GGRNA ver.2 Help | Advanced search | Japanese    Previous release (v1)

2024-11-23 17:24:16, GGRNA : RefSeq release 226 (Sep, 2024)

Summary:

Results:

Matches are highlighted with green background. Overlapping matches are dark colored.

Caenorhabditis elegans Protein clarinet (cla-1), partial mRNA. (25584 bp)
tccacggaaaatgaaattaccaatacgagtaatcaaacagcaaacatagtaattgatccaggaagtattgattcagaagaaataaacaaattagccgcaaaattagttgaagaatcaattctcaaagcatcacaggaagcagcatcagataaccacgagaaagaaagatcaagtgcaacatcaaaagctgattatgaaagatcatttgatcaagacgtcacttatgaaagatcttcaccgttgcttgaaccaagtgaagaaccagtgatggaatccaaagaaccagaactgacacaagaagagattgatcacattgcaaggatccagagtcttgcagaacaatcatcattcgaacaagcttcaacgattcctgatcgaccacctcttccagcccggcttccgactgtagacgagccgattgtcatctcagaacaacacgaagaagacagatcaagtgcaacatcgggagctgactatgaaagatccttcgatcaagaagtcacgtatgaaagatcttcaccgttgcttgaaccatgtgaagaaccagtgatggaatccaaagaaccagaactgacacaagaagagattgatcatattgca...
position 1741
NM_001307220.4 - Caenorhabditis elegans - NCBI - UCSC - WormBase
Caenorhabditis elegans Protein clarinet (cla-1), partial mRNA. (27002 bp)
tccacggaaaatgaaattaccaatacgagtaatcaaacagcaaacatagtaattgatccaggaagtattgattcagaagaaataaacaaattagccgcaaaattagttgaagaatcaattctcaaagcatcacaggaagcagcatcagataaccacgagaaagaaagatcaagtgcaacatcaaaagctgattatgaaagatcatttgatcaagacgtcacttatgaaagatcttcaccgttgcttgaaccaagtgaagaaccagtgatggaatccaaagaaccagaactgacacaagaagagattgatcacattgcaaggatccagagtcttgcagaacaatcatcattcgaacaagcttcaacgattcctgatcgaccacctcttccagcccggcttccgactgtagacgagccgattgtcatctcagaacaacacgaagaagacagatcaagtgcaacatcgggagctgactatgaaagatccttcgatcaagaagtcacgtatgaaagatcttcaccgttgcttgaaccatgtgaagaaccagtgatggaatccaaagaaccagaactgacacaagaagagattgatcatattgca...
position 1741
NM_001307219.4 - Caenorhabditis elegans - NCBI - UCSC - WormBase
Caenorhabditis elegans Unclassified non-coding RNA ZK1193.9 (ZK1193.9), ncRNA. (133 bp)
AUTHORS Sulson,J.E. and Waterston,R. TITLE Direct Submission JOURNAL Submitted (03-MAR-2003) Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA gaaggcgaccacgtcgtcgccaagaagagattgaagacgacgaatggagcgaaagtagtaaggaggggttgagggggggggaggtcgggatcgagatggcataatgtaggaaccggatggaagagtctaaaag
position 21
NR_070329.1 - Caenorhabditis elegans - NCBI - UCSC - WormBase
Caenorhabditis elegans Cytochrome c oxidase polypeptide VIIc (F29B9.11), mRNA. (333 bp)
Institute at Washington University, St. Louis, MO 63110, USA gatgctgaaccgtgctgtgctctccttggctagaagccaacatgtcatccgtcgctcgcttcacaagggagttgactcgaccccaccactccgtttcacctctgtcagcgagaaggttgccctttacggactcatctgcgtcgctttcatggcatacccaacttccgtcctcttcagacttgatagtcttcgcccaagaccggataatgctctctccccagaagtccaagaagagattgacgcccgtgttgccgcccgcagacagtagaagtaatattatgccacgagccattgtgtagacttttgagaacaacaataaatcgattcttgttt
position 227
NM_001383083.2 - Caenorhabditis elegans - NCBI - UCSC - WormBase
Caenorhabditis elegans Transmembrane protein 144 homolog (K07F5.12), mRNA. (1143 bp)
tgtattggaggatttctttatgcaactggaaatgtattcagtgtgccaattgttgaaggaattgggatgggagttggattcttgatttggactagtcttcagattattgtcggatggggagtggcaagattcgggctgttccaatggattgccccgcagaatgtgaaaaatgatgtgttgaactatattggaattgcattgacaatcgtgagtggagttcttttgatattcgtgaaacacgtggaaacggagccagaaaatgaatatgatgtgaccagcaaggaaatggaacatcaagaagagattgagcaaagactcagcaattcagaaagagattcttcatttgatatggctggtttggcaaagaaattaccttatatccttatggcaatggttcttgcgtgtctacatggtttgatgatgtcaccgattgaatatttgaagcaacagaatccaccaactgatagtttccaagtgtttgactatattttcccattctacacatcagtattcctcttctctacactgtatttcttcgcgtattgtgtaattttgcgtcgaaaagcctacgtggaaaggaatttgataattccatcgatt...
position 523
NM_069368.4 - Caenorhabditis elegans - NCBI - UCSC - WormBase
Caenorhabditis elegans ATP-dependent DNA helicase (F11C3.1), partial mRNA. (1296 bp)
AUTHORS Sulson,J.E. and Waterston,R. TITLE Direct Submission JOURNAL Submitted (03-MAR-2003) Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA atgccatgtcctcactgcccgcaagaagagattgaagcggtgcttgccgtgaaaatgtctcagagtagttttgaagagtttcctgtatctaatgaagccgacaatacagaacatgcaatggaagttataccaacattaaatcaattccaacagccaattgctttagagattgtcaataattggaaaatgcagaagttgcattatattgaagggattagtggaactggaaagacatacttgttaaatgctatttgtggactattcaaaaacttctccctcaacatcgagataatctcgccatgtccatttccaagagaacataagtcaattttaaa...
position 22
NM_061196.4 - Caenorhabditis elegans - NCBI - UCSC - WormBase
Caenorhabditis elegans non-specific serine/threonine protein kinase (prk-1), partial mRNA. (1527 bp)
tctacgtctgcacgtgcatctttagcacagatagctgctcatccatggatggagactgataaaccattttttggtggagacttgacttttgaggaagctcttatggaaatcaaaaatcctcctgtagtgatcgaagacaaagaagctgaggaagaggataatgatctcaacgatgtagtgattctgacgagaagccgtgaaagtcgaactgatttggatgcagaaagtatttgtacaatggtcactgctgttgaagatcgatatgagccatcgattgctgtcaaagagttggagcaagaagagattgttgagacagccattgattcctgagacgtcgtcagcaacgtgtcagtcaacatacagtaatgatgaagatgtgacaatatcggaaaaagttgtatcaccagctcagccactgccaccacctctgtcccctcggaaaggaagccttcaatgcttcgaatcagtaccaagatctcgagattctgttatcagaatgtcacgtcatcgtccacttcaatttgcaattgattcatcatcaccaccgccagctcttgccatttttcaagtcagcccaacagcatctgttggttgattttc...
position 1102
NM_001377565.2 - Caenorhabditis elegans - NCBI - UCSC - WormBase
Caenorhabditis elegans Rhoptry protein (C44C10.11), mRNA. (1570 bp)
gatgaaatgacaacaaacgaaaagtacatcgcttacttaccaacagtggtaaaagttactccagcccacaaaaaacgactattgatgaatgcagagctgaataatttgttcgagaacctccgtactcacaaaactggtccattggatacagagattgacggggccaactttgttgcaatagagaaagatgttgaaccacatctgatccggaagatccagttgcttcctaacggcatgctcaaactaatttggcctgttctacccagaaatgagtacgagagtaattctaacaaccaagaagagattgacgcaacaaaaaaagaactcagcgaaacaaaaaagcaattggaaactgagagacaaaaatcgatagaatcccaacgatttctggaaaaaagctgtaatgaaaaagtttcaaaactggcagtggaaaaccagaaactgaaaaataaaatggcacaaaaatcggacgaaactgattccgcatacaggatgattctagaattgaagaaaaaacatgagcaagaactacaaatgaaaaattcaacaattatgaagttagaagacaatgttaaattcaataacagctccaatgaacaa...
position 454
NM_001383649.2 - Caenorhabditis elegans - NCBI - UCSC - WormBase
Caenorhabditis elegans non-specific serine/threonine protein kinase (prk-1), partial mRNA. (1836 bp)
tctacgtctgcacgtgcatctttagcacagatagctgctcatccatggatggagactgataaaccattttttggtggagacttgacttttgaggaagctcttatggaaatcaaaaatcctcctgtagtgatcgaagacaaagaagctgaggaagaggataatgatctcaacgatgtagtgattctgacgagaagccgtgaaagtcgaactgatttggatgcagaaagtatttgtacaatggtcactgctgttgaagatcgatatgagccatcgattgctgtcaaagagttggagcaagaagagattgttgagacaggcgaaacgacgaatcttatgcgtagcgaatctcgttacgacaatatttcatcgtcctctttctgcgattatgtctcattggtctcctcatcatacgacgatcaattcacttcgacttctgatatctaccaatcggcttgtgaagtgttcccacacacaggctcgtcatcctcactgagcagaagcatgggagcagtcaaatcagcatccgcctataatttagttcggatgcgaaagaaatcgagtattttcaaatcatttgacacagaactcgatccagtttct...
position 1102
NM_001377564.1 - Caenorhabditis elegans - NCBI - UCSC - WormBase
Caenorhabditis elegans non-specific serine/threonine protein kinase (prk-1), mRNA. (2087 bp)
tctacgtctgcacgtgcatctttagcacagatagctgctcatccatggatggagactgataaaccattttttggtggagacttgacttttgaggaagctcttatggaaatcaaaaatcctcctgtagtgatcgaagacaaagaagctgaggaagaggataatgatctcaacgatgtagtgattctgacgagaagccgtgaaagtcgaactgatttggatgcagaaagtatttgtacaatggtcactgctgttgaagatcgatatgagccatcgattgctgtcaaagagttggagcaagaagagattgttgagacaggcgaaacgacgaatcttatgcgtagcgaatctcgttacgacaatatttcatcgtcctctttctgcgattatgtctcattggtctcctcatcatacgacgatcaattcacttcgacttctgatatctaccaatcggcttgtgaagtgttcccacacacaggctcgtcatcctcactgagcagaagcatgggagcagtcaaatcagcatccgcctataatttagttcggatgcgaaagaaatcgagtattttcaaatcatttgacacagaactcgatccagtttct...
position 1359
NM_001276777.4 - Caenorhabditis elegans - NCBI - UCSC - WormBase
Caenorhabditis elegans Muscle M-line assembly protein unc-89 (unc-89), partial mRNA. (17979 bp)
atcagggattctattccaccagagtttactcaaaaacttcgaccacttgaagtcagagagcaggagactcttgatttgaaagttactgtaattggaaccccagtaccaaatgttgaatggttcaaggatgataagccaatcaatattgataactcgcacatttttgcaaaggatgaaggatcaggacatcatactctcacaattaaacaagctagaggagaagatgttggagtctacacctgcaaagccaccaacgaagccggagaagccaaaaccactgcaaacatggctgttcaagaagagattgaagcaccattgtttgttcaaggcctgaaaccatacgaggtggaacaaggcaagccagctgaattggtggttcgtgtagaaggaaagccagagcctgaggttaaatggttcaaggatggagttccgattgctattgacaatcagcatgtgattgagaagaagggagagaatggatctcatactcttgtcatcaaagacaccaacaatgctgacttcggaaagtacacatgccaagctacaaacaaggctggaaaggatgaaactgttggagagctcaagattccaaagtattca...
position 8800
NM_001025817.4 - Caenorhabditis elegans - NCBI - UCSC - WormBase
Caenorhabditis elegans Muscle M-line assembly protein unc-89 (unc-89), partial mRNA. (19833 bp)
atcagggattctattccaccagagtttactcaaaaacttcgaccacttgaagtcagagagcaggagactcttgatttgaaagttactgtaattggaaccccagtaccaaatgttgaatggttcaaggatgataagccaatcaatattgataactcgcacatttttgcaaaggatgaaggatcaggacatcatactctcacaattaaacaagctagaggagaagatgttggagtctacacctgcaaagccaccaacgaagccggagaagccaaaaccactgcaaacatggctgttcaagaagagattgaagcaccattgtttgttcaaggcctgaaaccatacgaggtggaacaaggcaagccagctgaattggtggttcgtgtagaaggaaagccagagcctgaggttaaatggttcaaggatggagttccgattgctattgacaatcagcatgtgattgagaagaagggagagaatggatctcatactcttgtcatcaaagacaccaacaatgctgacttcggaaagtacacatgccaagctacaaacaaggctggaaaggatgaaactgttggagagctcaagattccaaagtattca...
position 10654
NM_001356811.3 - Caenorhabditis elegans - NCBI - UCSC - WormBase
Caenorhabditis elegans Muscle M-line assembly protein unc-89 (unc-89), mRNA. (20769 bp)
atcagggattctattccaccagagtttactcaaaaacttcgaccacttgaagtcagagagcaggagactcttgatttgaaagttactgtaattggaaccccagtaccaaatgttgaatggttcaaggatgataagccaatcaatattgataactcgcacatttttgcaaaggatgaaggatcaggacatcatactctcacaattaaacaagctagaggagaagatgttggagtctacacctgcaaagccaccaacgaagccggagaagccaaaaccactgcaaacatggctgttcaagaagagattgaagcaccattgtttgttcaaggcctgaaaccatacgaggtggaacaaggcaagccagctgaattggtggttcgtgtagaaggaaagccagagcctgaggttaaatggttcaaggatggagttccgattgctattgacaatcagcatgtgattgagaagaagggagagaatggatctcatactcttgtcatcaaagacaccaacaatgctgacttcggaaagtacacatgccaagctacaaacaaggctggaaaggatgaaactgttggagagctcaagattccaaagtattca...
position 10911
NM_001025813.2 - Caenorhabditis elegans - NCBI - UCSC - WormBase
Caenorhabditis elegans Muscle M-line assembly protein unc-89 (unc-89), partial mRNA. (20907 bp)
atcagggattctattccaccagagtttactcaaaaacttcgaccacttgaagtcagagagcaggagactcttgatttgaaagttactgtaattggaaccccagtaccaaatgttgaatggttcaaggatgataagccaatcaatattgataactcgcacatttttgcaaaggatgaaggatcaggacatcatactctcacaattaaacaagctagaggagaagatgttggagtctacacctgcaaagccaccaacgaagccggagaagccaaaaccactgcaaacatggctgttcaagaagagattgaagcaccattgtttgttcaaggcctgaaaccatacgaggtggaacaaggcaagccagctgaattggtggttcgtgtagaaggaaagccagagcctgaggttaaatggttcaaggatggagttccgattgctattgacaatcagcatgtgattgagaagaagggagagaatggatctcatactcttgtcatcaaagacaccaacaatgctgacttcggaaagtacacatgccaagctacaaacaaggctggaaaggatgaaactgttggagagctcaagattccaaagtattca...
position 7381
NM_001356816.3 - Caenorhabditis elegans - NCBI - UCSC - WormBase
Caenorhabditis elegans Muscle M-line assembly protein unc-89 (unc-89), partial mRNA. (21108 bp)
atcagggattctattccaccagagtttactcaaaaacttcgaccacttgaagtcagagagcaggagactcttgatttgaaagttactgtaattggaaccccagtaccaaatgttgaatggttcaaggatgataagccaatcaatattgataactcgcacatttttgcaaaggatgaaggatcaggacatcatactctcacaattaaacaagctagaggagaagatgttggagtctacacctgcaaagccaccaacgaagccggagaagccaaaaccactgcaaacatggctgttcaagaagagattgaagcaccattgtttgttcaaggcctgaaaccatacgaggtggaacaaggcaagccagctgaattggtggttcgtgtagaaggaaagccagagcctgaggttaaatggttcaaggatggagttccgattgctattgacaatcagcatgtgattgagaagaagggagagaatggatctcatactcttgtcatcaaagacaccaacaatgctgacttcggaaagtacacatgccaagctacaaacaaggctggaaaggatgaaactgttggagagctcaagattccaaagtattca...
position 7582
NM_001356814.3 - Caenorhabditis elegans - NCBI - UCSC - WormBase
Caenorhabditis elegans Muscle M-line assembly protein unc-89 (unc-89), partial mRNA. (22326 bp)
atcagggattctattccaccagagtttactcaaaaacttcgaccacttgaagtcagagagcaggagactcttgatttgaaagttactgtaattggaaccccagtaccaaatgttgaatggttcaaggatgataagccaatcaatattgataactcgcacatttttgcaaaggatgaaggatcaggacatcatactctcacaattaaacaagctagaggagaagatgttggagtctacacctgcaaagccaccaacgaagccggagaagccaaaaccactgcaaacatggctgttcaagaagagattgaagcaccattgtttgttcaaggcctgaaaccatacgaggtggaacaaggcaagccagctgaattggtggttcgtgtagaaggaaagccagagcctgaggttaaatggttcaaggatggagttccgattgctattgacaatcagcatgtgattgagaagaagggagagaatggatctcatactcttgtcatcaaagacaccaacaatgctgacttcggaaagtacacatgccaagctacaaacaaggctggaaaggatgaaactgttggagagctcaagattccaaagtattca...
position 8800
NM_001025818.3 - Caenorhabditis elegans - NCBI - UCSC - WormBase
Caenorhabditis elegans Muscle M-line assembly protein unc-89 (unc-89), partial mRNA. (22527 bp)
atcagggattctattccaccagagtttactcaaaaacttcgaccacttgaagtcagagagcaggagactcttgatttgaaagttactgtaattggaaccccagtaccaaatgttgaatggttcaaggatgataagccaatcaatattgataactcgcacatttttgcaaaggatgaaggatcaggacatcatactctcacaattaaacaagctagaggagaagatgttggagtctacacctgcaaagccaccaacgaagccggagaagccaaaaccactgcaaacatggctgttcaagaagagattgaagcaccattgtttgttcaaggcctgaaaccatacgaggtggaacaaggcaagccagctgaattggtggttcgtgtagaaggaaagccagagcctgaggttaaatggttcaaggatggagttccgattgctattgacaatcagcatgtgattgagaagaagggagagaatggatctcatactcttgtcatcaaagacaccaacaatgctgacttcggaaagtacacatgccaagctacaaacaaggctggaaaggatgaaactgttggagagctcaagattccaaagtattca...
position 9001
NM_001356808.3 - Caenorhabditis elegans - NCBI - UCSC - WormBase
Caenorhabditis elegans Muscle M-line assembly protein unc-89 (unc-89), partial mRNA. (22761 bp)
atcagggattctattccaccagagtttactcaaaaacttcgaccacttgaagtcagagagcaggagactcttgatttgaaagttactgtaattggaaccccagtaccaaatgttgaatggttcaaggatgataagccaatcaatattgataactcgcacatttttgcaaaggatgaaggatcaggacatcatactctcacaattaaacaagctagaggagaagatgttggagtctacacctgcaaagccaccaacgaagccggagaagccaaaaccactgcaaacatggctgttcaagaagagattgaagcaccattgtttgttcaaggcctgaaaccatacgaggtggaacaaggcaagccagctgaattggtggttcgtgtagaaggaaagccagagcctgaggttaaatggttcaaggatggagttccgattgctattgacaatcagcatgtgattgagaagaagggagagaatggatctcatactcttgtcatcaaagacaccaacaatgctgacttcggaaagtacacatgccaagctacaaacaaggctggaaaggatgaaactgttggagagctcaagattccaaagtattca...
position 9235
NM_001356815.3 - Caenorhabditis elegans - NCBI - UCSC - WormBase
Caenorhabditis elegans Muscle M-line assembly protein unc-89 (unc-89), partial mRNA. (22827 bp)
atcagggattctattccaccagagtttactcaaaaacttcgaccacttgaagtcagagagcaggagactcttgatttgaaagttactgtaattggaaccccagtaccaaatgttgaatggttcaaggatgataagccaatcaatattgataactcgcacatttttgcaaaggatgaaggatcaggacatcatactctcacaattaaacaagctagaggagaagatgttggagtctacacctgcaaagccaccaacgaagccggagaagccaaaaccactgcaaacatggctgttcaagaagagattgaagcaccattgtttgttcaaggcctgaaaccatacgaggtggaacaaggcaagccagctgaattggtggttcgtgtagaaggaaagccagagcctgaggttaaatggttcaaggatggagttccgattgctattgacaatcagcatgtgattgagaagaagggagagaatggatctcatactcttgtcatcaaagacaccaacaatgctgacttcggaaagtacacatgccaagctacaaacaaggctggaaaggatgaaactgttggagagctcaagattccaaagtattca...
position 9301
NM_001356812.3 - Caenorhabditis elegans - NCBI - UCSC - WormBase
Caenorhabditis elegans Muscle M-line assembly protein unc-89 (unc-89), partial mRNA. (24180 bp)
atcagggattctattccaccagagtttactcaaaaacttcgaccacttgaagtcagagagcaggagactcttgatttgaaagttactgtaattggaaccccagtaccaaatgttgaatggttcaaggatgataagccaatcaatattgataactcgcacatttttgcaaaggatgaaggatcaggacatcatactctcacaattaaacaagctagaggagaagatgttggagtctacacctgcaaagccaccaacgaagccggagaagccaaaaccactgcaaacatggctgttcaagaagagattgaagcaccattgtttgttcaaggcctgaaaccatacgaggtggaacaaggcaagccagctgaattggtggttcgtgtagaaggaaagccagagcctgaggttaaatggttcaaggatggagttccgattgctattgacaatcagcatgtgattgagaagaagggagagaatggatctcatactcttgtcatcaaagacaccaacaatgctgacttcggaaagtacacatgccaagctacaaacaaggctggaaaggatgaaactgttggagagctcaagattccaaagtattca...
position 10654
NM_001356809.3 - Caenorhabditis elegans - NCBI - UCSC - WormBase
Caenorhabditis elegans Muscle M-line assembly protein unc-89 (unc-89), partial mRNA. (24703 bp)
atcagggattctattccaccagagtttactcaaaaacttcgaccacttgaagtcagagagcaggagactcttgatttgaaagttactgtaattggaaccccagtaccaaatgttgaatggttcaaggatgataagccaatcaatattgataactcgcacatttttgcaaaggatgaaggatcaggacatcatactctcacaattaaacaagctagaggagaagatgttggagtctacacctgcaaagccaccaacgaagccggagaagccaaaaccactgcaaacatggctgttcaagaagagattgaagcaccattgtttgttcaaggcctgaaaccatacgaggtggaacaaggcaagccagctgaattggtggttcgtgtagaaggaaagccagagcctgaggttaaatggttcaaggatggagttccgattgctattgacaatcagcatgtgattgagaagaagggagagaatggatctcatactcttgtcatcaaagacaccaacaatgctgacttcggaaagtacacatgccaagctacaaacaaggctggaaaggatgaaactgttggagagctcaagattccaaagtattca...
position 10720
NM_001025814.4 - Caenorhabditis elegans - NCBI - UCSC - WormBase

Data Export:

Maximum 10000 results can be retrieved as Tab-delimited text or JSON format.

Debug Info:

Redirect URI : http://ggrna.dbcls.jp/ce/caagaagagattg
lang : en | div : | spe : ce | query_string : caagaagagattg | format : html | download : 

0.000 | 0.000 | search_start;
0.078 | 0.078 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=(nt:caagaagagattg)?source=Caenorhabditis elegans?to=0&format=json
0.187 | 0.109 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=(nt:caagaagagattg)?source=Caenorhabditis elegans?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.190 | 0.002 | cgi_end;

GGRNA ver.2 by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]