgccacctaacggtagttaccaccaccagttgctcccggtgtctgtaccaagcgtcatccctaaacttgaagaatggaataacatgacgccgtacggtgttccgccccctacacaagttacaacgggacatttaaacgggggagagaaatcgtcacccgtgtcacgtgatatcacgtcactgcaacaatcacccacgtcagaggagaatcgatcggcacatccgctttccactctctacgtcacaccacctgccaacaccccatacgtcacttccgctccacaaatggcgaataattcccaccattatgtgacaccgggcctacattccatcgtatgnccatccaggttggcagcaacaatctttaccgatgaacggtgtggaccccgtcttaacaggaaacccggcaccccagaggagtgtacacagcttacaaaatggaggcgtacaacacggataccctaaactcgctgtctcggctccccaaacaggagacggaaaaaattccggaaatcaaaaactcgaccgtccacccatccattctaatggtcagacgtcatcaacgtgatgtcatatcgatatattatgacgtcataataccttatgaataaggattgtttccattcgcgaattgaatcactgccgccattgctgcctttggtttattatgcaactcagtgaagccaatattgtatctattcactaactagtagataaacaactaacattataccgccatcttatttgtagttttcacttttctgaaactttttttcgaaaccaaatttgattcgacacaaaacttgaaatttaaacagttttttttgcaccgaagccatattatttgtaataataaacaaaaatgttacg
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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