LOCUS       NM_076700               1331 bp    mRNA    linear   INV 04-DEC-2024
DEFINITION  Caenorhabditis elegans Homeobox protein ceh-60 (ceh-60), mRNA.
ACCESSION   NM_076700
VERSION     NM_076700.6
DBLINK      BioProject: PRJNA158
KEYWORDS    RefSeq.
SOURCE      Caenorhabditis elegans
  ORGANISM  Caenorhabditis elegans
            Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
            Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
            Caenorhabditis.
REFERENCE   1  (bases 1 to 1331)
  AUTHORS   Sulson,J.E. and Waterston,R.
  CONSRTM   Caenorhabditis elegans Sequencing Consortium
  TITLE     Genome sequence of the nematode C. elegans: a platform for
            investigating biology
  JOURNAL   Science 282 (5396), 2012-2018 (1998)
   PUBMED   9851916
  REMARK    Erratum:[Science 1999 Jan 1;283(5398):35]
REFERENCE   2  (bases 1 to 1331)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-DEC-2024) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1331)
  AUTHORS   WormBase.
  CONSRTM   WormBase Consortium
  TITLE     Direct Submission
  JOURNAL   Submitted (17-OCT-2024) WormBase Group, European Bioinformatics
            Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org
REFERENCE   4  (bases 1 to 1331)
  AUTHORS   Sulson,J.E. and Waterston,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-MAR-2003) Nematode Sequencing Project: Sanger
            Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute
            at Washington University, St. Louis, MO 63110, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by WormBase. This
            record is derived from an annotated genomic sequence (NC_003284).
            
            On Feb 2, 2021 this sequence version replaced NM_076700.5.
FEATURES             Location/Qualifiers
     source          1..1331
                     /organism="Caenorhabditis elegans"
                     /mol_type="mRNA"
                     /strain="Bristol N2"
                     /db_xref="taxon:6239"
                     /chromosome="X"
     gene            1..1331
                     /gene="ceh-60"
                     /locus_tag="CELE_F22A3.5"
                     /db_xref="GeneID:184803"
                     /db_xref="WormBase:WBGene00017690"
     CDS             62..1144
                     /gene="ceh-60"
                     /locus_tag="CELE_F22A3.5"
                     /standard_name="F22A3.5"
                     /note="Confirmed by transcript evidence"
                     /codon_start=1
                     /product="Homeobox protein ceh-60"
                     /protein_id="NP_509101.4"
                     /db_xref="GeneID:184803"
                     /db_xref="WormBase:WBGene00017690"
                     /translation="

MDNLIKQLQMSVSSENVDRNFIEKCIEMNPCRRMLHEVLLERKDILRSRMNLVALYDTDEQSSEIEEILAQFENPTFPLEEVNTEKDEEWQPLERKYLDGINRIKEDTIMKQIQLDKDMEKALTNSEEVLRNHRDFRPIDEKDFSNIRQSISKRFEHSKNNIRGEAATKILVLRREIEQQGRKRRNFDKNTTDILQNWFHDHRQNPYPSDQEKAELAKQCNIKISQVNNWFGNQRIRTKQQALRMQEDERERAASMANEAQAIQNSLNSSTVASSSNMSTSGLINIPLVNPTMQSMVIPAVQPGLLGNPNAFLHQPHYFTAGGQMSLNDNGNGQQFFTDYETFGLAQSDTESFNQMGYLG"

     misc_feature    473..901
                     /gene="ceh-60"
                     /locus_tag="CELE_F22A3.5"
                     /note="Homeodomain-containing transcription factor
                     [Transcription]; Region: COG5576"
                     /db_xref="CDD:227863"
     misc_feature    order(605..616,620..622,680..682,698..700,737..739,
                     743..748,755..760,764..772,776..781)
                     /gene="ceh-60"
                     /locus_tag="CELE_F22A3.5"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(608..610,617..619,746..748,755..760,767..769)
                     /gene="ceh-60"
                     /locus_tag="CELE_F22A3.5"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    656..772
                     /gene="ceh-60"
                     /locus_tag="CELE_F22A3.5"
                     /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920"
                     /db_xref="CDD:428673"
ORIGIN      

acacatcacagctctgtgttgttgcgttcacaaccgagtgcatcacaccgatctttgagagatggataatcttattaagcagctccaaatgagcgtctcaagtgaaaacgtcgacaggaattttattgaaaaatgcatcgaaatgaatccctgtcgccggatgcttcacgaagtgctacttgaaagaaaagacattttacgctctcggatgaacttggttgcgttgtatgatacagatgaacaatcctccgaaattgaggaaattctcgctcaattcgaaaatcctacatttccgttggaagaggtcaacactgagaaagacgaggaatggcaacccttagaaaggaaatatttggacggaattaaccgtataaaagaagacactatcatgaaacaaattcaactggacaaggatatggaaaaagccctgactaatagcgaagaagtactcagaaatcatcgcgattttagaccgatcgacgaaaaggatttctctaacattcggcaaagcatttccaaaaggttcgagcattcgaaaaataacattcgcggggaggcagcaactaaaattctagttctccggagggagatcgagcagcagggacgcaagcgccggaactttgacaaaaacacgacggacattttgcaaaactggttccacgatcatcgtcaaaatccttacccgtccgaccaggaaaaggcggaattagcaaaacagtgtaatatcaaaatttcacaggttaacaattggtttggaaatcaacgaattcggacaaaacaacaagctttgcgtatgcaagaagatgaacgtgaaagagctgcatcaatggctaacgaagcacaagcaattcagaattctttgaacagttctacggttgcatcttcgtcgaatatgagcacatcggggctcattaacattccgctggttaacccaacaatgcaatcaatggtaattcctgcagtgcaaccaggcctacttggcaatccaaacgcgtttctccatcagccacactattttactgccggaggacaaatgtcactcaatgataatggaaatggacagcaattcttcacagattatgagacctttggacttgcacaatcggatacagagtcgttcaatcaaatgggatatctaggatgatctactttgattgagaaattaaatgttgaattcgaaattcgttgtgtttcataattcatcttttcaaagctttccttcattttcatgtttatctttagttttgctaaaagccaagttttatattttgaaaaaatatttatctggttcattaatatataatacaatctgaataaataattgcacaatg

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