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2024-04-19 22:34:24, GGRNA : RefSeq release 222 (Jan, 2024)

Summary:

Results:

Matches are highlighted with green background. Overlapping matches are dark colored.

Caenorhabditis elegans Uncharacterized protein (T16G1.13), mRNA. (291 bp)
evidence" /codon_start=1 /product="Uncharacterized protein" /protein_id="NP_001256470.1" /db_xref="EnsemblGenomes-Gn:WBGene00194787" /db_xref="EnsemblGenomes-Tr:T16G1.13" /db_xref="GeneID:13215998" /db_xref="UniProtKB/TrEMBL:C9IY38" /db_xref="WormBase:WBGene00194787" /translation="MEKFAKDELARINSFPERRNKWPLLMQTQMTTGPGSSTPGFFPQPRARDDSNIDDVPLKSTYVAKILQDRQDVKTG" ORIGIN // REFERENCE 1 (bases 1 to 291) AUTHORS Sulson,J.E. and Waterston,R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science...
AA_position 6
NM_001269541.2 - Caenorhabditis elegans - NCBI - UCSC - WormBase
Caenorhabditis elegans Mediator complex subunit 9 (Y62E10A.23), partial mRNA. (397 bp)
Gn:WBGene00014938" /db_xref="EnsemblGenomes-Tr:Y62E10A.11a.1" /db_xref="EnsemblGenomes-Tr:Y62E10A.11a.2" /db_xref="GeneID:4927037" /db_xref="UniProtKB/TrEMBL:D5SGZ9" /db_xref="WormBase:WBGene00302964" /translation="MSKEVIKPSAESYLNKLYADLFHLVNSVEKGSGSELTVRLRNVEADIASFKDALKSIPDIGVEEYKERRKIAALYKQIEKKDELLDELAAFSLDAALKKPDGEQKQRSESGDK" ORIGIN // REFERENCE 1 (bases 1 to 397) AUTHORS Sulson,J.E. and Waterston,R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282 (5396), 2012-2018 (1998) PUBMED...
AA_position 81
NM_001383235.2 - Caenorhabditis elegans - NCBI - UCSC - WormBase
Caenorhabditis elegans Rab5-interacting protein (F44E7.9), mRNA. (624 bp)
xref="EnsemblGenomes-Gn:WBGene00018431" /db_xref="EnsemblGenomes-Tr:F44E7.9" /db_xref="GeneID:185741" /db_xref="GOA:O16254" /db_xref="InterPro:IPR010742" /db_xref="InterPro:IPR029008" /db_xref="UniProtKB/TrEMBL:O16254" /db_xref="WormBase:WBGene00018431" /translation="MSSKSSAPLEPTWTETLAKGLTPRSEWPDKDELLDVVYWGKQVISLLLGFIFGITSLTGVLVLVCYVGTSSVIAHHFVTKFQRVDEEEVGGFWELSKEGFGAAFATFMVTWITTYTYSTQV" misc_feature 111..341 /gene="F44E7.9" /locus_tag="CELE_F44E7.9" /note="Rab5-interacting protein (Rab5ip); Region: Rab5ip; pfam07019" /db_xref="CDD:429250" ORIGIN // REFERENCE 1 (bases 1 to 624) AUTHORS Sulson,...
AA_position 30
NM_072118.5 - Caenorhabditis elegans - NCBI - UCSC - WormBase
Caenorhabditis elegans Serine palmitoyltransferase 1 (sptl-1), partial mRNA. (1305 bp)
start=1 /product="Serine palmitoyltransferase 1" /protein_id="NP_001021979.1" /db_xref="EnsemblGenomes-Gn:WBGene00016020" /db_xref="EnsemblGenomes-Tr:C23H3.4a.1" /db_xref="EnsemblGenomes-Tr:C23H3.4a.2" /db_xref="GeneID:173389" /db_xref="WormBase:WBGene00016020" /translation="MRNRSKRQQEKLSKKLTERQKDELIADWTPEPLVPETPQDHPVLNPKYADGKMTKDVSIDGEKYLNMASTNFLSFIGVKRIEDRAKQTIFKYGVGSCGPRGFYGTVDVHLDLEKELAKFMGCEEAVLYSYGFATVSSAIPAYAKKGDVIFVDEGVNFAIQKGLQASRSRVEYFKHNDMEHLERLLLEQEQRDKKDPKKAKSVRRFIVVEGLYVNYADLCPLPKIIEFKWRFKVRVFIDESWSFGVIGKTGRGVTEHFNVPMEDVDMVMASLENALASTGGFCVGRSYVVGHQRLSGLGYCFSASLPPLLATAASEAISIIDEEP...
AA_position 21
NM_001026808.4 - Caenorhabditis elegans - NCBI - UCSC - WormBase
Caenorhabditis elegans Kinetochore-binding protein 3 (kbp-3), mRNA. (480 bp)
F26H11.1" /standard_name="F26H11.1" /note="Confirmed by transcript evidence" /codon_start=1 /product="Kinetochore-binding protein 3" /protein_id="NP_496993.1" /db_xref="EnsemblGenomes-Gn:WBGene00009179" /db_xref="GeneID:175097" /db_xref="WormBase:WBGene00009179" /translation="MESLNEYMDKIINRLKAVNEKDELVDEGMRKLQKCQEKIMKTRIDAQKHIDERHEQQSFEQQLLNKNMFETEQLEEKLKRLDDENKIGNEREFNKKLEAISAKWTDDVNLLKTTPNEPNDGNRKKLSNLSNILV" ORIGIN // REFERENCE 1 (bases 1 to 480) AUTHORS Sulson,J.E. and Waterston,R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a...
AA_position 21
NM_064592.7 - Caenorhabditis elegans - NCBI - UCSC - WormBase
Caenorhabditis elegans ANK_REP_REGION domain-containing protein (C18F10.7), mRNA. (566 bp)
db_xref="EnsemblGenomes-Tr:C18F10.7b" /db_xref="GeneID:175889" /db_xref="InterPro:IPR002110" /db_xref="InterPro:IPR020683" /db_xref="InterPro:IPR021832" /db_xref="InterPro:IPR036770" /db_xref="UniProtKB/TrEMBL:Q8MNV2" /db_xref="WormBase:WBGene00015978" /translation="MPLDSPAKLEFPLHWAVYVDCKDELNELLKNKSTLEIDKIDPRGRTPLMLAVTLQHFDCARLLMDAGADASIPNKEMWSVSNEAVAQGNEQFIQEVIHHRDYQRANRGAHAMKRSLEKLAEVPDFFCEMNWDFSNL" misc_feature 329 /gene="C18F10.7" /locus_tag="CELE_C18F10.7" /note="Ankyrin repeats (3 copies); Region: Ank_2; cl39094" /db_xref="CDD:453966" ORIGIN // REFERENCE 1 (bases 1 to 566) AUTHORS Sulson...
AA_position 22
NM_171160.5 - Caenorhabditis elegans - NCBI - UCSC - WormBase
Caenorhabditis elegans Serine palmitoyltransferase 1 (sptl-1), mRNA. (1529 bp)
note="Confirmed by transcript evidence" /codon_start=1 /product="Serine palmitoyltransferase 1" /protein_id="NP_001379707.1" /db_xref="EnsemblGenomes-Gn:WBGene00016020" /db_xref="GeneID:173389" /db_xref="WormBase:WBGene00016020" /translation="MGFLPDSWHFYIETLLVALLAYVVMRNRSKRQQEKLSKKLTERQKDELIADWTPEPLVPETPQDHPVLNPKYADGKMTKDVSIDGEKYLNMASTNFLSFIGVKRIEDRAKQTIFKYGVGSCGPRGFYGTVDVHLDLEKELAKFMGCEEAVLYSYGFATVSSAIPAYAKKGDVIFVDEGVNFAIQKGLQASRSRVEYFKHNDMEHLERLLLEQEQRDKKDPKKAKSVRRFIVVEGLYVNYADLCPLPKIIEFKWRFKVRVFIDESWSFGVIGKTGRGVTEHFNVPMEDVDMVMASLENALASTGGFCVGRSYVVGHQRLSGLGYCFSASLPPLLATAASEAISIIDEEPSRVQKVTEM...
AA_position 45
NM_001392983.1 - Caenorhabditis elegans - NCBI - UCSC - WormBase
Caenorhabditis elegans BCL7-like protein (bcl-7), partial mRNA. (633 bp)
name="C28H8.1" /note="Confirmed by transcript evidence" /codon_start=1 /product="BCL7-like protein" /protein_id="NP_498287.1" /db_xref="EnsemblGenomes-Gn:WBGene00016192" /db_xref="EnsemblGenomes-Tr:C28H8.1" /db_xref="GeneID:175838" /db_xref="WormBase:WBGene00016192" /translation="MYSANRSHRAETRNRSKDELRKVINSLEKVRRWEKKLVLIKDTNIRIYKWVPVSAQNIMAPPKIKEVKEVDEESNQVPSAENSQDSTSVTQPPPQFDINEDSNFSTGDHFDSDSNQTFEPQNYQGGATGSTDFSSMRDAEMTSKQP" misc_feature 13..156 /gene="bcl-7" /locus_tag="CELE_C28H8.1" /note="BCL7, N-terminal conserver region; Region: BCL_N; pfam04714" /db_xref="CDD:428081" ORIGIN // REFERENCE...
AA_position 17
NM_065886.6 - Caenorhabditis elegans - NCBI - UCSC - WormBase
Caenorhabditis elegans TYR_PHOSPHATASE_2 domain-containing protein (F28C6.8), partial mRNA. (544 bp)
F28C6.8a" /db_xref="GeneID:174381" /db_xref="GOA:Q93622" /db_xref="InterPro:IPR000340" /db_xref="InterPro:IPR000387" /db_xref="InterPro:IPR016130" /db_xref="InterPro:IPR020422" /db_xref="InterPro:IPR029021" /db_xref="UniProtKB/TrEMBL:Q93622" /db_xref="WormBase:WBGene00009207" /translation="MPFRSMKDELIQKENVGGVVCCTEEFELKAAMNAMREVDWKNEGVEFFAVPMKDFTGTAPRAEINEAVEFIESVASKGKTVYVHCKAGRTRSATVATCYLMKSRNWMSNVAWEFLKDKRHQVLLRNAHWRTVNEYRRFLDSNSSSTGSSN" misc_feature 1..414 /gene="F28C6.8" /locus_tag="CELE_F28C6.8" /note="protein-tyrosine phosphatase mitochondrial 1; Region: PTPMT1; cd14524" /db_xref="CDD...
AA_position 7
NM_001267233.3 - Caenorhabditis elegans - NCBI - UCSC - WormBase
Caenorhabditis elegans Uncharacterized protein (W08E12.8), partial mRNA. (630 bp)
by transcript evidence" /codon_start=1 /product="Uncharacterized protein" /protein_id="NP_500310.1" /db_xref="EnsemblGenomes-Gn:WBGene00021089" /db_xref="EnsemblGenomes-Tr:W08E12.8a" /db_xref="GeneID:189295" /db_xref="UniProtKB/TrEMBL:H2L0M8" /db_xref="WormBase:WBGene00021089" /translation="MSGFRKDELIPVIIDIHGEKRKMFEDIADTVLRRVLDEEENECPPIESRGSSTSSFSTTPSSSASPLSINQLLSSSFSQPPAPQLPVPLAFNPFQLALYQSLVANNTLAFPVFGGPPSIFPLLVPPPQPQPTVESIELLKILQNMLAKQKK" ORIGIN // REFERENCE 1 (bases 1 to 630) AUTHORS Sulson,J.E. and Waterston,R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of...
AA_position 6
NM_067909.6 - Caenorhabditis elegans - NCBI - UCSC - WormBase
Caenorhabditis elegans Sulfhydryl oxidase (F56C11.3), mRNA. (558 bp)
Tr:F56C11.3" /db_xref="GeneID:171611" /db_xref="GOA:O44975" /db_xref="InterPro:IPR017905" /db_xref="InterPro:IPR036774" /db_xref="InterPro:IPR039799" /db_xref="UniProtKB/TrEMBL:O44975" /db_xref="WormBase:WBGene00018955" /translation="MEIGPDGKPCRACVSVEDMMKKGREMAEKIKKKESETTPSTSTGAKLHGCPVDKDELGRSTWNLLHTMSVYYPEKPTDEDKDRARSFMSILGKTYPCDFCAKDLRKDLKESPPKVESREAFALWMCQLHNKVNEKTGKPKFECRDVMQRWRDGWKDGSCDY" misc_feature 176..454 /gene="F56C11.3" /locus_tag="CELE_F56C11.3" /note="Erv1 / Alr family; Region: Evr1_Alr; pfam04777" /db_xref="CDD:428117" ORIGIN // REFERENCE 1 (bases 1 to 558) AUTHORS Sulson,J.E....
AA_position 54
NM_058289.4 - Caenorhabditis elegans - NCBI - UCSC - WormBase
Caenorhabditis elegans Aminotransferase class I/classII domain-containing protein (sptl-1), partial mRNA. (525 bp)
IPR015421" /db_xref="InterPro:IPR015422" /db_xref="InterPro:IPR015424" /db_xref="UniProtKB/TrEMBL:A0A0K3ARH7" /db_xref="WormBase:WBGene00016020" /translation="MEDVDMVMASLENALASTGGFCVGRSYVVGHQRLSGLGYCFSASLPPLLATAASEAISIIDEEPSRVQKVTEMAINGQKKLQDALSGSKFSLQGCPESPMKHIYYNGEDEEKQLDTFVETVFTKNHLLLTRARYLDKDELFKIRPSIRVMFQHDLTEEEIQRAVDAIRVVAHKF" misc_feature <4..513 /gene="sptl-1" /locus_tag="CELE_C23H3.4" /note="Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...
AA_position 137
NM_001313584.3 - Caenorhabditis elegans - NCBI - UCSC - WormBase
Caenorhabditis elegans TYR_PHOSPHATASE_2 domain-containing protein (F28C6.8), partial mRNA. (676 bp)
IPR000340" /db_xref="InterPro:IPR000387" /db_xref="InterPro:IPR016130" /db_xref="InterPro:IPR020422" /db_xref="InterPro:IPR029021" /db_xref="InterPro:IPR042165" /db_xref="UniProtKB/TrEMBL:I2HA91" /db_xref="WormBase:WBGene00009207" /translation="MLTSLIFYPSLGYNLFRNYVQPNRWAWYNRVDETLILGAMPFRSMKDELIQKENVGGVVCCTEEFELKAAMNAMREVDWKNEGVEFFAVPMKDFTGTAPRAEINEAVEFIESVASKGKTVYVHCKAGRTRSATVATCYLMKSRNWMSNVAWEFLKDKRHQVLLRNAHWRTVNEYRRFLDSNSSSTGSSN" misc_feature 79..531 /gene="F28C6.8" /locus_tag="CELE_F28C6.8" /note="protein-tyrosine phosphatase mitochondrial 1; Region: PTPMT1; cd14524" /db_xref="CDD:350374"...
AA_position 46
NM_001267232.2 - Caenorhabditis elegans - NCBI - UCSC - WormBase
Caenorhabditis elegans ADP-ribosylation factor-like protein 6 (arl-6), mRNA. (1417 bp)
like protein 6" /protein_id="NP_497993.1" /db_xref="EnsemblGenomes-Gn:WBGene193" /db_xref="EnsemblGenomes-Tr:C38D4.8" /db_xref="GeneID:183311" /db_xref="WormBase:WBGene193" /translation="MGFFSSLSSLFGLGKKDVNIVVVGLDNSGKTTILNQLKTPETRSQQIVPTVGHVVTNFSTQNLSFHAFDMAGQMKYRSTWESYFHSSQGVIFVLDSSDRLRMELLKDELMMVMEHKDVVSRGIPIVILANKMDIPGAMTASDITVALGLNLYRSGTWSIHSTCALTGDGLDKAMQQLSAEITKYMESRRT" misc_feature 71..556 /gene="arl-6" /locus_tag="CELE_C38D4.8" /note="Arf-like 6 (Arl6) GTPase; Region: Arl6; cd04157" /db_xref="CDD:206722" misc_feature 86..109 /gene="arl-6" /locus_tag="CELE_C38D4.8" /note="G1 box; other...
AA_position 106
NM_065592.3 - Caenorhabditis elegans - NCBI - UCSC - WormBase
Caenorhabditis elegans DUF19 domain-containing protein (C17B7.3), partial mRNA. (597 bp)
DUF19 domain-containing protein" /protein_id="NP_001309623.1" /db_xref="GeneID:182705" /db_xref="InterPro:IPR002542" /db_xref="InterPro:IPR016638" /db_xref="UniProtKB/TrEMBL:A0A131MBP3" /db_xref="WormBase:WBGene00015877" /translation="MTSFLLLAIIGTVLVGVAHGAPVASKDTNCTEGSLDAILCLLNLQKFAERSHELDMNDKDELKGFKDTCDSLRSCLANLKCSPVPKDQKEAALRSIEKYCDAVVYVYSDFAQCREKLNAKKSKCFDDWDPIPNVHKENDPKKVEQLKKDTCKNYFGKDDCLKKEVIEICSQQEWDKLREHFIGFSGALVSECDFSRLR" misc_feature 88..579 /gene="C17B7.3" /locus_tag="CELE_C17B7.3" /note="Domain of unknown function (DUF19); Region: DUF19; pfam01579" /db_xref="CDD:426332" ORIGIN //...
AA_position 59
NM_001322509.1 - Caenorhabditis elegans - NCBI - UCSC - WormBase
Caenorhabditis elegans DUF19 domain-containing protein (T28A11.3), mRNA. (683 bp)
Gn:WBGene00020870" /db_xref="EnsemblGenomes-Tr:T28A11.3" /db_xref="GeneID:189010" /db_xref="InterPro:IPR002542" /db_xref="InterPro:IPR016638" /db_xref="UniProtKB/TrEMBL:P91521" /db_xref="WormBase:WBGene00020870" /translation="MTSFLLLAIIGTVLLGVAHGAPAASKDTNCTEGSLDAILCLLNLQKFAEKSDELDMNDKDELKGFKDTCDSLRSCLANLKCSPVPKDQKEAALRSIEKYCDAVVYVYSDFAQCRDKLNAKKSKCFDDWDPIPNVHKENDPKKVEQLKKDTCKNYFGKDDCMKKEVIETCSQPEWDKFSEQFINYSGALVSECDFSRLR" misc_feature 137..628 /gene="T28A11.3" /locus_tag="CELE_T28A11.3" /note="Domain of unknown function (DUF19); Region: DUF19; pfam01579" /db_xref="CDD:426332" ORIGIN //...
AA_position 59
NM_071503.4 - Caenorhabditis elegans - NCBI - UCSC - WormBase
Caenorhabditis elegans HOOK domain-containing protein (F19B10.2), mRNA. (989 bp)
protein_id="NP_494612.2" /db_xref="EnsemblGenomes-Gn:WBGene00017584" /db_xref="EnsemblGenomes-Tr:F19B10.2" /db_xref="GeneID:173711" /db_xref="UniProtKB/TrEMBL:O02074" /db_xref="WormBase:WBGene00017584" /translation="MVGTQQKTRQQLESTIEEQEETIKELQLMLGQAEYEHLKKVTELAKMTKNRDYMTECEATSHAVNVKLERENKKLKDELARKDAEIMMQKESGDGGGGSSVSETWKDHLNEANRKYLDERKKGEAARVTWSTLVQKLMSEACQRETKMLEANEKLKAELAELRNQMFELEANSENLKRPALSDGYLAKKSARLYLSSVGL" ORIGIN // REFERENCE 1 (bases 1 to 989) AUTHORS Sulson,J.E. and Waterston,R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a...
AA_position 76
NM_062211.8 - Caenorhabditis elegans - NCBI - UCSC - WormBase
Caenorhabditis elegans DUF19 domain-containing protein (C36C5.14), mRNA. (672 bp)
Gn:WBGene00016483" /db_xref="EnsemblGenomes-Tr:C36C5.14" /db_xref="GeneID:183270" /db_xref="InterPro:IPR002542" /db_xref="InterPro:IPR016638" /db_xref="UniProtKB/TrEMBL:O16408" /db_xref="WormBase:WBGene00016483" /translation="MIGLLKLALIGTMLLGVAHGASLASAKGSDCTVKDTNAAVRCVLITRDFLGEVDELDMNDKDELKDFKKSCDTVQSCWNNLTCTAKSEDEKKQYVENIKNYCDAAMYVYDGFSKCGDKLNAKKSKCFDDWDPIPNKTHSEKDAAKVEKIKNDACKTYFGKDNCMKQEVTETCGKQEWDSLHKHFLHLSGGLVSKCDFSRLE" misc_feature 114..611 /gene="C36C5.14" /locus_tag="CELE_C36C5.14" /note="Domain of unknown function (DUF19); Region: DUF19; pfam01579" /db_xref="CDD:426332" ORIGIN //...
AA_position 61
NM_071470.2 - Caenorhabditis elegans - NCBI - UCSC - WormBase
Caenorhabditis elegans DUF19 domain-containing protein (C36C5.15), partial mRNA. (612 bp)
Gn:WBGene00016484" /db_xref="EnsemblGenomes-Tr:C36C5.15" /db_xref="GeneID:183271" /db_xref="InterPro:IPR002542" /db_xref="InterPro:IPR016638" /db_xref="UniProtKB/TrEMBL:O16410" /db_xref="WormBase:WBGene00016484" /translation="MADLLKLVLIGTVLLGVAHGASLAAASATDSNCTTTNTYDVVRCGSIMKDFVKEIDELDMNDKDELKEFKKSCDTALSCLNGYACVANRKDAMNQYIENIKNYCEAVQYVHFEFSKCGDKLNAKKSQCYDDWDPIPNKTHLETDAAKIEKIKNDACKTYFGKDDCMKKEVTETCGKEEWDSLRKQFVLISRGLVSKCDFSRLD" misc_feature 97..594 /gene="C36C5.15" /locus_tag="CELE_C36C5.15" /note="Domain of unknown function (DUF19); Region: DUF19; pfam01579" /db_xref="CDD:426332" ORIGIN //...
AA_position 63
NM_071472.1 - Caenorhabditis elegans - NCBI - UCSC - WormBase
Caenorhabditis elegans Small ribosomal subunit protein uS7 (rps-5), mRNA. (693 bp)
Tr:T05E11.1" /db_xref="GeneID:178012" /db_xref="WormBase:WBGene00004474" /translation="MADNWGSENVVADAAPATEAPEVALFGKWSLQSVNVSDISLVDYIPVKEKSAKYLPHSAGRFQVRRFRKAACPIVERLANSLMMHGRNNGKKLMTVRIVKHAFEIIYLLTGENPVQVLVNAVINSGPREDSTRIGRAGTVRRQAVDVAPLRRVNQAIWLLCTGAREAAFRNVKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR" misc_feature 74..631 /gene="rps-5" /locus_tag="CELE_T05E11.1" /note="Eukaryota homolog of Ribosomal Protein S7; Region: uS7_Eukaryote; cd14867" /db_xref="CDD:271246" misc_feature order(158..166,170..181,278..280,290..292) /gene="rps-5" /locus_tag="CELE_T05E11.1" /note="S9 interface...
AA_position 199
NM_069676.6 - Caenorhabditis elegans - NCBI - UCSC - WormBase
Caenorhabditis elegans Onchocerca Related Antigen family (ora-1), mRNA. (779 bp)
xref="GeneID:191739" /db_xref="UniProtKB/TrEMBL:O45098" /db_xref="WormBase:WBGene00003879" /translation="MISNIFKISAALLLLTIVSEAKPCFGRCGGRPPPPCGLPPFLEDLPSDVQTKITEIWKDYKEGDKCYEEQGLTREIMESLPKDVRKSIHKRPPLPFLRGLPKDILAKFDAIFKDKSIPFSEKPEKIDALAQEVLTGDNLKKFQEFKEKKEKEMQEYKDKESKLSAAAKVANEKLEALGKQKFAILEELDENVKDELFDLWKSRPHGPPRHH" ORIGIN // REFERENCE 1 (bases 1 to 779) AUTHORS Sulson,J.E. and Waterston,R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282 (5396), 2012-2018 (1998) PUBMED 9851916 REMARK...
AA_position 193
NM_068933.8 - Caenorhabditis elegans - NCBI - UCSC - WormBase
Caenorhabditis elegans Ground-like domain-containing protein (grl-8), mRNA. (775 bp)
InterPro:IPR007284" /db_xref="UniProtKB/TrEMBL:Q23353" /db_xref="WormBase:WBGene00001717" /translation="MCHYYLLRGFLLISVASSAIIPLPSPPNPLPEPPTVDASPSLTSEKRTVAMEVTSSAHHLLRPKTESDSEEEQPKPTRNRVRLHSHNSKVSKVSRTREVEVLSEKCNDDKLEQIMQDAMTPSLSTSKMVISERATRDFGANFDVICARGHFSYYVEAASYCEVTMNDVTCLAYKPGPQTDDGSKNDFIDIKDELIKNKNTREKDEAESKKNR" misc_feature 326..538 /gene="grl-8" /locus_tag="CELE_ZC487.5" /note="Ground-like domain; Region: Ground-like; pfam04155" /db_xref="CDD:427751" ORIGIN // REFERENCE 1 (bases 1 to 775) AUTHORS Sulson,J.E. and Waterston,R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE...
AA_position 191
NM_072306.2 - Caenorhabditis elegans - NCBI - UCSC - WormBase
Caenorhabditis elegans MYND-type domain-containing protein (bra-2), mRNA. (886 bp)
WBGene00017757" /db_xref="EnsemblGenomes-Tr:F23H11.1" /db_xref="GeneID:175255" /db_xref="InterPro:IPR002893" /db_xref="UniProtKB/TrEMBL:O01918" /db_xref="WormBase:WBGene00017757" /translation="MADGQVHDELMMDGVVPQQGDIHLSPIDKDLGDAALENNVRQYHLDGVVVSEGMKRMIIDLQRHWLSEYHASREKCLVELTEKLHQEFMMDQQKIRSELLQQFKDELEQTRADLENKHRENLKMESAKLNEKHKRELVASRKKQWCWSCDNEAIYHCCWNTAYCSVECQQGHWQTHRKFCRRKKGNNAPGAPSVPAPQQVGAPMPPQQQ" misc_feature 468..572 /gene="bra-2" /locus_tag="CELE_F23H11.1" /note="MYND finger; Region: zf-MYND; pfam01753" /db_xref="CDD:426410" ORIGIN // REFERENCE 1 (bases 1 to 886) AUTHORS Sulson,J.E. and...
AA_position 109
NM_064891.4 - Caenorhabditis elegans - NCBI - UCSC - WormBase
Caenorhabditis elegans Exosome complex component RRP46 homolog (crn-5), mRNA. (747 bp)
InterPro:IPR020568" /db_xref="InterPro:IPR027408" /db_xref="InterPro:IPR036345" /db_xref="UniProtKB/TrEMBL:G5EG59" /db_xref="WormBase:WBGene798" /translation="MAGRLREMRCELSFLKNADGSACFSQGATCIWASCSGPGDVHASKASDEAMTLDISYRANCGDNKFNVLNNIIHSTLSNAINLELFPHTTISVTVHGIQDDGSMGAVAINGACFALLDNGMPFETVFCGVLIVRVKDELIIDPTAKQEAASTGRVLFSVCKGSDGHPEVCAMDAIGHWDFIQLEAAWSLAQPSASAIFDFYKTVMKRKLSVDEQ" misc_feature 23..616 /gene="crn-5" /locus_tag="CELE_C14A4.5" /note="RRP46 subunit of eukaryotic exosome; Region: RNase_PH_RRP46; cd11372" /db_xref="CDD:206777" misc_feature order...
AA_position 136
NM_063883.4 - Caenorhabditis elegans - NCBI - UCSC - WormBase
Caenorhabditis elegans Protein kinase domain-containing protein (Y69A2AR.32), partial mRNA. (651 bp)
Gn:WBGene00022101" /db_xref="EnsemblGenomes-Tr:Y69A2AR.32b.1" /db_xref="EnsemblGenomes-Tr:Y69A2AR.32b.2" /db_xref="GeneID:177042" /db_xref="GOA:Q8T871" /db_xref="InterPro:IPR036612" /db_xref="UniProtKB/TrEMBL:Q8T871" /db_xref="WormBase:WBGene00022101" /translation="MAHAVEVIQRLLSPPKDGKDELKRQQLVDISLINGTYRVTSTSNEHVGQFRRPRYSADPTSNSTDLQLRPLDAHGAYGDVGSVYGIAQQKRIWQKPRGPDATSEEFAHSVSSREFVTDIVHKTKNSPRRANDAIFSLTDEIVNDSLKAAQTLLASHELLTFGLQDQQKMMKVTQYGAGDTSSRKNLPYPPPLMSTPMPPPGYSMCYMMPPYYPPRY" ORIGIN // REFERENCE 1 (bases 1 to 651) AUTHORS Sulson,J.E. and Waterston,R. CONSRTM Caenorhabditis elegans...
AA_position 19
NM_171290.6 - Caenorhabditis elegans - NCBI - UCSC - WormBase
Caenorhabditis elegans RRM domain-containing protein (rnp-3), mRNA. (777 bp)
WBGene00004386" /db_xref="EnsemblGenomes-Tr:K08D10.3a" /db_xref="GeneID:177182" /db_xref="GOA:Q21323" /db_xref="InterPro:IPR000504" /db_xref="InterPro:IPR012677" /db_xref="InterPro:IPR035979" /db_xref="UniProtKB/TrEMBL:Q21323" /db_xref="WormBase:WBGene00004386" /translation="MADINPNHTIYVNNLNEKVKKDELKRSLHMVFTQFGEIIQLMSFRKEKMRGQAHIVFKEVSSASNALRALQGFPFYGKPMRIQYAREDSDVISRAKGTFVEKRQKSTKIAKKPYEKPAKNGKSAAEPTQKEPQETDGPGLPNNILFCSNIPEGTEPEQIQTIFSQFPGLREVRWMPNTKDFAFIEYESEDLSEPARQALDNFRITPTQQITVKFASK" misc_feature 31..264 /gene="rnp-3" /locus_tag="CELE_K08D10.3" /note="RNA recognition motif 1 (RRM1) found...
AA_position 21
NM_068104.6 - Caenorhabditis elegans - NCBI - UCSC - WormBase
Caenorhabditis elegans Alpha-ketoglutarate-dependent dioxygenase AlkB-like domain-containing protein (alkb-7), mRNA. (757 bp)
db_xref="InterPro:IPR032870" /db_xref="InterPro:IPR037151" /db_xref="UniProtKB/TrEMBL:Q7YWP5" /db_xref="WormBase:WBGene00012920" /translation="MKITPRTLQHLIKFHNLELWPKDLAETMKTCCYVKKDFITEAEEKSLLVDVEPHMKRLRYEKSHWDDAIHLYREREQRKWRDENLEVISRIRSESFGANTEHLTYVHILDLHKDGVIKPHIDAIRYCGDVITGVSLLSDAIMRLRHKDQKDELIMDLLMPRRSLYRLGGPGRYDFTHEVLGEQESVWNGEQVPRERRISIICRDLPKVANRQTAEEEIKLKPIPEEI" misc_feature <362..550 /gene="alkb-7" /locus_tag="CELE_Y46G5A.35" /note="Alkylated DNA repair dioxygenase AlkB [Replication, recombination and repair]; Region: AlkB; COG3145" /db_xref="CDD:225687" ORIGIN // REFERENCE 1...
AA_position 150
NM_001027271.2 - Caenorhabditis elegans - NCBI - UCSC - WormBase
Caenorhabditis elegans BTB domain-containing protein (C40A11.4), mRNA. (778 bp)
xref="InterPro:IPR000210" /db_xref="InterPro:IPR003131" /db_xref="InterPro:IPR011333" /db_xref="UniProtKB/TrEMBL:Q9TZB0" /db_xref="WormBase:WBGene00016547" /translation="MPVSSTVKLNIGGEAFKTSRTTLSHFNGLFKTMLEKDTATTELSFPHRSPKHFDLILNYMRDGDVLLPRNNKELAEVREEAEFYQLNELARQCDSIWIVQYNKGPREMLRRIAGSKKDILVVWYSTHKDELINCPEDFSFPYFYEQYSDKIDVYFQKVETSNRIENVPCDSCWCPGRKCDDKCHNVEAPSWRFWLYSANRGFHTFDEFSRFKQLFEMRIMKWKDDSHF" misc_feature 73..324 /gene="C40A11.4" /locus_tag="CELE_C40A11.4" /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily; Region: BTB_POZ; cl38908" /db_...
AA_position 128
NM_061794.4 - Caenorhabditis elegans - NCBI - UCSC - WormBase
Caenorhabditis elegans ShKT domain-containing protein (C15F1.1), mRNA. (831 bp)
IPR003582" /db_xref="InterPro:IPR012674" /db_xref="InterPro:IPR014878" /db_xref="UniProtKB/TrEMBL:A0A2C9C2Z4" /db_xref="WormBase:WBGene00015794" /translation="MSIHQTSFLLFTLFSLLSFSIAADTCRDFDNNCRDWITVNPNACDSTEYIKRSCLKSCGQCGEVDPKYDLRRLSQELTPIGFLVGKWRSEHGGKAIFPTIPKFTFGEEIEISIPGDAMQSAQALNYTAFAWSINDKDELHSEYGYISVKPNTKEVALTTVMNNGFVTVEEGPVNGNQIRFRLKDIGRISFSRDLPVHDLVREWTLLDRSTLQARLNMETLTHGMQEHTFIRYNKIEP" misc_feature 89..196 /gene="C15F1.1" /locus_tag="CELE_C15F1.1" /note="ShK toxin domain; Region: ShKT; smart00254" /db_xref="CDD:214586" misc_feature 242..718 /gene="C15F1.1" /locus_tag="CELE_C15F1.1" /...
AA_position 136
NM_001383877.2 - Caenorhabditis elegans - NCBI - UCSC - WormBase
Caenorhabditis elegans Zf-C4pol domain-containing protein (F48F7.6), mRNA. (972 bp)
xref="EnsemblGenomes-Gn:WBGene00009851" /db_xref="EnsemblGenomes-Tr:F48F7.6" /db_xref="GeneID:181507" /db_xref="UniProtKB/TrEMBL:Q20573" /db_xref="WormBase:WBGene00009851" /translation="MSAETYVMEIDGGPGDLHCMKCLKICNYLKDSYCCKKTKNMTLPQKKAESAFLMICLQRNTIELMVTALLANKKIIDSKGNCAFCRNKKQHEEEKWCAGRTKLQLFLHRIDKDELKVEEYLEKYLEIKTRNRMEQLDIVQARIVREMKAVAIAQGKSEEEVEHILAKQGRKARRMQRSEYKHAEEDNKGVRQRLAAKLVAKKSEIIERFCLAQRTVFVKADCPNVYGRTTTHISYLLE" ORIGIN // REFERENCE 1 (bases 1 to 972) AUTHORS Sulson,J.E. and Waterston,R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C....
AA_position 112
NM_077926.7 - Caenorhabditis elegans - NCBI - UCSC - WormBase
Caenorhabditis elegans J domain-containing protein (dnj-23), mRNA. (1019 bp)
xref="InterPro:IPR001623" /db_xref="InterPro:IPR018253" /db_xref="InterPro:IPR036869" /db_xref="UniProtKB/TrEMBL:Q22751" /db_xref="WormBase:WBGene00001041" /translation="MFLEECKTHFNTDCLYELLGVKKDCDEKALKKGYYRQSMRWHPDKSNLVEEDMQTYTTKFQLLNKAYQILSDEEKRKIYDETGSVDDEAGELNEDALKAWRMIFKKVTKEDIDSFMKTYQGSREQKDELVVHYEKFNGDIAKIREYAIGFDGVEELKEALDKLIDDGEIEKTKKYETSTSDKKMKAYKRKAEKEAIEVENMTQNNSDLVALIQGRQKERGTSFLDSLAAKYAPSSSKKAKRQ" misc_feature 92..292 /gene="dnj-23" /locus_tag="CELE_T24H10.3" /note="DnaJ domain; Region: DnaJ; pfam00226" /db_xref="CDD:395170" misc_feature 95..772 /gene="dnj-23" /locus_tag="CELE_...
AA_position 126
NM_063543.6 - Caenorhabditis elegans - NCBI - UCSC - WormBase
Caenorhabditis elegans F-box domain-containing protein (Y57G11C.499), partial mRNA. (741 bp)
db_xref="EnsemblGenomes-Gn:WBGene00077762" /db_xref="EnsemblGenomes-Tr:Y57G11C.499" /db_xref="GeneID:7040135" /db_xref="InterPro:IPR001810" /db_xref="InterPro:IPR002900" /db_xref="InterPro:IPR040161" /db_xref="UniProtKB/TrEMBL:B3GWE2" /db_xref="WormBase:WBGene00077762" /translation="MEEKLKDELNSIKIFNGLSLSRMPTVVVHGVVDNLLEQREPIDRCFLSKVCRQMRDVIYSKDLGFKKVGVHFNMYYLSLCLDNVSFTYKNDESGCNAKCDGRQDELIKKDKLNSFLDDFAIVMKNRKLRLDEFEISGNTFISSERIETLETGVVEWMKKNSIMEKQFKTKKVRLAEVKSDYVIDILSLFKPGVLEKIEINWKKWPASYFDDIDALFELDQWKQANVNWLASSTISNFSFKININFK" misc_feature 58..204 /gene="Y57G11C.499" /locus_tag="CELE_Y57G11C...
AA_position 6
NM_001136403.3 - Caenorhabditis elegans - NCBI - UCSC - WormBase
Caenorhabditis elegans Enolase-phosphatase E1 (F58H1.3), partial mRNA. (820 bp)
Confirmed by transcript evidence" /codon_start=1 /product="Enolase-phosphatase E1" /protein_id="NP_001041138.2" /db_xref="EnsemblGenomes-Gn:WBGene00010286" /db_xref="EnsemblGenomes-Tr:F58H1.3a" /db_xref="GeneID:179634" /db_xref="WormBase:WBGene00010286" /translation="MTTTTIQFNALLLDIEGTITSISFVKDELFPYAFENVGNYLEEHYDNPATQIIVEDLRHIADQQAENDVAVVRIREPRKECIEDVTKNVRHWIKRDKKLTPMKALQGLIWEEAYQRGDVKGHVYPDVLPVLKIVENRKIPIYIYSSGSVHAQKLLFANSIEGDMTKILYGYFDTNIGLKGESNSYTKISERIKIPPSEILFLTDVEAEAAAAKKAGLQTKLVVRPGNAGLTQEAINAYGTIESLEEIL" misc_feature 28..678 /gene="F58H1.3" /locus_tag="CELE_F58H1.3" /note="Enolase-...
AA_position 26
NM_001047673.4 - Caenorhabditis elegans - NCBI - UCSC - WormBase
Caenorhabditis elegans Dynein regulatory complex subunit 4 (Y18D10A.11), mRNA. (1143 bp)
Dynein regulatory complex subunit 4" /protein_id="NP_493249.1" /db_xref="EnsemblGenomes-Gn:WBGene00012481" /db_xref="EnsemblGenomes-Tr:Y18D10A.11" /db_xref="GeneID:173153" /db_xref="GOA:Q9XW20" /db_xref="UniProtKB/TrEMBL:Q9XW20" /db_xref="WormBase:WBGene00012481" /translation="MESSSRIEIATLKDELLDELKRRVAEKTAQNVKLQQDAEEISKKLDAALSPRKDRITQLESRLEVVQQAAKAQQKRWEGELASSRAQNEQLSEEKSQLQKENEELLLVLLRTEGIVDANKSLSEQLANAQDAEVSMTTLKETVAKLEEENNVLQATWAEERSGLVNELIDTKEKLAKSAQAQTELDESHRDIMTAVPVAKRTAMDEMFPELDPAIRQLVHLIGQNENYMYAAAGLALYALLIHLYILL" misc_feature 685 /gene="Y18D10A.11" /locus_tag="CELE_Y18D10A.11" /note="...
AA_position 13
NM_060848.5 - Caenorhabditis elegans - NCBI - UCSC - WormBase
Caenorhabditis elegans Translation initiation factor IF-2 (Y76B12C.4), partial mRNA. (848 bp)
Gn:WBGene00022298" /db_xref="EnsemblGenomes-Tr:Y76B12C.4a" /db_xref="GeneID:176998" /db_xref="UniProtKB/TrEMBL:Q9N4C7" /db_xref="WormBase:WBGene00022298" /translation="MEAHRAEQPQCTKSGKVILKPGYDMTDGLSEIDDWAPEKKKRAKKVPSKPREGPKLIDEFEEKESEKEAAEKEKEKEKEKEKTHEKNEADKEEKEAEKEEEKEEKPPKEVTEEKEKEKEREKTKTKDELEEAPREKETMEKKQKSKDEDEGDLSKEEILKIKKALKKEKKLRDRERLKTEKIDKSTETKNSTTPSTEKEKSSMKKTKKEAAVATGTSGSAKKKVRPPATKRKPKDIRAKKKVCCTIL" ORIGIN // REFERENCE 1 (bases 1 to 848) AUTHORS Sulson,J.E. and Waterston,R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a...
AA_position 126
NM_001380074.1 - Caenorhabditis elegans - NCBI - UCSC - WormBase
Caenorhabditis elegans ShKT domain-containing protein (C15F1.1), mRNA. (879 bp)
xref="InterPro:IPR012674" /db_xref="InterPro:IPR014878" /db_xref="UniProtKB/TrEMBL:A0A2C9C2Z6" /db_xref="WormBase:WBGene00015794" /translation="MSIHQTSFLLFTLFSLLSFSIAADTCRDFDNNCRDWITVNPNACDSTEYIKRSCLKSCGQCGEVDPKYDLRRLSQELTPIGFLVGKWRSEHGGKAIFPTIPKFTFGEEIEISIPGDAMQSAQALNYTAFAWSVEKRDEKNPNRAFAWSINDKDELHSEYGYISVKPNTKEVALTTVMNNGFVTVEEGPVNGNQIRFRLKDIGRISFSRDLPVHDLVREWTLLDRSTLQARLNMETLTHGMQEHTFIRYNKIEP" misc_feature 89..196 /gene="C15F1.1" /locus_tag="CELE_C15F1.1" /note="ShK toxin domain; Region: ShKT; smart00254" /db_xref="CDD:214586" misc_feature 242..766 /gene="C15F1.1" /locus_tag="CELE_C15F1.1" /...
AA_position 152
NM_001381484.2 - Caenorhabditis elegans - NCBI - UCSC - WormBase
Caenorhabditis elegans Uncharacterized protein (B0272.4), mRNA. (969 bp)
db_xref="GeneID:181892" /db_xref="WormBase:WBGene00007130" /translation="MTSGLILTERKNNVLWVTLNRPKKFNALTRQMFLDLCTVFNDAADDDDIAFVVFTGGKGKYYCAGSDFSPAELSTLTDIQEHGYKLFVDILIAFPKPIIALVNGHAVGVSVTMLGVMDAVIAIDTATFATPFADIGVCPEACSSYTLPRIMGHQKAAALMMFSEKFTAHEAHIAGLVTQILPAATFEKDAKKIIDRYSKLSPITMKVAKELMRTTQIKDELLTVNRKEQVHLNGMFSHEDTIARLTAKFVKPSKI" misc_feature 23..595 /gene="B0272.4" /locus_tag="CELE_B0272.4" /note="Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-...
AA_position 218
NM_077182.2 - Caenorhabditis elegans - NCBI - UCSC - WormBase
Caenorhabditis elegans F-box domain-containing protein (fbxa-76), mRNA. (836 bp)
Tr:Y119D3B.22" /db_xref="GeneID:4363050" /db_xref="InterPro:IPR001810" /db_xref="InterPro:IPR002900" /db_xref="InterPro:IPR040161" /db_xref="UniProtKB/TrEMBL:Q2WF62" /db_xref="WormBase:WBGene00044675" /translation="MARLTTLPIEIINEVIEKLEPIHRLTLRNVSRNFRTAVDSHGIGCEEAVMSLRPDNKVVLTIDGEQVVPFNNLDVILKDELDDICVVFESEDQEKRRNLVKYLASTLKNLENLENLCTVRNLEFNGLKALEILLLLPFFNVQGSLHIERITGVEKLEELVQLSQWKKVSRLNWYNQTVNVALLGNFFHIPWFYIVVDSFSVDNAVGIRDDLLKNGSFQYCYIRFPDMEMNIPELARVFKPDYTDGESFEYGHAFTVTLNSSSFCIRRNE" misc_feature 18..149 /gene="fbxa-76" /locus_tag="CELE_Y119D3B.22" /note="F-box domain found in Caenorhabditis...
AA_position 78
NM_001381727.2 - Caenorhabditis elegans - NCBI - UCSC - WormBase
Caenorhabditis elegans MRG domain-containing protein (epg-8), partial mRNA. (813 bp)
WormBase:WBGene00013695" /translation="MRIAMKQSEVNKLDTTPHSKPSQFDAVFTSQSNFISRADIKKKEKSERLTKLEEEVAKKRLKYCIHACRIFPVQVYDVNVESVTVKSKNSKNWAVVNDSELQKGLRIAIRNSYINDKLRAKLANQLSNGTISLPLDLHPPFAAFTNTLQLVHLLSVIFNFRPPETLSHHDLCIRERWTKESLNRDWSTLCDAVIYLCIFIGMSHTKLKYTDPHHNLIALASFVVNDYNNINRIGSRPMCDLSEVHALIEAQRPEDCQKKDELDESWTFVD" ORIGIN // REFERENCE 1 (bases 1 to 813) AUTHORS Sulson,J.E. and Waterston,R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282 (5396), 2012-2018 (1998) PUBMED 9851916 REMARK...
AA_position 259
NM_001392913.1 - Caenorhabditis elegans - NCBI - UCSC - WormBase
Caenorhabditis elegans MSP domain-containing protein (R05F9.9), mRNA. (1170 bp)
Q21745" /db_xref="WormBase:WBGene00019892" /translation="MQRHERIRFFITEQCRNLDPTYRNYMYPKQILLGDVPLPLLPNSSLTFRVNSAEKICFRIRLSIDDSQEPLNIGIPLSQVESVSIKDHSAKHPEPALLFLLKKGALERFIQVCNPLLGELHTYHGRKRKMLTYLTVILGMDPHLEQPNPVYCRVSLMANKFTFPFGTAKKILLKDLPIMWQEVLDKQYDRRLKTGIHHDRERMAEMDDEAWDWLMSFLNVKWDKCPSGGRWFVRDKDELETSVNEHNENLAIKREASPQDDLLAKPMKQIKYSDSDVGSPNSISSESSASIMTR" ORIGIN // REFERENCE 1 (bases 1 to 1170) AUTHORS Sulson,J.E. and Waterston,R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science...
AA_position 236
NM_062491.7 - Caenorhabditis elegans - NCBI - UCSC - WormBase
Caenorhabditis elegans DUF2013 domain-containing protein (F41G3.6), mRNA. (1071 bp)
translation="MRYFGTFNRNKGLFTESRDIMVYQQARDEEHKKRKEANLELDSDSHVGMWLLCHPDNDLAIAMYTTMVRLAGELSLEVTHDDIIAWLGTAIRCHPSQLVPRGEAVSIRDKPTLPTDPRGGDWNTGVGITQTCLLLRYLSQCSLDQLSIDERANVLFAILRVFSDSDEVAASPDAQKFVRRIYSSGSRYDLIDALAAIFFQLSNDIATMADAVRTLWSITEDEPLVMRLTVEILMCLCQRSEVVANLPEFKLGDQMYCKQVKMIILDLTSDAHEQVPELHQKDELSNLVNEVFNLKR" ORIGIN // REFERENCE 1 (bases 1 to 1071) AUTHORS Sulson,J.E. and Waterston,R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282 (5396), 2012-2018 (1998) PUBMED 9851916 REMARK...
AA_position 281
NM_062976.9 - Caenorhabditis elegans - NCBI - UCSC - WormBase
Caenorhabditis elegans L-Fucosyltransferase (C18G1.8), mRNA. (1111 bp)
Tr:C18G1.8" /db_xref="GeneID:182798" /db_xref="GOA:O61922" /db_xref="InterPro:IPR002516" /db_xref="UniProtKB/TrEMBL:O61922" /db_xref="WormBase:WBGene00015986" /translation="MLNFQPFILKSTYLAGYHRGNNIFEMASLLGISRVLNRTATFFVGNKDYLKMLNRVNETLPGLVDQFLIINGTVPPCARNTTFGTRCCVYEDPRVLANIDDQYLHITGIFLQSWKYFSNMKDELTGYLKKSGAKFGFLPKSDKNTHVNCVHVRKGDFQAVGFATADLKFVRSAIRFIEKKEKPKNLKQVAVLFGDNLEFLKSVINDYIFSNQTPHKKTNSTHFISQNMPADDLIYSKNHCDSVLISSPHSTFGWWIGYFSKGNKVYYMDIRETNDRVYRHGQLLPYDYFLPHWTPLKYASDNATVIESRK" misc_feature 190..963 /gene="C18G1.8" /locus_tag="CELE_C18G1.8" /note="Alpha-1,2-fucosyltransferase; Region: Fut1_...
AA_position 121
NM_071880.4 - Caenorhabditis elegans - NCBI - UCSC - WormBase
Caenorhabditis elegans Protein disulfide isomerase crld-1 (crld-1), mRNA. (1105 bp)
AVLIGATSQKEVTIKNEKCRTCNFLVSTFDEGLKKTARHHFAGGDTAWEEKNLGKYKTSETRLIEVLEGVCKKSSLPNMDNFMGIAEIEFKCSTQLEKHEETIEEFYYNQQHNNMSNWLCVEQLKLCCPDGHFGKNCEQCPGLSEKADVCFGKGSCHGDGSREGSGKCKCETGYTGNLCRYCDIEYFEESRTVQGVVCKKCHEGCLGVCSSESSKGCSKCKNGWKLTEEGCADVNECQNESACTKEHEICVNTVGSFKCECKEGYKKDDEQNCQFDVEALKATEQQAHEDEDGDDDDEKDEL" misc_feature 137..466 /gene="crld-1" /locus_tag="CELE_F09E8.2" /note="TLR4 regulator and MIR-interacting MSAP; Region: DUF3456; pfam11938" /db_xref="CDD:432202" misc_feature 782..907 /gene="crld-1" /locus_tag="CELE_F09E8.2" /note="Calcium-binding EGF-like domain; Region: EGF_CA; smart00179" /db_...
AA_position 307
NM_001392424.1 - Caenorhabditis elegans - NCBI - UCSC - WormBase
Caenorhabditis elegans 7TM GPCR serpentine receptor class x (Srx) domain-containing protein (srx-10), partial mRNA. (1036 bp)
translation="MFKTAAGYFFFQLCLIGFVINMGVLVPLRRVQKNGDKNCVYLIAIVTILNDNINLLVNLCYFAPSIISDSYILADSPEKLGPMLMTRISHFSWYNTIFVMIVMALNRMTLVVLNKPNIFTKQRVLTYFFISSILSFSKVVFDVFLIPCCLVLMDHKKYGWTYYNPKNIKNWGELIDTIMEVGIFTATLLCYVIIFIKIRISNNSVEQSIDSKHFQKLRARERSVAVQFALVSIFSIISFASFKVVPMIFGKLNTESNIISPICFAVHCCANGCIYMFMNEEVKDELLKKIFKHNVVHTESNNPNGVPAEDPQLFF" misc_feature 31..744 /gene="srx-10" /locus_tag="CELE_R10D12.4" /note="seven-transmembrane G protein-coupled receptor superfamily; Region: 7tm_GPCRs; cl28897" /db_xref="CDD:452889" misc_feature 367..444 /gene="srx-10" /locus_tag="CELE_R10D12.4" /note="TM helix 4...
AA_position 283
NM_074058.4 - Caenorhabditis elegans - NCBI - UCSC - WormBase
Caenorhabditis elegans Alpha-2-macroglobulin RAP C-terminal domain-containing protein (C15C8.4), partial mRNA. (1295 bp)
db_xref="WormBase:WBGene00007606" /translation="MRNHFSFLLFLLVIGSAHNKKTQYRTERINFIYEKALQHVTDRQNLARLEKELSGYDAIYLASKSNRQGTQGTKEIDKIDDKLGKILEKYGLEKAVLAFKEKYKHKNLFQQTDDNEPLPSGKFTDQNLQKLWSQAQNGKFSQKELNALHGELKEVEQKMRVYEDQLDDFKKVPHENSIQHDIESIGDKTKKLKAANRELNDHLDEVHRKVTSEEFSPFNEPRVKRLWKLAQENEKLTPHELSVLKDELSHFESQLKKIEFHKEEVSRLQEDAEERGKDKSQVYENLELSIKHEKLNRKARKLEKYIEEKIIIHREL" misc_feature 367..930 /gene="C15C8.4" /locus_tag="CELE_C15C8.4" /note="Alpha-2-macroglobulin RAP, C-terminal domain; Region: Alpha-2-MRAP_C; pfam06401" /db_xref="CDD:428921" misc_feature 652..948 /gene="C15C8.4" /locus_tag="CELE_...
AA_position 245
NM_073786.8 - Caenorhabditis elegans - NCBI - UCSC - WormBase
Caenorhabditis elegans Diglyceride acyltransferase (mboa-2), partial mRNA. (951 bp)
Tr:H19N07.4b.3" /db_xref="GeneID:179540" /db_xref="GOA:F1LIN4" /db_xref="InterPro:IPR004299" /db_xref="InterPro:IPR014371" /db_xref="InterPro:IPR027251" /db_xref="UniProtKB/TrEMBL:F1LIN4" /db_xref="WormBase:WBGene00010408" /translation="MMGVYVIEALKFISYGHVNYWARDARRKITELKTQVTDLAKKTCDPKQFWDLKDELSMHQMAAQYPANLTLSNIYYFMAAPTLCYEFKFPRLLRIRKHFLIKRTVELIFLSFLIAALVQQWVVPTVRNSMKPLSEMEYSRCLERLLKLAIPNHLIWLLFFYTFFHSFLNLIAELLRFADREFYRDFWNAETIGYFWKSWNIPVHRFAVRHIYSPMMRNNFSKMSAFFVVFFVSAFFHEYLVSVPLKIFRLWSYYGMMGQIPLSIITDKVVRGGRTGNIIVWLSLIVGQPLAILMYGHDWYILNFGVSAVQNQTVGI" misc_feature <1..885 /gene="mboa-2" /locus_...
AA_position 53
NM_001269373.3 - Caenorhabditis elegans - NCBI - UCSC - WormBase
Caenorhabditis elegans Phenazine biosynthesis-like domain-containing protein (R02D1.2), mRNA. (1949 bp)
Tr:R02D1.2" /db_xref="GeneID:24104785" /db_xref="GOA:U4PSC5" /db_xref="InterPro:IPR003719" /db_xref="UniProtKB/TrEMBL:U4PSC5" /db_xref="WormBase:WBGene00235310" /translation="MPKNYPSFIVDAFTKTSFGGNPAAVCLIPKALSDREYLKISSEFNLSETAFPIPIGASSDYKQCSQFSLRWFTPTNEVPLCGHATLATSHVLFNEIGNVNAEIKFETKSGTLTVRKDELGDVEMNFPEYELTSIKFKNIENSLHGVFSELEAPDFLQNVISCVVPIEINIESVVFAPKANVLNVVIDPKTTKFEFEAFKSNNSKMLELHDGSIVRGLVVSMSPSNPVAQGFIDSSGKPYDYACRYFAVWDGVNEDPATGSAQCSLGPFWSKILGKKDMYALQAFPTRGAQFRVRLQDGRVILNGSSVTVLRGEIIIH" misc_feature 734..1672 /gene="R02D1.2" /locus_tag="CELE_R02D1.2" /note="Predicted epimerase YddE/YHI9,...
AA_position 116
NM_001392500.1 - Caenorhabditis elegans - NCBI - UCSC - WormBase
Caenorhabditis elegans peptidylprolyl isomerase (fkb-7), mRNA. (1495 bp)
GGLNNGASSKNVGGRRQPTGGGGLDENIPVIEIRGEGAPMSSAQIRHLEEMDNGGPLDIKIEKTFVPAKCPQQAKRLDFVTFHYKVFTEDNKKVYQTYGTGPVTIQLGTGMIMPGLDKGLKGMCAEELRKVRVPYRMSRKSKSKVWKNIPNDENWLIFNIEMVEIKPYTPEIQFKFLDLNEDEQLTNKEVQDFQKKMKKEFGKTWKNEDIDNVTAAGYYIKYFDVNGDGIVTEVEWLKIMDRDEKLINDKKTKEKGRKRDPGIGWILDFDNDGIVSYKENDEAADRFDAGPTLLPMESKDEL" misc_feature 407..688 /gene="fkb-7" /locus_tag="CELE_B0511.1" /note="FKBP-type peptidyl-prolyl cis-trans isomerase; Region: FKBP_C; pfam00254" /db_xref="CDD:425560" misc_feature <716..913 /gene="fkb-7" /locus_tag="CELE_B0511.1" /note="EF-hand, extracellular calcium-binding (EC) motif, found in...
AA_position 315
NM_060391.4 - Caenorhabditis elegans - NCBI - UCSC - WormBase
Caenorhabditis elegans F-box domain-containing protein (fbxa-115), mRNA. (1043 bp)
IPR001810" /db_xref="InterPro:IPR002900" /db_xref="InterPro:IPR036047" /db_xref="InterPro:IPR040161" /db_xref="UniProtKB/TrEMBL:Q9U2W8" /db_xref="WormBase:WBGene00013755" /translation="MAEKLEDALKAIEISGPPSLSDMPMDVMHVIVDHLDAMDRLILRYVNRKMRNFVDNKKPNFKNIEVKAEDESYKLVLDQKSTIVYNSNGSGCIAKYDERWVLKINKDELAVMFDDVAVWMKYPKLRLDEFKLSAGWDYMMTINLLKEIKDVEDMFQAKKVILDVFEFCRDAFSILSHFEPGILEEIGIFCSDVYGSIHKLFTLEQWKQAKSVTLKCIEGIDIPIEHLFHLSRFDITLSEVSVSDARKIRDVLMKSAQFECGEICLLFDSDLRIEADVVRVFNPNFVDEYVSRPLQFKVEQFLVIIHKTSLRIKKIENPH" misc_feature 92..229 /gene="fbxa-115" /locus_tag="CELE_Y113G7B.3" /note="F-box domain found in...
AA_position 106
NM_075492.5 - Caenorhabditis elegans - NCBI - UCSC - WormBase
Caenorhabditis elegans D-3-phosphoglycerate dehydrogenase (phdh-1), mRNA. (1195 bp)
db_xref="GOA:O17626" /db_xref="InterPro:IPR006139" /db_xref="InterPro:IPR006140" /db_xref="InterPro:IPR029752" /db_xref="InterPro:IPR029753" /db_xref="InterPro:IPR036291" /db_xref="UniProtKB/TrEMBL:O17626" /db_xref="WormBase:WBGene00007836" /translation="MSAPINKVLIADDIEQECVDILKQNGIEVTVKTKQTKDELLVTLPQHDAVIVRSATKITAELLAASAGKLKLVGRAGTGVDNIDVPAASANKILVMNTPQANSRSAAELTCTLILSLSRHVPQAAASMKAGKWARKDFMGEEVYGRTLAVLGLGRIGSEVAVRLQAFGMKVIGFDPMVTKEQAEAKNIELLSLEQIWPQADYITVHVPLIKQTENLINKETLAKCKKGVRIINVARGGIVNEVDLVESLNAGHAKGAAFDVFEQEPPTFRELIDHPLVIATPHLGASTIDAQLRVASEIADNIVQYNKGTMLGVLNAREVLN" misc_feature...
AA_position 37
NM_064467.6 - Caenorhabditis elegans - NCBI - UCSC - WormBase

Data Export:

Maximum 10000 results can be retrieved as Tab-delimited text or JSON format.

Debug Info:

Redirect URI : http://ggrna.dbcls.jp/ce/aa%3aKDEL
lang : en | div : | spe : ce | query_string : aa:KDEL | format : html | download : 

0.000 | 0.000 | search_start;
0.079 | 0.079 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=(aa:KDEL)?source=Caenorhabditis elegans?to=0&format=json
0.137 | 0.058 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=(aa:KDEL)?source=Caenorhabditis elegans?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.142 | 0.005 | cgi_end;

GGRNA ver.2 by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]